Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002629

Physical Location & Seq

Genomic Coordinates Forward (+)

25922802 .. 25925405

Gene Structure 2604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGAAGTTACTAGGATGGATGCATCGAAAGTTTCGTCAGAATAGCAATGAACCTGTTTTCCTCATTGAGCGTTCTTGTGCATGTCTTGCAGGGCAGCCATCACTCGATGATCAGCAATACTATGGAAAGGCAAACTACGGCAATAAACCCTTTAAACAAGGCCAGAGAGACCATCAGCTTCGAAATTCTTTTGCTGGTCTAGAATCAGCCAAGGTAGATCAAGAAGATTACTTTGAAGATGAATCCTATGCTGCGGCATCTGAGCTCTTCCATGGTTTTCTTGCAATCGGTACATTTGGCTCAGACCAAGTCATCACCGAGCCATCAACACCAACACTGGGCATGTCTGTGGAGAATATCACTGAAAAAGAGACGGAGGCCACAGAGAATGAACTGAAACTCATAAATGATGAGTTGGAAAAGGTGCTGGTAGCTGAAGCTAAGGATGAAATTTGCAATGATTCATCTGGAAGGAACAGCCATGTTAGCAATGGAAGAAGTAGTCATGGTAGCACCATTACATTAAGTGGTAAGATGCTAGAAGTCCCAGAAAGCAATGGGACTAATGGAACTACAGTCTGCCCACTTCAGGGATATCTTTTTGGGTCAGCATATGAGTTGCCAGAAACAACAACAGTAGCAAAGAAGGAGCAGAGGACATCTCTTGGTGAGCTGTTTCAGAAGAGTAAACTGACCGAAGAGAATTATTCTGGAGCAAAACTCAGCAAGGAGGAGAAGAGAGCAGACCAGAAAGAAGCTGATAAGTCTTCCATTCATTTGATGAAAAAGAAGCTCATGAAAAAAGTGCTTCACATGAATGCTTCTTCTCGAAGCTCTACAGCAGCTGGTGAACCTGGTTCAGCGGAAACAAAACTGAATAAGATCCTTCAGATGTTCCACAGAAAAGTTCACCCAGAAAACTCGACTGCTGGGGAAAAATCTGGCAAGTATCAAAAGAGCGAGAATAAAAAGAGAAGGAGCAGTGATGGGATCAGCAACCATAGAGATCAGGTCTTCCCAGATGATCAAGACATCATGTTATATCCTGAACAAGTCTCTTCATCAAACCAGATCATGCGACGCTACAAGAGCCAATCTAACCCTCCCCAGTTTGCACTTGGTGCCCTTGATTCAAATGGGAACAAGGAGCACTGGATCAAAACTGATGCAGACTACCTAGTCTTGGAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0010817 GO:0016020 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0051049 GO:0065007 GO:0065008 GO:0071944 GO:2000012

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

398

Amino Acids

44.35

Weight (kDa)

6.17

Isoelectric Point (pI)

