Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002629

Physical Location & Seq

Genomic Coordinates Forward (+)

600148 .. 600999

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1008500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGAAGTCAAGCTTTGGCTCCAGATACGGATCTACATCCTTGCAGCCACCTGCAAGAGACCAAGAAAAATCTTTAGCTGAATCTGAAGCCAAGAGAGAAGGAGAAACATCTGCTACCATCTCAGAGCTGTTTCATGGTTTTCTCACCATTGGAACTCTTGGTTCAGAATCAAGTATCAATGAGCCTGAAACACCAACTTTTGCGACGACTTTAGAGAACTTAACTCAGCAAAAAGCAGAGGTAACAGAGAACGACTTGAAGCTCATCAGCTATGAGCTTGAGAAGTTTCTTGAGGCTGAGACAAAGGAAGAAGGGGTCCATGCATCATCAGCAAGGGACAGTAATGCTAGCTCTATTACACTCAGTGGCATGCAAATGGAGGAATCCGAAGATGAAGAATACTGGACTGCAGCATATCCGCTCAAAGGATATCTCTTTGGGTCCTCAACTGAATTACCAGAAACAACAATGGAGGCAAAGAAAGAAAGGGCATCACTGCAAGAGCTGTTTGACAGGACCAAAATCACAACTGATTATAAGGAGAAAAGTGAGATTGAGGAGATAGAAGTCAAACATAAGCATAAATCTGCAATGGGGTTCATGAAGAATATGATTAAAAAATTCCATGCTTCTTCAAGGAGATCTTCCCCTTCTACAGGTGGTGATGCAACTGATCCTGTTTCCATCAAGAAGAAACTTGGTGAGGCATCTGATTCGCTTCCAACCAAGAAGAAACCCCATAAGGTTGGGTTCCTACAGCTAGATCTTCTGAGAACAGTGCATCTGATGGCTCTTCATCACACACACACACACACAAATACACACACAGAACAGTTAAACAATATATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009959 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

284

Amino Acids

31.65

Weight (kDa)

5.69

Isoelectric Point (pI)

