Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002629

Physical Location & Seq

Genomic Coordinates Reverse (-)

88946403 .. 88948952

Gene Structure 2550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG679500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGAAGTTGTTACAATGGGTGCACCAAAAATTTCAGCACAGTAGCATTGAACCTCTCAAGGATCTCAGTATTGGGAATCCTTGTATCTGCCTTTCAGCTCAGCCATCAGATGATGACCAAGATGCCTATACAAAGCCAACCATCCGTTACAGATATGGATCTACATTCCTAGAGCCACCTAGGAAGGACCAAAAGAAATCTTTTTCTGAATCTGAAGACAGGAGAGAAGAAGAAACATCTGCTATTGTCTCAGAGCTGTTTCATGGCTTTCTCACCATTGGAACTCTTGGCTCGGAAACAATTGCCAATGAACCAGCAACACCAACGTTTGCAACACCTTTAGAGAACCTAACTGAGAAAAAAACAGAGGTCACAGAAAATGACTTGAAGCTCATCAACTATGAGCTAGAGAGGTTTCTTGAGGCTGAGACAAGGGAAGATCCATCATCAGCGAGGAACAGTCATGTTAGCAGTATTACACTCAGTGGCATGCAAATGGAGGACTCTGAAGATGAAGAGTACTGTGCAGCAACAGTGGTATGTCCCCTCCAAGGATATCTGCTTGGGTCCTCAGTTGAATTGCCAGAAATGAGAACAGAAGCAAAGAAAGAAAAGGCATCACTACAAGAGCTGTTTGATAGGACAAAAGTGACTGAAAATTTCGAGAGAAGTGAGGAGAAAGATCCCAAGCAAAAACGTAAATCTGCCATGGATTCCATGAAGAAGATAATAAAAAAACTCTATGCTTCTTCCAAGAGCTCCACTTCTACTAGTGGTCATTCAAATGATCCTGTTTCCATCATGAAGAAACTTGGTGAGGCATCTGATTCTGTTTCAACCAAGAAGAAACCCCATAAGGTATTACGTATGCTTCAAAGAAGGATTCATCCTGAAGGCTCTATTGCTGAAAAAGAATTTATCAAGTCCAAGAAATACAAGGACAAGAGCAACTCCAGTAACATTGGTGGTTGTAATAGGAATCTGATACTCATGGGTGCAGAGAACAGAAGGTTACCCCATGAGTCAAAGTTTAAGGAAGGGACCAAACAAAGTAAGAAGTACATGGACTGGCCTCAATACAGGCTGAATGGCAGTGATTTGAGAAGAAATGAAGAGCACTGGATCAAAACAGATGCAGACTACTTGGTGTTGGAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009959 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

386

Amino Acids

44.08

Weight (kDa)

6.79

Isoelectric Point (pI)