49.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14090 AT5G14090
fragaria_vesca	FvH4_4g23460 FvH4_6g53810
malus_domestica	MD09G1008500.v1.1 MD13G1122400.v1.1 MD16G1122900.v1.1 MD17G1002300.v1.1
prunus_persica	Prupe.1G222800_v2.0.a1 Prupe.1G222800_v2.0.a1 Prupe.3G308500_v2.0.a1 Prupe.3G308500_v2.0.a1
pyrus_communis	pycom111g00680 pycom16g10510
rosa_chinensis	RchiOBHm_Chr4g0429831
rosa_laevigata	RLG00000007040 RLG00000022367
rosa_multiflora	Rmu_co8344809.1_g000001 Rmu_sc0006762.1_g000005 Rmu_sc0012106.1_g000002 Rmu_sc0018638.1_g000001 Rmu_sc0018801.1_g000006 Rmu_sc0037594.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076940 Rroxscaffold_5G00371590
rosa_rugosa	Rorug02G0588700 Rorug02G0588800 Rorug04G0238500 Rorug04G0238500 Rorug04G0238500
rosa_samantha	Rh2AG668000 Rh2BG679500 Rh2CG642300 Rh2DG693000 Rh4AG294700 Rh4BG301100 Rh4CG316300 Rh4DG298000
rosa_wichuraiana	Rw2G054760 Rw4G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1178
AccB1I	GGYRCC	1 cut(s)	1121
AciI	CCGC	2 cut(s)	254, 863
AclWI	GGATC	3 cut(s)	877, 998, 1163
AcsI	RAATTY	2 cut(s)	184, 450
AcuI	CTGAAG	3 cut(s)	456, 572, 872
AdeI	CACNNNGTG	1 cut(s)	1121
AfaI	GTAC	1 cut(s)	292
AfiI	CCNNNNNNNGG	4 cut(s)	338, 589, 590, 1183
AgsI	TTSAA	2 cut(s)	236, 1134
AjnI	CCWGG	1 cut(s)	853
AloI	GAACNNNNNNTCC	2 cut(s)	42, 74
Alw21I	GWGCWC	2 cut(s)	267, 1152
Alw26I	GTCTC	3 cut(s)	162, 365, 1060
AlwI	GGATC	3 cut(s)	877, 998, 1163
AlwNI	CAGNNNCTG	1 cut(s)	845
AoxI	GGCC	2 cut(s)	160, 378
ApeKI	GCWGC	3 cut(s)	94, 251, 842
ApoI	RAATTY	2 cut(s)	184, 450
ArsI	GACNNNNNNTTYG	2 cut(s)	19, 51
AsuHPI	GGTGA	4 cut(s)	307, 680, 860, 902
AsuII	TTCGAA	1 cut(s)	181
BaeGI	GKGCMC	1 cut(s)	1126
BanI	GGYRCC	1 cut(s)	1121
BanII	GRGCYC	1 cut(s)	267
BbsI	GAAGAC	2 cut(s)	759, 1006
Bbv12I	GWGCWC	2 cut(s)	267, 1152
BbvI	GCAGC	3 cut(s)	106, 238, 854
BccI	CCATC	5 cut(s)	9, 106, 180, 331, 980
BceAI	ACGGC	1 cut(s)	154
BciT130I	CCWGG	1 cut(s)	855
BclI	TGATCA	2 cut(s)	109, 1024
BcoDI	GTCTC	3 cut(s)	162, 365, 1060
BfaI	CTAG	4 cut(s)	11, 200, 539, 1178
BfmI	CTRYAG	2 cut(s)	573, 837
BisI	GCNGC	4 cut(s)	95, 252, 255, 843
BlsI	GCNGC	4 cut(s)	96, 253, 256, 844
Bme1390I	CCNGG	1 cut(s)	855
BmiI	GGNNCC	1 cut(s)	1123
BmrFI	CCNGG	1 cut(s)	855
BmrI	ACTGGG	2 cut(s)	347, 1102
BmsI	GCATC	5 cut(s)	9, 31, 266, 525, 1156
BmuI	ACTGGG	2 cut(s)	347, 1102
BpiI	GAAGAC	2 cut(s)	759, 1006
BplI	GAGNNNNNCTC	4 cut(s)	646, 678, 705, 737
BpmI	CTGGAG	1 cut(s)	732
Bpu10I	CCTNAGC	1 cut(s)	441
Bpu14I	TTCGAA	1 cut(s)	181
BsaI	GGTCTC	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	210, 271
Bsc4I	CCNNNNNNNGG	4 cut(s)	338, 589, 590, 1183
