Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8344809.1

Orthogroup ID

OG0002629

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 884

Gene Structure 884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8344809.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 800 bp

ggaatccttgtatctgcctttcagctcagccatcagatgatgaccaagatgcctatacaaagccaaccatccgttacagatatggatctacattcctagagccacctaggaaggaccaaaagaaatctttttctgaatctgaagacaggagagaagaagaaacatctgctattgtctcagagctgtttcatggctttctcaccattggaactcttggctcggaaacaagtgccaatgaaccagcaacaccaacgtttgcaacacctttggagaacctaactgagagaaaaacagaggtcacagaaaatgacttgaagctcatcaactatgagctagagaggtttcttgaggctgagacaagggaagatccatcatcagcgaggaacagtcatgttagcagtattacactcagtggcatgcaaatggaggactctgaaggtgaagagtactgtgcagcaacagtggtatgtcccctccaaggatatctgcttgggtcctcagttgaattgccagaaatgagaacagaagcaaagaaagaaaaggcatcactacaagagctgtttgataggacaaaagtgactgaaaatttcaagagaagtgaggagaaagatcccaagcaaaaacgtaaatctgccatggattccatgaagaagataataaaaaaactctatgcttcttccaagagctccacttctactagtggtcattcaaatgatcctgtttccatcatgaagaaacttggtgaggcatctgattctgtttcaaccaagaagaaaccccataaggttgggttcccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009959 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

265

Amino Acids

29.63

Weight (kDa)