50.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14090 AT5G14090
fragaria_vesca	FvH4_4g23460 FvH4_6g53810
malus_domestica	MD09G1008500.v1.1 MD13G1122400.v1.1 MD16G1122900.v1.1 MD17G1002300.v1.1
prunus_persica	Prupe.1G222800_v2.0.a1 Prupe.1G222800_v2.0.a1 Prupe.3G308500_v2.0.a1 Prupe.3G308500_v2.0.a1
pyrus_communis	pycom111g00680 pycom16g10510
rosa_chinensis	RchiOBHm_Chr4g0429831
rosa_laevigata	RLG00000007040 RLG00000022367
rosa_multiflora	Rmu_co8344809.1_g000001 Rmu_sc0006762.1_g000005 Rmu_sc0012106.1_g000002 Rmu_sc0018638.1_g000001 Rmu_sc0018801.1_g000006 Rmu_sc0037594.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076940 Rroxscaffold_5G00371590
rosa_rugosa	Rorug02G0588700 Rorug02G0588800 Rorug04G0238500 Rorug04G0238500 Rorug04G0238500
rosa_samantha	Rh2AG668000 Rh2BG679500 Rh2CG642300 Rh2DG693000 Rh4AG294700 Rh4BG301100 Rh4CG316300 Rh4DG298000
rosa_wichuraiana	Rw2G054760 Rw4G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
AarI	CACCTGC	1 cut(s)	58
Acc36I	ACCTGC	1 cut(s)	58
AccBSI	CCGCTC	1 cut(s)	421
AciI	CCGC	1 cut(s)	419
AclWI	GGATC	2 cut(s)	37, 668
AcsI	RAATTY	1 cut(s)	620
AcuI	CTGAAG	1 cut(s)	105
AdeI	CACNNNGTG	1 cut(s)	365
AfiI	CCNNNNNNNGG	2 cut(s)	425, 656
AgsI	TTSAA	2 cut(s)	259, 636
AluBI	AGCT	9 cut(s)	12, 77, 127, 262, 270, 277, 351, 505, 760
AluI	AGCT	9 cut(s)	12, 77, 127, 262, 270, 277, 351, 505, 760
Alw26I	GTCTC	2 cut(s)	51, 293
AlwI	GGATC	2 cut(s)	37, 668
ApeKI	GCWGC	2 cut(s)	43, 410
ApoI	RAATTY	1 cut(s)	620
AspS9I	GGNCC	3 cut(s)	316, 441, 516
AsuHPI	GGTGA	3 cut(s)	136, 674, 713
AsuNHI	GCTAGC	1 cut(s)	347
AvaII	GGWCC	3 cut(s)	316, 441, 516
BbvI	GCAGC	2 cut(s)	55, 422
BccI	CCATC	3 cut(s)	125, 692, 781
BcgI	CGANNNNNNTGC	2 cut(s)	696, 730
BcoDI	GTCTC	2 cut(s)	51, 293
BfaI	CTAG	2 cut(s)	348, 761
BfmI	CTRYAG	3 cut(s)	408, 654, 755
BfuAI	ACCTGC	1 cut(s)	58
BglII	AGATCT	2 cut(s)	641, 763
BisI	GCNGC	2 cut(s)	44, 411
BlsI	GCNGC	2 cut(s)	45, 412
Bme18I	GGWCC	3 cut(s)	316, 441, 516
BmgT120I	GGNCC	3 cut(s)	316, 441, 516
BmiI	GGNNCC	4 cut(s)	19, 317, 442, 752
BmsI	GCATC	5 cut(s)	332, 500, 655, 716, 790
BmtI	GCTAGC	1 cut(s)	351
BpmI	CTGGAG	1 cut(s)	4
BpuEI	CTTGAG	2 cut(s)	299, 311
BsaBI	GATNNNNATC	2 cut(s)	28, 34
BsaI	GGTCTC	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	2 cut(s)	425, 656
Bse1I	ACTGG	1 cut(s)	407
Bse3DI	GCAATG	1 cut(s)	597
Bse8I	GATNNNNATC	2 cut(s)	28, 34
BseGI	GGATG	1 cut(s)	35
BseJI	GATNNNNATC	2 cut(s)	28, 34
BseLI	CCNNNNNNNGG	2 cut(s)	425, 656
BseMI	GCAATG	1 cut(s)	597
BseMII	CTCAG	5 cut(s)	135, 239, 288, 376, 761
BseNI	ACTGG	1 cut(s)	407
BseRI	GAGGAG	1 cut(s)	572