48.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14090 AT5G14090
fragaria_vesca	FvH4_4g23460 FvH4_6g53810
malus_domestica	MD09G1008500.v1.1 MD13G1122400.v1.1 MD16G1122900.v1.1 MD17G1002300.v1.1
prunus_persica	Prupe.1G222800_v2.0.a1 Prupe.1G222800_v2.0.a1 Prupe.3G308500_v2.0.a1 Prupe.3G308500_v2.0.a1
pyrus_communis	pycom111g00680 pycom16g10510
rosa_chinensis	RchiOBHm_Chr4g0429831
rosa_laevigata	RLG00000007040 RLG00000022367
rosa_multiflora	Rmu_co8344809.1_g000001 Rmu_sc0006762.1_g000005 Rmu_sc0012106.1_g000002 Rmu_sc0018638.1_g000001 Rmu_sc0018801.1_g000006 Rmu_sc0037594.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076940 Rroxscaffold_5G00371590
rosa_rugosa	Rorug02G0588700 Rorug02G0588800 Rorug04G0238500 Rorug04G0238500 Rorug04G0238500
rosa_samantha	Rh2AG668000 Rh2BG679500 Rh2CG642300 Rh2DG693000 Rh4AG294700 Rh4BG301100 Rh4CG316300 Rh4DG298000
rosa_wichuraiana	Rw2G054760 Rw4G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	326
AclWI	GGATC	6 cut(s)	69, 166, 434, 677, 782, 1130
AcsI	RAATTY	3 cut(s)	29, 658, 914
AcuI	CTGAAG	3 cut(s)	234, 528, 912
AdeI	CACNNNGTG	1 cut(s)	485
AfaI	GTAC	2 cut(s)	521, 1061
AfiI	CCNNNNNNNGG	1 cut(s)	551
AgsI	TTSAA	6 cut(s)	50, 388, 578, 783, 837, 875
AhlI	ACTAGT	1 cut(s)	770
AluBI	AGCT	7 cut(s)	98, 256, 391, 406, 631, 759, 1156
AluI	AGCT	7 cut(s)	98, 256, 391, 406, 631, 759, 1156
Alw21I	GWGCWC	3 cut(s)	24, 761, 1119
Alw26I	GTCTC	2 cut(s)	253, 422
Alw44I	GTGCAC	1 cut(s)	20
AlwI	GGATC	6 cut(s)	69, 166, 434, 677, 782, 1130
AoxI	GGCC	1 cut(s)	1070
ApaLI	GTGCAC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	527
ApoI	RAATTY	3 cut(s)	29, 658, 914
AspA2I	CCTAGG	1 cut(s)	179
AspS9I	GGNCC	3 cut(s)	187, 567, 1041
AsuHPI	GGTGA	2 cut(s)	265, 827
AvaII	GGWCC	3 cut(s)	187, 567, 1041
AvrII	CCTAGG	1 cut(s)	179
BaeGI	GKGCMC	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	761
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	3 cut(s)	24, 761, 1119
BbvI	GCAGC	1 cut(s)	539
BccI	CCATC	4 cut(s)	112, 149, 451, 806
BcoDI	GTCTC	2 cut(s)	253, 422
BcuI	ACTAGT	1 cut(s)	770
BfaI	CTAG	4 cut(s)	170, 180, 407, 771
BfmI	CTRYAG	1 cut(s)	1157
BisI	GCNGC	1 cut(s)	528
BlnI	CCTAGG	1 cut(s)	179
BlpI	GCTNAGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	529
BmcAI	AGTACT	1 cut(s)	521
Bme18I	GGWCC	3 cut(s)	187, 567, 1041
BmgT120I	GGNCC	3 cut(s)	187, 567, 1041
BmiI	GGNNCC	2 cut(s)	568, 1042
BmsI	GCATC	4 cut(s)	112, 626, 830, 1123
BpiI	GAAGAC	1 cut(s)	222