5.5

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14090 AT5G14090
fragaria_vesca	FvH4_4g23460 FvH4_6g53810
malus_domestica	MD09G1008500.v1.1 MD13G1122400.v1.1 MD16G1122900.v1.1 MD17G1002300.v1.1
prunus_persica	Prupe.1G222800_v2.0.a1 Prupe.1G222800_v2.0.a1 Prupe.3G308500_v2.0.a1 Prupe.3G308500_v2.0.a1
pyrus_communis	pycom111g00680 pycom16g10510
rosa_chinensis	RchiOBHm_Chr4g0429831
rosa_laevigata	RLG00000007040 RLG00000022367
rosa_multiflora	Rmu_co8344809.1_g000001 Rmu_sc0006762.1_g000005 Rmu_sc0012106.1_g000002 Rmu_sc0018638.1_g000001 Rmu_sc0018801.1_g000006 Rmu_sc0037594.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076940 Rroxscaffold_5G00371590
rosa_rugosa	Rorug02G0588700 Rorug02G0588800 Rorug04G0238500 Rorug04G0238500 Rorug04G0238500
rosa_samantha	Rh2AG668000 Rh2BG679500 Rh2CG642300 Rh2DG693000 Rh4AG294700 Rh4BG301100 Rh4CG316300 Rh4DG298000
rosa_wichuraiana	Rw2G054760 Rw4G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	253
AclWI	GGATC	4 cut(s)	93, 361, 604, 709
AcsI	RAATTY	1 cut(s)	585
AcuI	CTGAAG	2 cut(s)	161, 455
AdeI	CACNNNGTG	1 cut(s)	412
AfaI	GTAC	1 cut(s)	448
AfiI	CCNNNNNNNGG	1 cut(s)	478
AgsI	TTSAA	5 cut(s)	315, 505, 591, 710, 764
AhlI	ACTAGT	1 cut(s)	697
AluBI	AGCT	6 cut(s)	25, 183, 318, 333, 558, 686
AluI	AGCT	6 cut(s)	25, 183, 318, 333, 558, 686
Alw21I	GWGCWC	1 cut(s)	688
Alw26I	GTCTC	2 cut(s)	180, 349
AlwI	GGATC	4 cut(s)	93, 361, 604, 709
ApeKI	GCWGC	1 cut(s)	454
ApoI	RAATTY	1 cut(s)	585
AspA2I	CCTAGG	1 cut(s)	106
AspS9I	GGNCC	2 cut(s)	114, 494
AsuHPI	GGTGA	3 cut(s)	192, 451, 754
AvaII	GGWCC	2 cut(s)	114, 494
AvrII	CCTAGG	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	688
BbsI	GAAGAC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	688
BbvI	GCAGC	1 cut(s)	466
BccI	CCATC	4 cut(s)	39, 76, 378, 733
BcoDI	GTCTC	2 cut(s)	180, 349
BcuI	ACTAGT	1 cut(s)	697
BfaI	CTAG	4 cut(s)	97, 107, 334, 698
BisI	GCNGC	1 cut(s)	455
BlnI	CCTAGG	1 cut(s)	106
BlpI	GCTNAGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	456
BmcAI	AGTACT	1 cut(s)	448
Bme18I	GGWCC	2 cut(s)	114, 494
BmgT120I	GGNCC	2 cut(s)	114, 494
BmiI	GGNNCC	2 cut(s)	495, 793
BmsI	GCATC	3 cut(s)	39, 553, 757
BpiI	GAAGAC	1 cut(s)	149
Bpu1102I	GCTNAGC	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	367
BsaBI	GATNNNNATC	1 cut(s)	84
BsaJI	CCNNGG	3 cut(s)	106, 477, 635
Bsc4I	CCNNNNNNNGG	1 cut(s)	478
Bse8I	GATNNNNATC	1 cut(s)	84
BseDI	CCNNGG	3 cut(s)	106, 477, 635
BseGI	GGATG	1 cut(s)	68
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	478
BseMII	CTCAG	6 cut(s)	40, 191, 272, 344, 423, 512
BseRI	GAGGAG	1 cut(s)	616
BseXI	GCAGC	1 cut(s)	466
BsgI	GTGCAG	1 cut(s)	473
BsiHKAI	GWGCWC	1 cut(s)	688
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	1 cut(s)	478
BsmAI	GTCTC	2 cut(s)	180, 349
BsmFI	GGGAC	1 cut(s)	455
Bsp1286I	GDGCHC	1 cut(s)	688
Bsp143I	GATC	4 cut(s)	85, 366, 609, 714
Bsp1720I	GCTNAGC	1 cut(s)	26
Bsp19I	CCATGG	1 cut(s)	635
BspCNI	CTCAG	6 cut(s)	39, 190, 273, 345, 422, 511
BspHI	TCATGA	1 cut(s)	728
BspLI	GGNNCC	2 cut(s)	495, 793
BspPI	GGATC	4 cut(s)	93, 361, 604, 709
BssECI	CCNNGG	3 cut(s)	106, 477, 635
BssMI	GATC	4 cut(s)	85, 366, 609, 714
BssT1I	CCWWGG	3 cut(s)	106, 477, 635
Bst4CI	ACNGT	3 cut(s)	388, 451, 462
Bst6I	CTCTTC	1 cut(s)	437
BstC8I	GCNNGC	1 cut(s)	418
BstDEI	CTNAG	6 cut(s)	26, 177, 281, 353, 409, 498
BstDSI	CCRYGG	1 cut(s)	635
BstF5I	GGATG	1 cut(s)	68
BstKTI	GATC	4 cut(s)	88, 369, 612, 717
BstMAI	GTCTC	2 cut(s)	180, 349
BstMBI	GATC	4 cut(s)	85, 366, 609, 714
BstNSI	RCATGY	1 cut(s)	420
BstV1I	GCAGC	1 cut(s)	466
BstV2I	GAAGAC	1 cut(s)	149
BstX2I	RGATCY	3 cut(s)	85, 366, 609
BstXI	CCANNNNNNTGG	1 cut(s)	787
BstYI	RGATCY	3 cut(s)	85, 366, 609
BtgI	CCRYGG	1 cut(s)	635
BtsCI	GGATG	1 cut(s)	68
BtsIMutI	CAGTG	2 cut(s)	417, 467
Cac8I	GCNNGC	1 cut(s)	418
CciI	TCATGA	1 cut(s)	728
Cfr13I	GGNCC	2 cut(s)	114, 494
Csp6I	GTAC	1 cut(s)	447
