Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002629

Physical Location & Seq

Genomic Coordinates Reverse (-)

82358445 .. 82361431

Gene Structure 2987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G054760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGAAGTTGTTACAATGGGTGCACCAAAAATTTCAGCACAGTAGCATTGAACCTCTCAAGGATCTCAGTATTGCTCAGCCATCAGATGATGACCAAGATGCCTATACAAAGCCAACCATCCATTACAGATATGGATCTACATTCCTAGAGCCACCTAGGAAGGACCAAAAGAAATCTTTTTCTGAATCTGAAGACAGGAGAGAAGAAGAAACATCTGCTATTGTCTCAGAGCTGTTTCATGGCTTTCTCACCATTGGAACTCTTGGCTCGGAAACAAGTGCCAATGAACCAGCAACACCAACGTTTGCAACACCTTTGGAGAACCTAACTGAGAGAAAAACAGAGGTCACAGAAAATGACTTGAAGCTCATCAACTATGAGCTAGAGAGGTTTCTTGAGGCTGAGACAAGGGAAGATCCATCATCAGCGAGGAACAGTCATGTTAGCAGTATTACACTCAGTGGCATGCAAATGGAGGACTCTGAAGGTGAAGAGTACTGTGCAGCAACAGTGGTATGTCCCCTCCAAGGATATCTGCTTGGGTCCTCAGTTGAATTGCCAGAAATGAGAACAGAAGCAAAGAAAGAAAAGGCATCACTACAAGAGCTGTTTGATAGGACAAAAAAAGATCCCAAGCAAAAACGTAAATCTGCCATGGATTCCATGAAGAAGATAATAAAAAAACTCTATGCTTCTTCCAAGAGCTCCACTTCTACTAGTGGTCATTCAAATGATCCTGTTTCCATCATGAAGAAACTTGGTGAGGCATCTGATTCTGTTTCAACCAAGAAGAAACCCCATAAGGTATTACGTATGTTTCAAAGAAGGATTCATCCTGAAGGCTCTATTGCTGAAAAAGAATTTATCAAGTCCAAGAAATATAAGGACAAGAGCAACTCCAGTAACATTGGTGGTTGTAATAGGAATCTGATACTCATGGGTGCAGAGAACAGAAGGTTACCCCATGAGTCAAGGTTTAAGGAAGGGACCAAACAAAGTAAGAAGTACATGGACTGGCCTCAATACAGGCTGAATGGCAGTGATTTGAGAAGAAATGAAGAGCACTGGATCAAAACAGATGCAGACTGTAAGTATCTTTTCTATTCCATACCATGGCAACATACTTGGTTTAGTTCCTACCAAAAAGGTAACGGTGTACTAGACGTACTTATCTTGTATCAGTGTGATGATGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009959 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

399

Amino Acids

45.76

Weight (kDa)