Bse1I	ACTGG	3 cut(s)	342, 1108, 1157
Bse3DI	GCAATG	4 cut(s)	52, 463, 496, 562
BseBI	CCWGG	1 cut(s)	855
BseDI	CCNNGG	2 cut(s)	210, 271
BseGI	GGATG	3 cut(s)	20, 24, 451
BseLI	CCNNNNNNNGG	4 cut(s)	338, 589, 590, 1183
BseMI	GCAATG	4 cut(s)	52, 463, 496, 562
BseMII	CTCAG	3 cut(s)	252, 315, 736
BseNI	ACTGG	3 cut(s)	342, 1108, 1157
BseRI	GAGGAG	1 cut(s)	746
BseSI	GKGCMC	1 cut(s)	1126
BseXI	GCAGC	3 cut(s)	106, 238, 854
BseYI	CCCAGC	1 cut(s)	929
BshFI	GGCC	2 cut(s)	162, 380
BshNI	GGYRCC	1 cut(s)	1121
BsiHKAI	GWGCWC	2 cut(s)	267, 1152
BslFI	GGGAC	2 cut(s)	530, 574
BslI	CCNNNNNNNGG	4 cut(s)	338, 589, 590, 1183
BsmAI	GTCTC	3 cut(s)	162, 365, 1060
BsmBI	CGTCTC	1 cut(s)	365
BsmFI	GGGAC	2 cut(s)	530, 574
BsmI	GAATGC	1 cut(s)	823
BsnI	GGCC	2 cut(s)	162, 380
Bso31I	GGTCTC	1 cut(s)	162
Bsp119I	TTCGAA	1 cut(s)	181
Bsp1286I	GDGCHC	3 cut(s)	267, 1126, 1152
Bsp143I	GATC	8 cut(s)	109, 217, 882, 990, 1006, 1024, 1071, 1155
Bsp19I	CCATGG	1 cut(s)	271
BspACI	CCGC	2 cut(s)	254, 863
BspANI	GGCC	2 cut(s)	162, 380
BspCNI	CTCAG	3 cut(s)	253, 314, 735
BspHI	TCATGA	1 cut(s)	795
BspLI	GGNNCC	1 cut(s)	1123
BspPI	GGATC	3 cut(s)	877, 998, 1163
BspQI	GCTCTTC	1 cut(s)	272
BspT104I	TTCGAA	1 cut(s)	181
BspT107I	GGYRCC	1 cut(s)	1121
BspTNI	GGTCTC	1 cut(s)	162
BsrDI	GCAATG	4 cut(s)	52, 463, 496, 562
BsrI	ACTGG	3 cut(s)	342, 1108, 1157
BssECI	CCNNGG	2 cut(s)	210, 271
BssMI	GATC	8 cut(s)	109, 217, 882, 990, 1006, 1024, 1071, 1155
BssT1I	CCWWGG	2 cut(s)	210, 271
Bst2UI	CCWGG	1 cut(s)	855
Bst4CI	ACNGT	2 cut(s)	577, 637
Bst6I	CTCTTC	5 cut(s)	272, 677, 693, 731, 1063
BstAPI	GCANNNNNTGC	2 cut(s)	86, 1121
BstBI	TTCGAA	1 cut(s)	181
BstDEI	CTNAG	4 cut(s)	261, 301, 441, 722
BstDSI	CCRYGG	1 cut(s)	271
BstF5I	GGATG	3 cut(s)	20, 24, 451
BstKTI	GATC	8 cut(s)	112, 220, 885, 993, 1009, 1027, 1074, 1158
BstMAI	GTCTC	3 cut(s)	162, 365, 1060
BstMBI	GATC	8 cut(s)	109, 217, 882, 990, 1006, 1024, 1071, 1155
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 486, 1089, 1121
BstNI	CCWGG	1 cut(s)	855
BstNSI	RCATGY	2 cut(s)	84, 346
BstSCI	CCNGG	1 cut(s)	853
BstSFI	CTRYAG	2 cut(s)	573, 837
BstSLI	GKGCMC	1 cut(s)	1126
BstV1I	GCAGC	3 cut(s)	106, 238, 854
BstV2I	GAAGAC	2 cut(s)	759, 1006
BstX2I	RGATCY	1 cut(s)	882
BstYI	RGATCY	1 cut(s)	882
BsuRI	GGCC	2 cut(s)	162, 380
BtgI	CCRYGG	1 cut(s)	271
BtsCI	GGATG	3 cut(s)	20, 24, 451
BtsI	GCAGTG	1 cut(s)	988
BtsIMutI	CAGTG	4 cut(s)	335, 360, 988, 1150
CaiI	CAGNNNCTG	1 cut(s)	845
CciI	TCATGA	1 cut(s)	795
CseI	GACGC	1 cut(s)	1089
CsiI	ACCWGGT	1 cut(s)	853
Csp6I	GTAC	1 cut(s)	291
CviAII	CATG	9 cut(s)	81, 272, 343, 482, 506, 796, 814, 1036, 1075