CviAII	CATG	6 cut(s)	190, 391, 417, 636, 645, 729
CviQI	GTAC	1 cut(s)	447
DdeI	CTNAG	6 cut(s)	26, 177, 281, 353, 409, 498
DpnI	GATC	4 cut(s)	87, 368, 611, 716
DpnII	GATC	4 cut(s)	85, 366, 609, 714
DraIII	CACNNNGTG	1 cut(s)	412
Eam1104I	CTCTTC	1 cut(s)	437
EarI	CTCTTC	1 cut(s)	437
Ecl136II	GAGCTC	1 cut(s)	686
Eco130I	CCWWGG	3 cut(s)	106, 477, 635
Eco24I	GRGCYC	1 cut(s)	688
Eco32I	GATATC	1 cut(s)	484
Eco47I	GGWCC	2 cut(s)	114, 494
Eco53kI	GAGCTC	1 cut(s)	686
Eco57I	CTGAAG	2 cut(s)	161, 455
EcoICRI	GAGCTC	1 cut(s)	686
EcoO109I	RGGNCCY	1 cut(s)	494
EcoRV	GATATC	1 cut(s)	484
EcoT14I	CCWWGG	3 cut(s)	106, 477, 635
EcoT38I	GRGCYC	1 cut(s)	688
ErhI	CCWWGG	3 cut(s)	106, 477, 635
FaeI	CATG	6 cut(s)	193, 394, 420, 639, 648, 732
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	6 cut(s)	189, 390, 416, 635, 644, 728
Fnu4HI	GCNGC	1 cut(s)	455
FokI	GGATG	1 cut(s)	55
FriOI	GRGCYC	1 cut(s)	688
Fsp4HI	GCNGC	1 cut(s)	455
FspBI	CTAG	4 cut(s)	97, 107, 334, 698
GluI	GCNGC	1 cut(s)	455
Hin1II	CATG	6 cut(s)	193, 394, 420, 639, 648, 732
HinfI	GANTC	5 cut(s)	3, 136, 430, 640, 754
HphI	GGTGA	3 cut(s)	192, 451, 754
Hpy188I	TCNGA	7 cut(s)	36, 135, 141, 180, 222, 435, 753
Hpy188III	TCNNGA	3 cut(s)	346, 591, 729
HpyAV	CCTTC	2 cut(s)	105, 430
HpyCH4III	ACNGT	3 cut(s)	388, 451, 462
HpyCH4IV	ACGT	2 cut(s)	253, 624
HpyCH4V	TGCA	3 cut(s)	259, 420, 454
HpyF3I	CTNAG	6 cut(s)	26, 177, 281, 353, 409, 498
HpySE526I	ACGT	2 cut(s)	253, 624
Hsp92II	CATG	6 cut(s)	193, 394, 420, 639, 648, 732
Kzo9I	GATC	4 cut(s)	85, 366, 609, 714
LmnI	GCTCC	1 cut(s)	691
LpnPI	CCDG	4 cut(s)	132, 254, 524, 731
Lsp1109I	GCAGC	1 cut(s)	466
LweI	GCATC	3 cut(s)	39, 553, 757
MaeI	CTAG	4 cut(s)	97, 107, 334, 698
MaeII	ACGT	2 cut(s)	253, 624
MaeIII	GTNAC	3 cut(s)	73, 297, 576
MalI	GATC	4 cut(s)	87, 368, 611, 716
MboI	GATC	4 cut(s)	85, 366, 609, 714
MflI	RGATCY	3 cut(s)	85, 366, 609
MhlI	GDGCHC	1 cut(s)	688
MluCI	AATT	2 cut(s)	505, 585
MlyI	GAGTC	1 cut(s)	424
MnlI	CCTC	9 cut(s)	288, 332, 342, 374, 420, 484, 507, 594, 738
MslI	CAYNNNNRTG	2 cut(s)	421, 710
NcoI	CCATGG	1 cut(s)	635
NdeII	GATC	4 cut(s)	85, 366, 609, 714
NlaIII	CATG	6 cut(s)	193, 394, 420, 639, 648, 732
NlaIV	GGNNCC	2 cut(s)	495, 793
NmuCI	GTSAC	2 cut(s)	297, 576
NspI	RCATGY	1 cut(s)	420
PaeI	GCATGC	1 cut(s)	420
PagI	TCATGA	1 cut(s)	728
PfeI	GAWTC	4 cut(s)	3, 136, 640, 754
PkrI	GCNGC	1 cut(s)	456
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
PpuMI	RGGWCCY	1 cut(s)	494
Psp124BI	GAGCTC	1 cut(s)	688
Psp1406I	AACGTT	1 cut(s)	253
Psp5II	RGGWCCY	1 cut(s)	494
PspN4I	GGNNCC	2 cut(s)	495, 793
PspPI	GGNCC	2 cut(s)	114, 494
PspPPI	RGGWCCY	1 cut(s)	494
PsuI	RGATCY	3 cut(s)	85, 366, 609
RsaI	GTAC	1 cut(s)	448
RsaNI	GTAC	1 cut(s)	447
RseI	CAYNNNNRTG	2 cut(s)	421, 710
SacI	GAGCTC	1 cut(s)	688
SatI	GCNGC	1 cut(s)	455
Sau3AI	GATC	4 cut(s)	85, 366, 609, 714
Sau96I	GGNCC	2 cut(s)	114, 494
ScaI	AGTACT	1 cut(s)	448
SchI	GAGTC	1 cut(s)	424
SduI	GDGCHC	1 cut(s)	688
SfaNI	GCATC	3 cut(s)	39, 553, 757
SinI	GGWCC	2 cut(s)	114, 494
SmiMI	CAYNNNNRTG	2 cut(s)	421, 710
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
SpeI	ACTAGT	1 cut(s)	697
SphI	GCATGC	1 cut(s)	420
Sse9I	AATT	2 cut(s)	505, 585
SspMI	CTAG	4 cut(s)	97, 107, 334, 698
SstI	GAGCTC	1 cut(s)	688
StyI	CCWWGG	3 cut(s)	106, 477, 635
TaaI	ACNGT	3 cut(s)	388, 451, 462
TaiI	ACGT	2 cut(s)	256, 627
TasI	AATT	2 cut(s)	505, 585
TatI	WGTACW	1 cut(s)	446
TfiI	GAWTC	4 cut(s)	3, 136, 640, 754
TscAI	CASTG	2 cut(s)	417, 467
TseFI	GTSAC	2 cut(s)	297, 576
TseI	GCWGC	1 cut(s)	454
Tsp45I	GTSAC	2 cut(s)	297, 576
TspDTI	ATGAA	4 cut(s)	178, 251, 661, 745
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	2 cut(s)	417, 467
VpaK11BI	GGWCC	2 cut(s)	114, 494
XapI	RAATTY	1 cut(s)	585
XceI	RCATGY	1 cut(s)	420
XmaJI	CCTAGG	1 cut(s)	106
XspI	CTAG	4 cut(s)	97, 107, 334, 698
ZrmI	AGTACT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.