7.64

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14090 AT5G14090
fragaria_vesca	FvH4_4g23460 FvH4_6g53810
malus_domestica	MD09G1008500.v1.1 MD13G1122400.v1.1 MD16G1122900.v1.1 MD17G1002300.v1.1
prunus_persica	Prupe.1G222800_v2.0.a1 Prupe.1G222800_v2.0.a1 Prupe.3G308500_v2.0.a1 Prupe.3G308500_v2.0.a1
pyrus_communis	pycom111g00680 pycom16g10510
rosa_chinensis	RchiOBHm_Chr4g0429831
rosa_laevigata	RLG00000007040 RLG00000022367
rosa_multiflora	Rmu_co8344809.1_g000001 Rmu_sc0006762.1_g000005 Rmu_sc0012106.1_g000002 Rmu_sc0018638.1_g000001 Rmu_sc0018801.1_g000006 Rmu_sc0037594.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076940 Rroxscaffold_5G00371590
rosa_rugosa	Rorug02G0588700 Rorug02G0588800 Rorug04G0238500 Rorug04G0238500 Rorug04G0238500
rosa_samantha	Rh2AG668000 Rh2BG679500 Rh2CG642300 Rh2DG693000 Rh4AG294700 Rh4BG301100 Rh4CG316300 Rh4DG298000
rosa_wichuraiana	Rw2G054760 Rw4G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1113
AclI	AACGTT	1 cut(s)	302
AclWI	GGATC	6 cut(s)	69, 142, 410, 623, 728, 1076
AcsI	RAATTY	2 cut(s)	29, 860
AcuI	CTGAAG	3 cut(s)	210, 504, 858
AdeI	CACNNNGTG	1 cut(s)	461
AfaI	GTAC	4 cut(s)	497, 1007, 1158, 1167
AfiI	CCNNNNNNNGG	2 cut(s)	527, 1113
AgsI	TTSAA	6 cut(s)	50, 364, 554, 729, 783, 821
AhlI	ACTAGT	1 cut(s)	716
AluBI	AGCT	5 cut(s)	232, 367, 382, 607, 705
AluI	AGCT	5 cut(s)	232, 367, 382, 607, 705
Alw21I	GWGCWC	3 cut(s)	24, 707, 1065
Alw26I	GTCTC	2 cut(s)	229, 398
Alw44I	GTGCAC	1 cut(s)	20
AlwI	GGATC	6 cut(s)	69, 142, 410, 623, 728, 1076
AoxI	GGCC	1 cut(s)	1016
ApaLI	GTGCAC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	503
ApoI	RAATTY	2 cut(s)	29, 860
AspA2I	CCTAGG	1 cut(s)	155
AspS9I	GGNCC	3 cut(s)	163, 543, 987
AsuHPI	GGTGA	3 cut(s)	241, 500, 773
AvaII	GGWCC	3 cut(s)	163, 543, 987
AvrII	CCTAGG	1 cut(s)	155
BaeGI	GKGCMC	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	707
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	3 cut(s)	24, 707, 1065
BbvI	GCAGC	1 cut(s)	515
BccI	CCATC	4 cut(s)	88, 125, 427, 752
BcoDI	GTCTC	2 cut(s)	229, 398
BcuI	ACTAGT	1 cut(s)	716
BfaI	CTAG	5 cut(s)	146, 156, 383, 717, 1160
BisI	GCNGC	1 cut(s)	504
BlnI	CCTAGG	1 cut(s)	155
BlpI	GCTNAGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	505
BmcAI	AGTACT	1 cut(s)	497
Bme18I	GGWCC	3 cut(s)	163, 543, 987
BmgT120I	GGNCC	3 cut(s)	163, 543, 987