CviQI	GTAC	1 cut(s)	291
DdeI	CTNAG	4 cut(s)	261, 301, 441, 722
DpnI	GATC	8 cut(s)	111, 219, 884, 992, 1008, 1026, 1073, 1157
DpnII	GATC	8 cut(s)	109, 217, 882, 990, 1006, 1024, 1071, 1155
DraI	TTTAAA	1 cut(s)	154
DraIII	CACNNNGTG	1 cut(s)	1121
DrdI	GACNNNNNNGTC	1 cut(s)	1178
DseDI	GACNNNNNNGTC	1 cut(s)	1178
Eam1104I	CTCTTC	5 cut(s)	272, 677, 693, 731, 1063
EarI	CTCTTC	5 cut(s)	272, 677, 693, 731, 1063
Ecl136II	GAGCTC	1 cut(s)	265
Eco130I	CCWWGG	2 cut(s)	210, 271
Eco24I	GRGCYC	1 cut(s)	267
Eco31I	GGTCTC	1 cut(s)	162
Eco32I	GATATC	1 cut(s)	596
Eco53kI	GAGCTC	1 cut(s)	265
Eco57I	CTGAAG	3 cut(s)	456, 572, 872
EcoICRI	GAGCTC	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	853
EcoRV	GATATC	1 cut(s)	596
EcoT14I	CCWWGG	2 cut(s)	210, 271
EcoT22I	ATGCAT	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	2 cut(s)	210, 271
Esp3I	CGTCTC	1 cut(s)	365
FaeI	CATG	9 cut(s)	84, 275, 346, 485, 509, 799, 817, 1039, 1078
FaqI	GGGAC	2 cut(s)	530, 574
FatI	CATG	9 cut(s)	80, 271, 342, 481, 505, 795, 813, 1035, 1074
FauNDI	CATATG	1 cut(s)	613
FbaI	TGATCA	2 cut(s)	109, 1024
Fnu4HI	GCNGC	4 cut(s)	95, 252, 255, 843
FokI	GGATG	3 cut(s)	27, 31, 458
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	4 cut(s)	95, 252, 255, 843
FspBI	CTAG	4 cut(s)	11, 200, 539, 1178
GluI	GCNGC	4 cut(s)	95, 252, 255, 843
GsaI	CCCAGC	1 cut(s)	933
GsuI	CTGGAG	1 cut(s)	732
HaeIII	GGCC	2 cut(s)	162, 380
HgaI	GACGC	1 cut(s)	1089
Hin1II	CATG	9 cut(s)	84, 275, 346, 485, 509, 799, 817, 1039, 1078
HinfI	GANTC	4 cut(s)	203, 242, 461, 1130
HphI	GGTGA	4 cut(s)	307, 680, 860, 902
Hpy166II	GTNNAC	3 cut(s)	689, 851, 910
Hpy188I	TCNGA	5 cut(s)	39, 262, 304, 681, 891
Hpy188III	TCNNGA	8 cut(s)	200, 221, 468, 711, 796, 828, 1028, 1046
Hpy8I	GTNNAC	3 cut(s)	689, 851, 910
Hpy99I	CGWCG	1 cut(s)	1083
HpyAV	CCTTC	4 cut(s)	465, 640, 896, 969
HpyCH4III	ACNGT	2 cut(s)	577, 637
HpyCH4V	TGCA	7 cut(s)	22, 80, 89, 284, 456, 1115, 1169
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 486, 1089, 1121
HpyF3I	CTNAG	4 cut(s)	261, 301, 441, 722
Hsp92II	CATG	9 cut(s)	84, 275, 346, 485, 509, 799, 817, 1039, 1078
Ksp22I	TGATCA	2 cut(s)	109, 1024
Kzo9I	GATC	8 cut(s)	109, 217, 882, 990, 1006, 1024, 1071, 1155
LguI	GCTCTTC	1 cut(s)	272
LmnI	GCTCC	5 cut(s)	649, 713, 978, 1147, 1186
Lsp1109I	GCAGC	3 cut(s)	106, 238, 854
LweI	GCATC	5 cut(s)	9, 31, 266, 525, 1156
MabI	ACCWGGT	1 cut(s)	853
MaeI	CTAG	4 cut(s)	11, 200, 539, 1178
MaeIII	GTNAC	1 cut(s)	6
MalI	GATC	8 cut(s)	111, 219, 884, 992, 1008, 1026, 1073, 1157
MboI	GATC	8 cut(s)	109, 217, 882, 990, 1006, 1024, 1071, 1155