BpmI	CTGGAG	1 cut(s)	937
Bpu1102I	GCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	2 cut(s)	41, 440
BsaAI	YACGTR	1 cut(s)	866
BsaBI	GATNNNNATC	1 cut(s)	157
BsaJI	CCNNGG	3 cut(s)	179, 550, 708
Bsc4I	CCNNNNNNNGG	1 cut(s)	551
Bse1I	ACTGG	3 cut(s)	954, 1073, 1124
Bse8I	GATNNNNATC	1 cut(s)	157
BseDI	CCNNGG	3 cut(s)	179, 550, 708
BseGI	GGATG	2 cut(s)	141, 886
BseJI	GATNNNNATC	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	551
BseMII	CTCAG	7 cut(s)	79, 113, 264, 345, 417, 496, 585
BseNI	ACTGG	3 cut(s)	954, 1073, 1124
BseRI	GAGGAG	1 cut(s)	689
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	539
BsgI	GTGCAG	2 cut(s)	546, 1017
BshFI	GGCC	1 cut(s)	1072
BsiHKAI	GWGCWC	3 cut(s)	24, 761, 1119
BslFI	GGGAC	2 cut(s)	528, 1054
BslI	CCNNNNNNNGG	1 cut(s)	551
BsmAI	GTCTC	2 cut(s)	253, 422
BsmFI	GGGAC	2 cut(s)	528, 1054
BsnI	GGCC	1 cut(s)	1072
Bsp1286I	GDGCHC	3 cut(s)	24, 761, 1119
Bsp143I	GATC	6 cut(s)	61, 158, 439, 682, 787, 1122
Bsp1720I	GCTNAGC	1 cut(s)	99
Bsp19I	CCATGG	1 cut(s)	708
BspANI	GGCC	1 cut(s)	1072
BspCNI	CTCAG	7 cut(s)	78, 112, 263, 346, 418, 495, 584
BspHI	TCATGA	1 cut(s)	801
BspLI	GGNNCC	2 cut(s)	568, 1042
BspPI	GGATC	6 cut(s)	69, 166, 434, 677, 782, 1130
BspQI	GCTCTTC	1 cut(s)	1107
BsrI	ACTGG	3 cut(s)	954, 1073, 1124
BssECI	CCNNGG	3 cut(s)	179, 550, 708
BssMI	GATC	6 cut(s)	61, 158, 439, 682, 787, 1122
BssT1I	CCWWGG	3 cut(s)	179, 550, 708
Bst4CI	ACNGT	4 cut(s)	41, 461, 524, 535
Bst6I	CTCTTC	2 cut(s)	510, 1107
BstBAI	YACGTR	1 cut(s)	866
BstC8I	GCNNGC	1 cut(s)	491
BstDEI	CTNAG	7 cut(s)	65, 99, 250, 354, 426, 482, 571
BstDSI	CCRYGG	1 cut(s)	708
BstEII	GGTNACC	1 cut(s)	1011
BstF5I	GGATG	2 cut(s)	141, 886
BstKTI	GATC	6 cut(s)	64, 161, 442, 685, 790, 1125
BstMAI	GTCTC	2 cut(s)	253, 422
BstMBI	GATC	6 cut(s)	61, 158, 439, 682, 787, 1122
BstNSI	RCATGY	1 cut(s)	493
BstPI	GGTNACC	1 cut(s)	1011
BstSFI	CTRYAG	1 cut(s)	1157
BstSLI	GKGCMC	1 cut(s)	24
BstSNI	TACGTA	1 cut(s)	866
BstV1I	GCAGC	1 cut(s)	539
BstV2I	GAAGAC	1 cut(s)	222
BstX2I	RGATCY	4 cut(s)	61, 158, 439, 682
BstYI	RGATCY	4 cut(s)	61, 158, 439, 682
BsuRI	GGCC	1 cut(s)	1072
BtgI	CCRYGG	1 cut(s)	708
BtsCI	GGATG	2 cut(s)	141, 886
BtsI	GCAGTG	1 cut(s)	1099
BtsIMutI	CAGTG	4 cut(s)	490, 540, 1099, 1117
Cac8I	GCNNGC	1 cut(s)	491
CciI	TCATGA	1 cut(s)	801
Cfr13I	GGNCC	3 cut(s)	187, 567, 1041
Csp6I	GTAC	2 cut(s)	520, 1060
CviAII	CATG	9 cut(s)	263, 464, 490, 709, 718, 802, 991, 1019, 1063
CviQI	GTAC	2 cut(s)	520, 1060