BmiI	GGNNCC	2 cut(s)	544, 988
BmsI	GCATC	4 cut(s)	88, 602, 776, 1069
BpiI	GAAGAC	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	883
Bpu1102I	GCTNAGC	1 cut(s)	75
BpuEI	CTTGAG	2 cut(s)	41, 416
BsaAI	YACGTR	1 cut(s)	812
BsaBI	GATNNNNATC	1 cut(s)	133
BsaJI	CCNNGG	4 cut(s)	155, 526, 654, 1112
Bsc4I	CCNNNNNNNGG	2 cut(s)	527, 1113
Bse1I	ACTGG	3 cut(s)	900, 1019, 1070
Bse8I	GATNNNNATC	1 cut(s)	133
BseDI	CCNNGG	4 cut(s)	155, 526, 654, 1112
BseGI	GGATG	2 cut(s)	117, 832
BseJI	GATNNNNATC	1 cut(s)	133
BseLI	CCNNNNNNNGG	2 cut(s)	527, 1113
BseMII	CTCAG	7 cut(s)	79, 89, 240, 321, 393, 472, 561
BseNI	ACTGG	3 cut(s)	900, 1019, 1070
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	515
BsgI	GTGCAG	2 cut(s)	522, 963
BshFI	GGCC	1 cut(s)	1018
BsiHKAI	GWGCWC	3 cut(s)	24, 707, 1065
BslFI	GGGAC	2 cut(s)	504, 1000
BslI	CCNNNNNNNGG	2 cut(s)	527, 1113
BsmAI	GTCTC	2 cut(s)	229, 398
BsmFI	GGGAC	2 cut(s)	504, 1000
BsnI	GGCC	1 cut(s)	1018
Bsp1286I	GDGCHC	3 cut(s)	24, 707, 1065
Bsp143I	GATC	6 cut(s)	61, 134, 415, 628, 733, 1068
Bsp1720I	GCTNAGC	1 cut(s)	75
Bsp19I	CCATGG	2 cut(s)	654, 1112
BspANI	GGCC	1 cut(s)	1018
BspCNI	CTCAG	7 cut(s)	78, 88, 239, 322, 394, 471, 560
BspHI	TCATGA	1 cut(s)	747
BspLI	GGNNCC	2 cut(s)	544, 988
BspPI	GGATC	6 cut(s)	69, 142, 410, 623, 728, 1076
BspQI	GCTCTTC	1 cut(s)	1053
BsrI	ACTGG	3 cut(s)	900, 1019, 1070
BssECI	CCNNGG	4 cut(s)	155, 526, 654, 1112
BssMI	GATC	6 cut(s)	61, 134, 415, 628, 733, 1068
BssT1I	CCWWGG	4 cut(s)	155, 526, 654, 1112
Bst4CI	ACNGT	6 cut(s)	41, 437, 500, 511, 1088, 1154
Bst6I	CTCTTC	2 cut(s)	486, 1053
BstBAI	YACGTR	1 cut(s)	812
BstC8I	GCNNGC	1 cut(s)	467
BstDEI	CTNAG	7 cut(s)	65, 75, 226, 330, 402, 458, 547
BstDSI	CCRYGG	2 cut(s)	654, 1112
BstEII	GGTNACC	1 cut(s)	957
BstF5I	GGATG	2 cut(s)	117, 832
BstKTI	GATC	6 cut(s)	64, 137, 418, 631, 736, 1071
BstMAI	GTCTC	2 cut(s)	229, 398
BstMBI	GATC	6 cut(s)	61, 134, 415, 628, 733, 1068
BstNSI	RCATGY	1 cut(s)	469
BstPI	GGTNACC	1 cut(s)	957
BstSLI	GKGCMC	1 cut(s)	24
BstSNI	TACGTA	1 cut(s)	812
BstV1I	GCAGC	1 cut(s)	515
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	4 cut(s)	61, 134, 415, 628
BstYI	RGATCY	4 cut(s)	61, 134, 415, 628
BsuRI	GGCC	1 cut(s)	1018
BtgI	CCRYGG	2 cut(s)	654, 1112
BtsCI	GGATG	2 cut(s)	117, 832
BtsI	GCAGTG	1 cut(s)	1045
BtsIMutI	CAGTG	5 cut(s)	466, 516, 1045, 1063, 1187
Cac8I	GCNNGC	1 cut(s)	467
CciI	TCATGA	1 cut(s)	747