BseXI	GCAGC	2 cut(s)	55, 422
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	2 cut(s)	425, 656
BsmAI	GTCTC	2 cut(s)	51, 293
BsmFI	GGGAC	1 cut(s)	350
Bso31I	GGTCTC	1 cut(s)	51
Bsp143I	GATC	4 cut(s)	29, 641, 673, 763
BspACI	CCGC	1 cut(s)	419
BspCNI	CTCAG	5 cut(s)	134, 238, 289, 375, 762
BspHI	TCATGA	1 cut(s)	600
BspLI	GGNNCC	4 cut(s)	19, 317, 442, 752
BspMAI	CTGCAG	1 cut(s)	412
BspMI	ACCTGC	1 cut(s)	58
BspOI	GCTAGC	1 cut(s)	351
BspPI	GGATC	2 cut(s)	37, 668
BspQI	GCTCTTC	1 cut(s)	798
BspTNI	GGTCTC	1 cut(s)	51
BsrBI	CCGCTC	1 cut(s)	421
BsrDI	GCAATG	1 cut(s)	597
BsrI	ACTGG	1 cut(s)	407
BssMI	GATC	4 cut(s)	29, 641, 673, 763
Bst4CI	ACNGT	3 cut(s)	341, 778, 834
Bst6I	CTCTTC	1 cut(s)	798
BstC8I	GCNNGC	2 cut(s)	349, 371
BstDEI	CTNAG	5 cut(s)	121, 225, 297, 362, 770
BstENI	CCTNNNNNAGG	1 cut(s)	654
BstF5I	GGATG	1 cut(s)	35
BstKTI	GATC	4 cut(s)	32, 644, 676, 766
BstMAI	GTCTC	2 cut(s)	51, 293
BstMBI	GATC	4 cut(s)	29, 641, 673, 763
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstNSI	RCATGY	1 cut(s)	373
BstSFI	CTRYAG	3 cut(s)	408, 654, 755
BstV1I	GCAGC	2 cut(s)	55, 422
BstX2I	RGATCY	3 cut(s)	29, 641, 763
BstXI	CCANNNNNNTGG	1 cut(s)	746
BstYI	RGATCY	3 cut(s)	29, 641, 763
BtsCI	GGATG	1 cut(s)	35
BtsI	GCAGTG	1 cut(s)	494
BtsIMutI	CAGTG	3 cut(s)	370, 494, 783
BveI	ACCTGC	1 cut(s)	58
Cac8I	GCNNGC	2 cut(s)	349, 371
CciI	TCATGA	1 cut(s)	600
Cfr13I	GGNCC	3 cut(s)	316, 441, 516
CviAII	CATG	5 cut(s)	134, 320, 370, 601, 626
DdeI	CTNAG	5 cut(s)	121, 225, 297, 362, 770
DpnI	GATC	4 cut(s)	31, 643, 675, 765
DpnII	GATC	4 cut(s)	29, 641, 673, 763
DraIII	CACNNNGTG	1 cut(s)	365
Eam1104I	CTCTTC	1 cut(s)	798
EarI	CTCTTC	1 cut(s)	798
Eco31I	GGTCTC	1 cut(s)	51
Eco32I	GATATC	1 cut(s)	431
Eco47I	GGWCC	3 cut(s)	316, 441, 516
Eco57I	CTGAAG	1 cut(s)	105
EcoNI	CCTNNNNNAGG	1 cut(s)	654
EcoO109I	RGGNCCY	1 cut(s)	441
EcoRV	GATATC	1 cut(s)	431
EcoT22I	ATGCAT	1 cut(s)	325
FaeI	CATG	5 cut(s)	137, 323, 373, 604, 629
FalI	AAGNNNNNCTT	3 cut(s)	28, 628, 660
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	5 cut(s)	133, 319, 369, 600, 625
Fnu4HI	GCNGC	2 cut(s)	44, 411
FokI	GGATG	1 cut(s)	22
Fsp4HI	GCNGC	2 cut(s)	44, 411
FspBI	CTAG	2 cut(s)	348, 761
GluI	GCNGC	2 cut(s)	44, 411
GsuI	CTGGAG	1 cut(s)	4
Hin1II	CATG	5 cut(s)	137, 323, 373, 604, 629
HindIII	AAGCTT	1 cut(s)	10
HinfI	GANTC	4 cut(s)	80, 167, 383, 713
HphI	GGTGA	3 cut(s)	136, 674, 713
Hpy188I	TCNGA	7 cut(s)	85, 124, 166, 388, 712, 771, 786
Hpy188III	TCNNGA	4 cut(s)	21, 290, 601, 688
Hpy99I	CGWCG	1 cut(s)	208
HpyAV	CCTTC	3 cut(s)	92, 305, 660
HpyCH4III	ACNGT	3 cut(s)	341, 778, 834