DdeI	CTNAG	7 cut(s)	65, 99, 250, 354, 426, 482, 571
DpnI	GATC	6 cut(s)	63, 160, 441, 684, 789, 1124
DpnII	GATC	6 cut(s)	61, 158, 439, 682, 787, 1122
DraIII	CACNNNGTG	1 cut(s)	485
Eam1104I	CTCTTC	2 cut(s)	510, 1107
EarI	CTCTTC	2 cut(s)	510, 1107
Ecl136II	GAGCTC	1 cut(s)	759
Eco105I	TACGTA	1 cut(s)	866
Eco130I	CCWWGG	3 cut(s)	179, 550, 708
Eco24I	GRGCYC	1 cut(s)	761
Eco32I	GATATC	1 cut(s)	557
Eco47I	GGWCC	3 cut(s)	187, 567, 1041
Eco53kI	GAGCTC	1 cut(s)	759
Eco57I	CTGAAG	3 cut(s)	234, 528, 912
Eco91I	GGTNACC	1 cut(s)	1011
EcoICRI	GAGCTC	1 cut(s)	759
EcoO109I	RGGNCCY	1 cut(s)	567
EcoO65I	GGTNACC	1 cut(s)	1011
EcoRV	GATATC	1 cut(s)	557
EcoT14I	CCWWGG	3 cut(s)	179, 550, 708
EcoT38I	GRGCYC	1 cut(s)	761
ErhI	CCWWGG	3 cut(s)	179, 550, 708
FaeI	CATG	9 cut(s)	266, 467, 493, 712, 721, 805, 994, 1022, 1066
FaqI	GGGAC	2 cut(s)	528, 1054
FatI	CATG	9 cut(s)	262, 463, 489, 708, 717, 801, 990, 1018, 1062
Fnu4HI	GCNGC	1 cut(s)	528
FokI	GGATG	2 cut(s)	128, 873
FriOI	GRGCYC	1 cut(s)	761
Fsp4HI	GCNGC	1 cut(s)	528
FspBI	CTAG	4 cut(s)	170, 180, 407, 771
GluI	GCNGC	1 cut(s)	528
GsuI	CTGGAG	1 cut(s)	937
HaeIII	GGCC	1 cut(s)	1072
Hin1II	CATG	9 cut(s)	266, 467, 493, 712, 721, 805, 994, 1022, 1066
HinfI	GANTC	8 cut(s)	76, 209, 503, 713, 827, 883, 979, 1022
HphI	GGTGA	2 cut(s)	265, 827
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	8 cut(s)	109, 208, 214, 253, 295, 508, 826, 984
Hpy188III	TCNNGA	4 cut(s)	419, 664, 802, 890
Hpy8I	GTNNAC	1 cut(s)	22
HpyAV	CCTTC	5 cut(s)	178, 873, 887, 1002, 1031
HpyCH4III	ACNGT	4 cut(s)	41, 461, 524, 535
HpyCH4IV	ACGT	3 cut(s)	326, 697, 865
HpyCH4V	TGCA	6 cut(s)	22, 332, 493, 527, 998, 1136
HpyF3I	CTNAG	7 cut(s)	65, 99, 250, 354, 426, 482, 571
HpySE526I	ACGT	3 cut(s)	326, 697, 865
Hsp92II	CATG	9 cut(s)	266, 467, 493, 712, 721, 805, 994, 1022, 1066
Kzo9I	GATC	6 cut(s)	61, 158, 439, 682, 787, 1122
LguI	GCTCTTC	1 cut(s)	1107
LmnI	GCTCC	2 cut(s)	764, 1153
LpnPI	CCDG	9 cut(s)	205, 327, 597, 804, 903, 967, 1054, 1066, 1105
Lsp1109I	GCAGC	1 cut(s)	539
LweI	GCATC	4 cut(s)	112, 626, 830, 1123
MaeI	CTAG	4 cut(s)	170, 180, 407, 771
MaeII	ACGT	3 cut(s)	326, 697, 865
MaeIII	GTNAC	6 cut(s)	9, 146, 370, 649, 956, 1011
MalI	GATC	6 cut(s)	63, 160, 441, 684, 789, 1124
MboI	GATC	6 cut(s)	61, 158, 439, 682, 787, 1122
MfeI	CAATTG	1 cut(s)	300
MflI	RGATCY	4 cut(s)	61, 158, 439, 682
MhlI	GDGCHC	3 cut(s)	24, 761, 1119
MluCI	AATT	5 cut(s)	29, 300, 578, 658, 914
MlyI	GAGTC	2 cut(s)	497, 1031