Cfr13I	GGNCC	3 cut(s)	163, 543, 987
Csp6I	GTAC	4 cut(s)	496, 1006, 1157, 1166
CviQI	GTAC	4 cut(s)	496, 1006, 1157, 1166
DdeI	CTNAG	7 cut(s)	65, 75, 226, 330, 402, 458, 547
DpnI	GATC	6 cut(s)	63, 136, 417, 630, 735, 1070
DpnII	GATC	6 cut(s)	61, 134, 415, 628, 733, 1068
DraIII	CACNNNGTG	1 cut(s)	461
Eam1104I	CTCTTC	2 cut(s)	486, 1053
EarI	CTCTTC	2 cut(s)	486, 1053
Ecl136II	GAGCTC	1 cut(s)	705
Eco105I	TACGTA	1 cut(s)	812
Eco130I	CCWWGG	4 cut(s)	155, 526, 654, 1112
Eco24I	GRGCYC	1 cut(s)	707
Eco32I	GATATC	1 cut(s)	533
Eco47I	GGWCC	3 cut(s)	163, 543, 987
Eco53kI	GAGCTC	1 cut(s)	705
Eco57I	CTGAAG	3 cut(s)	210, 504, 858
Eco91I	GGTNACC	1 cut(s)	957
EcoICRI	GAGCTC	1 cut(s)	705
EcoO109I	RGGNCCY	1 cut(s)	543
EcoO65I	GGTNACC	1 cut(s)	957
EcoRV	GATATC	1 cut(s)	533
EcoT14I	CCWWGG	4 cut(s)	155, 526, 654, 1112
EcoT38I	GRGCYC	1 cut(s)	707
ErhI	CCWWGG	4 cut(s)	155, 526, 654, 1112
FaqI	GGGAC	2 cut(s)	504, 1000
Fnu4HI	GCNGC	1 cut(s)	504
FokI	GGATG	2 cut(s)	104, 819
FriOI	GRGCYC	1 cut(s)	707
Fsp4HI	GCNGC	1 cut(s)	504
FspBI	CTAG	5 cut(s)	146, 156, 383, 717, 1160
GluI	GCNGC	1 cut(s)	504
GsuI	CTGGAG	1 cut(s)	883
HaeIII	GGCC	1 cut(s)	1018
HinfI	GANTC	7 cut(s)	185, 479, 659, 773, 829, 925, 968
HphI	GGTGA	3 cut(s)	241, 500, 773
Hpy166II	GTNNAC	2 cut(s)	22, 1157
Hpy188I	TCNGA	8 cut(s)	85, 184, 190, 229, 271, 484, 772, 930
Hpy188III	TCNNGA	3 cut(s)	395, 748, 836
Hpy8I	GTNNAC	2 cut(s)	22, 1157
HpyAV	CCTTC	6 cut(s)	154, 479, 819, 833, 948, 977
HpyCH4III	ACNGT	6 cut(s)	41, 437, 500, 511, 1088, 1154
HpyCH4IV	ACGT	4 cut(s)	302, 643, 811, 1164
HpyCH4V	TGCA	6 cut(s)	22, 308, 469, 503, 944, 1082
HpyF3I	CTNAG	7 cut(s)	65, 75, 226, 330, 402, 458, 547
HpySE526I	ACGT	4 cut(s)	302, 643, 811, 1164
Kzo9I	GATC	6 cut(s)	61, 134, 415, 628, 733, 1068
LguI	GCTCTTC	1 cut(s)	1053
LmnI	GCTCC	1 cut(s)	710
LpnPI	CCDG	9 cut(s)	181, 303, 573, 750, 849, 913, 1000, 1012, 1051
Lsp1109I	GCAGC	1 cut(s)	515
LweI	GCATC	4 cut(s)	88, 602, 776, 1069
MaeI	CTAG	5 cut(s)	146, 156, 383, 717, 1160
MaeII	ACGT	4 cut(s)	302, 643, 811, 1164
MaeIII	GTNAC	5 cut(s)	9, 346, 902, 957, 1148
MalI	GATC	6 cut(s)	63, 136, 417, 630, 735, 1070
MboI	GATC	6 cut(s)	61, 134, 415, 628, 733, 1068
MflI	RGATCY	4 cut(s)	61, 134, 415, 628
MhlI	GDGCHC	3 cut(s)	24, 707, 1065
MluCI	AATT	3 cut(s)	29, 554, 860
MlyI	GAGTC	2 cut(s)	473, 977
MseI	TTAA	1 cut(s)	978
MslI	CAYNNNNRTG	2 cut(s)	470, 729