HpyCH4V	TGCA	9 cut(s)	43, 53, 323, 373, 410, 499, 590, 668, 781
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	5 cut(s)	121, 225, 297, 362, 770
Hsp92II	CATG	5 cut(s)	137, 323, 373, 604, 629
Kzo9I	GATC	4 cut(s)	29, 641, 673, 763
LguI	GCTCTTC	1 cut(s)	798
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	8 cut(s)	34, 63, 198, 388, 471, 499, 642, 690
Lsp1109I	GCAGC	2 cut(s)	55, 422
LweI	GCATC	5 cut(s)	332, 500, 655, 716, 790
MaeI	CTAG	2 cut(s)	348, 761
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	4 cut(s)	31, 643, 675, 765
MbiI	CCGCTC	1 cut(s)	421
MboI	GATC	4 cut(s)	29, 641, 673, 763
MflI	RGATCY	3 cut(s)	29, 641, 763
MluCI	AATT	2 cut(s)	452, 620
MmeI	TCCRAC	1 cut(s)	746
MnlI	CCTC	7 cut(s)	232, 286, 373, 454, 466, 550, 697
Mph1103I	ATGCAT	1 cut(s)	325
MseI	TTAA	3 cut(s)	221, 615, 836
MslI	CAYNNNNRTG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	329
NdeII	GATC	4 cut(s)	29, 641, 673, 763
NheI	GCTAGC	1 cut(s)	347
NlaIII	CATG	5 cut(s)	137, 323, 373, 604, 629
NlaIV	GGNNCC	4 cut(s)	19, 317, 442, 752
NsiI	ATGCAT	1 cut(s)	325
NspI	RCATGY	1 cut(s)	373
PaeI	GCATGC	1 cut(s)	373
PagI	TCATGA	1 cut(s)	600
PaqCI	CACCTGC	1 cut(s)	58
PciSI	GCTCTTC	1 cut(s)	798
PfeI	GAWTC	4 cut(s)	80, 167, 383, 713
PkrI	GCNGC	2 cut(s)	45, 412
PpuMI	RGGWCCY	1 cut(s)	441
PsiI	TTATAA	1 cut(s)	537
Psp5II	RGGWCCY	1 cut(s)	441
PspN4I	GGNNCC	4 cut(s)	19, 317, 442, 752
PspPI	GGNCC	3 cut(s)	316, 441, 516
PspPPI	RGGWCCY	1 cut(s)	441
PstI	CTGCAG	1 cut(s)	412
PsuI	RGATCY	3 cut(s)	29, 641, 763
RseI	CAYNNNNRTG	1 cut(s)	374
SapI	GCTCTTC	1 cut(s)	798
SaqAI	TTAA	3 cut(s)	221, 615, 836
SatI	GCNGC	2 cut(s)	44, 411
Sau3AI	GATC	4 cut(s)	29, 641, 673, 763
Sau96I	GGNCC	3 cut(s)	316, 441, 516
SfaNI	GCATC	5 cut(s)	332, 500, 655, 716, 790
SfcI	CTRYAG	3 cut(s)	408, 654, 755
SinI	GGWCC	3 cut(s)	316, 441, 516
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	2 cut(s)	278, 290
SmoI	CTYRAG	2 cut(s)	278, 290
SphI	GCATGC	1 cut(s)	373
Sse9I	AATT	2 cut(s)	452, 620
SsiI	CCGC	1 cut(s)	419
SspMI	CTAG	2 cut(s)	348, 761
TaaI	ACNGT	3 cut(s)	341, 778, 834
TasI	AATT	2 cut(s)	452, 620
TfiI	GAWTC	4 cut(s)	80, 167, 383, 713
Tru1I	TTAA	3 cut(s)	221, 615, 836
Tru9I	TTAA	3 cut(s)	221, 615, 836
TscAI	CASTG	3 cut(s)	370, 501, 783
TseI	GCWGC	2 cut(s)	43, 410
TspDTI	ATGAA	6 cut(s)	17, 122, 408, 589, 617, 785
TspGWI	ACGGA	1 cut(s)	42
TspRI	CASTG	3 cut(s)	370, 501, 783
VpaK11BI	GGWCC	3 cut(s)	316, 441, 516
XagI	CCTNNNNNAGG	1 cut(s)	654
XapI	RAATTY	1 cut(s)	620
XceI	RCATGY	1 cut(s)	373
XspI	CTAG	2 cut(s)	348, 761
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.