MmeI	TCCRAC	1 cut(s)	1131
MseI	TTAA	1 cut(s)	1032
MslI	CAYNNNNRTG	2 cut(s)	494, 783
MunI	CAATTG	1 cut(s)	300
NcoI	CCATGG	1 cut(s)	708
NdeII	GATC	6 cut(s)	61, 158, 439, 682, 787, 1122
NlaIII	CATG	9 cut(s)	266, 467, 493, 712, 721, 805, 994, 1022, 1066
NlaIV	GGNNCC	2 cut(s)	568, 1042
NmuCI	GTSAC	2 cut(s)	370, 649
NspI	RCATGY	1 cut(s)	493
PaeI	GCATGC	1 cut(s)	493
PagI	TCATGA	1 cut(s)	801
PciSI	GCTCTTC	1 cut(s)	1107
PfeI	GAWTC	6 cut(s)	76, 209, 713, 827, 883, 979
PkrI	GCNGC	1 cut(s)	529
PleI	GAGTC	2 cut(s)	497, 1030
PpsI	GAGTC	2 cut(s)	497, 1030
Ppu21I	YACGTR	1 cut(s)	866
PpuMI	RGGWCCY	1 cut(s)	567
Psp124BI	GAGCTC	1 cut(s)	761
Psp1406I	AACGTT	1 cut(s)	326
Psp5II	RGGWCCY	1 cut(s)	567
PspEI	GGTNACC	1 cut(s)	1011
PspN4I	GGNNCC	2 cut(s)	568, 1042
PspPI	GGNCC	3 cut(s)	187, 567, 1041
PspPPI	RGGWCCY	1 cut(s)	567
PsuI	RGATCY	4 cut(s)	61, 158, 439, 682
RsaI	GTAC	2 cut(s)	521, 1061
RsaNI	GTAC	2 cut(s)	520, 1060
RseI	CAYNNNNRTG	2 cut(s)	494, 783
SacI	GAGCTC	1 cut(s)	761
SapI	GCTCTTC	1 cut(s)	1107
SaqAI	TTAA	1 cut(s)	1032
SatI	GCNGC	1 cut(s)	528
Sau3AI	GATC	6 cut(s)	61, 158, 439, 682, 787, 1122
Sau96I	GGNCC	3 cut(s)	187, 567, 1041
ScaI	AGTACT	1 cut(s)	521
SchI	GAGTC	2 cut(s)	497, 1031
SduI	GDGCHC	3 cut(s)	24, 761, 1119
SfaNI	GCATC	4 cut(s)	112, 626, 830, 1123
SfcI	CTRYAG	1 cut(s)	1157
SinI	GGWCC	3 cut(s)	187, 567, 1041
SmiMI	CAYNNNNRTG	2 cut(s)	494, 783
SmlI	CTYRAG	2 cut(s)	56, 419
SmoI	CTYRAG	2 cut(s)	56, 419
SnaBI	TACGTA	1 cut(s)	866
SpeI	ACTAGT	1 cut(s)	770
SphI	GCATGC	1 cut(s)	493
Sse9I	AATT	5 cut(s)	29, 300, 578, 658, 914
SspMI	CTAG	4 cut(s)	170, 180, 407, 771
SstI	GAGCTC	1 cut(s)	761
StyI	CCWWGG	3 cut(s)	179, 550, 708
TaaI	ACNGT	4 cut(s)	41, 461, 524, 535
TaiI	ACGT	3 cut(s)	329, 700, 868
TaqI	TCGA	1 cut(s)	663
TasI	AATT	5 cut(s)	29, 300, 578, 658, 914
TatI	WGTACW	2 cut(s)	519, 1059
TfiI	GAWTC	6 cut(s)	76, 209, 713, 827, 883, 979
Tru1I	TTAA	1 cut(s)	1032
Tru9I	TTAA	1 cut(s)	1032
TscAI	CASTG	4 cut(s)	490, 540, 1099, 1124
TseFI	GTSAC	2 cut(s)	370, 649
TseI	GCWGC	1 cut(s)	527
Tsp45I	GTSAC	2 cut(s)	370, 649
TspDTI	ATGAA	8 cut(s)	17, 251, 324, 528, 734, 818, 875, 1125
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	4 cut(s)	490, 540, 1099, 1124
VneI	GTGCAC	1 cut(s)	20
VpaK11BI	GGWCC	3 cut(s)	187, 567, 1041
XapI	RAATTY	3 cut(s)	29, 658, 914
XceI	RCATGY	1 cut(s)	493
XmaJI	CCTAGG	1 cut(s)	179
XspI	CTAG	4 cut(s)	170, 180, 407, 771
ZrmI	AGTACT	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.