NcoI	CCATGG	2 cut(s)	654, 1112
NdeII	GATC	6 cut(s)	61, 134, 415, 628, 733, 1068
NlaIV	GGNNCC	2 cut(s)	544, 988
NmuCI	GTSAC	1 cut(s)	346
NspI	RCATGY	1 cut(s)	469
PaeI	GCATGC	1 cut(s)	469
PagI	TCATGA	1 cut(s)	747
PciSI	GCTCTTC	1 cut(s)	1053
PfeI	GAWTC	5 cut(s)	185, 659, 773, 829, 925
PflMI	CCANNNNNTGG	1 cut(s)	1113
PkrI	GCNGC	1 cut(s)	505
PleI	GAGTC	2 cut(s)	473, 976
PpsI	GAGTC	2 cut(s)	473, 976
Ppu21I	YACGTR	1 cut(s)	812
PpuMI	RGGWCCY	1 cut(s)	543
Psp124BI	GAGCTC	1 cut(s)	707
Psp1406I	AACGTT	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	543
PspEI	GGTNACC	1 cut(s)	957
PspN4I	GGNNCC	2 cut(s)	544, 988
PspPI	GGNCC	3 cut(s)	163, 543, 987
PspPPI	RGGWCCY	1 cut(s)	543
PsuI	RGATCY	4 cut(s)	61, 134, 415, 628
RsaI	GTAC	4 cut(s)	497, 1007, 1158, 1167
RsaNI	GTAC	4 cut(s)	496, 1006, 1157, 1166
RseI	CAYNNNNRTG	2 cut(s)	470, 729
SacI	GAGCTC	1 cut(s)	707
SapI	GCTCTTC	1 cut(s)	1053
SaqAI	TTAA	1 cut(s)	978
SatI	GCNGC	1 cut(s)	504
Sau3AI	GATC	6 cut(s)	61, 134, 415, 628, 733, 1068
Sau96I	GGNCC	3 cut(s)	163, 543, 987
ScaI	AGTACT	1 cut(s)	497
SchI	GAGTC	2 cut(s)	473, 977
SduI	GDGCHC	3 cut(s)	24, 707, 1065
SfaNI	GCATC	4 cut(s)	88, 602, 776, 1069
SinI	GGWCC	3 cut(s)	163, 543, 987
SmiMI	CAYNNNNRTG	2 cut(s)	470, 729
SmlI	CTYRAG	2 cut(s)	56, 395
SmoI	CTYRAG	2 cut(s)	56, 395
SnaBI	TACGTA	1 cut(s)	812
SpeI	ACTAGT	1 cut(s)	716
SphI	GCATGC	1 cut(s)	469
Sse9I	AATT	3 cut(s)	29, 554, 860
SspMI	CTAG	5 cut(s)	146, 156, 383, 717, 1160
SstI	GAGCTC	1 cut(s)	707
StyI	CCWWGG	4 cut(s)	155, 526, 654, 1112
TaaI	ACNGT	6 cut(s)	41, 437, 500, 511, 1088, 1154
TaiI	ACGT	4 cut(s)	305, 646, 814, 1167
TasI	AATT	3 cut(s)	29, 554, 860
TatI	WGTACW	3 cut(s)	495, 1005, 1156
TfiI	GAWTC	5 cut(s)	185, 659, 773, 829, 925
Tru1I	TTAA	1 cut(s)	978
Tru9I	TTAA	1 cut(s)	978
TscAI	CASTG	5 cut(s)	466, 516, 1045, 1070, 1187
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	1 cut(s)	503
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	7 cut(s)	17, 227, 300, 680, 764, 821, 1071
TspRI	CASTG	5 cut(s)	466, 516, 1045, 1070, 1187
Van91I	CCANNNNNTGG	1 cut(s)	1113
VneI	GTGCAC	1 cut(s)	20
VpaK11BI	GGWCC	3 cut(s)	163, 543, 987
XapI	RAATTY	2 cut(s)	29, 860
XceI	RCATGY	1 cut(s)	469
XcmI	CCANNNNNNNNNTGG	1 cut(s)	128
XmaJI	CCTAGG	1 cut(s)	155
XspI	CTAG	5 cut(s)	146, 156, 383, 717, 1160
ZrmI	AGTACT	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.