MflI	RGATCY	1 cut(s)	882
MhlI	GDGCHC	3 cut(s)	267, 1126, 1152
MluCI	AATT	3 cut(s)	184, 450, 703
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	5 cut(s)	71, 370, 648, 724, 1113
Mph1103I	ATGCAT	1 cut(s)	24
MseI	TTAA	2 cut(s)	153, 524
MslI	CAYNNNNRTG	2 cut(s)	347, 816
MspA1I	CMGCKG	2 cut(s)	845, 863
MspR9I	CCNGG	1 cut(s)	855
Mva1269I	GAATGC	1 cut(s)	823
MvaI	CCWGG	1 cut(s)	855
MwoI	GCNNNNNNNGC	4 cut(s)	86, 486, 1089, 1121
NcoI	CCATGG	1 cut(s)	271
NdeI	CATATG	1 cut(s)	613
NdeII	GATC	8 cut(s)	109, 217, 882, 990, 1006, 1024, 1071, 1155
NlaIII	CATG	9 cut(s)	84, 275, 346, 485, 509, 799, 817, 1039, 1078
NlaIV	GGNNCC	1 cut(s)	1123
NsiI	ATGCAT	1 cut(s)	24
NspI	RCATGY	2 cut(s)	84, 346
NspV	TTCGAA	1 cut(s)	181
PagI	TCATGA	1 cut(s)	795
PciSI	GCTCTTC	1 cut(s)	272
PcsI	WCGNNNNNNNCGW	1 cut(s)	31
PctI	GAATGC	1 cut(s)	823
PfeI	GAWTC	4 cut(s)	203, 242, 461, 1130
PflFI	GACNNNGTC	1 cut(s)	308
PkrI	GCNGC	4 cut(s)	96, 253, 256, 844
Psp124BI	GAGCTC	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	853
PspFI	CCCAGC	1 cut(s)	929
PspGI	CCWGG	1 cut(s)	853
PspN4I	GGNNCC	1 cut(s)	1123
PstNI	CAGNNNCTG	1 cut(s)	845
PsuI	RGATCY	1 cut(s)	882
PsyI	GACNNNGTC	1 cut(s)	308
PvuII	CAGCTG	1 cut(s)	845
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
RseI	CAYNNNNRTG	2 cut(s)	347, 816
SacI	GAGCTC	1 cut(s)	267
SapI	GCTCTTC	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	153, 524
SatI	GCNGC	4 cut(s)	95, 252, 255, 843
Sau3AI	GATC	8 cut(s)	109, 217, 882, 990, 1006, 1024, 1071, 1155
ScrFI	CCNGG	1 cut(s)	855
SduI	GDGCHC	3 cut(s)	267, 1126, 1152
SexAI	ACCWGGT	1 cut(s)	853
SfaNI	GCATC	5 cut(s)	9, 31, 266, 525, 1156
SfcI	CTRYAG	2 cut(s)	573, 837
SfuI	TTCGAA	1 cut(s)	181
SmiMI	CAYNNNNRTG	2 cut(s)	347, 816
Sse9I	AATT	3 cut(s)	184, 450, 703
SsiI	CCGC	2 cut(s)	254, 863
SspMI	CTAG	4 cut(s)	11, 200, 539, 1178
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	1 cut(s)	853
StyI	CCWWGG	2 cut(s)	210, 271
TaaI	ACNGT	2 cut(s)	577, 637
TaqI	TCGA	5 cut(s)	25, 105, 181, 829, 923
TaqII	GACCGA	1 cut(s)	710
TasI	AATT	3 cut(s)	184, 450, 703
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	4 cut(s)	203, 242, 461, 1130
Tru1I	TTAA	2 cut(s)	153, 524
Tru9I	TTAA	2 cut(s)	153, 524
TscAI	CASTG	4 cut(s)	342, 367, 988, 1157
TseI	GCWGC	3 cut(s)	94, 251, 842
TspGWI	ACGGA	1 cut(s)	389
TspRI	CASTG	4 cut(s)	342, 367, 988, 1157
Tth111I	GACNNNGTC	1 cut(s)	308
XapI	RAATTY	2 cut(s)	184, 450
XbaI	TCTAGA	1 cut(s)	199
XceI	RCATGY	2 cut(s)	84, 346
XcmI	CCANNNNNNNNNTGG	2 cut(s)	488, 1115
XspI	CTAG	4 cut(s)	11, 200, 539, 1178
Zsp2I	ATGCAT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.