Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012106.1

Orthogroup ID

OG0002629

Physical Location & Seq

Genomic Coordinates Forward (+)

10193 .. 11979

Gene Structure 1787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012106.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

atgaagtcattcacctctaggaatccttgtatctgcctttcagctcagccatcagatgatgaccaagatgcctatacaaagccaaccatccgttacagatatggatctacattcctagagccacctaggaaggaccaaaagaaatctttttctgaatctgaagacaggagagaagaagaaacatctgctattgtctcagagctgtttcatggctttctcaccattggaactcttggctcggaaacaagtgccaatgaaccagcaacaccaacgtttgcaacacctttggagaacctaactgagagaaaaacagaggtcacagaaaatgacttgaagctcatcaactatgagctagagaggtttcttgaggctgagacaagggaagatccatcatcagcgaggaacagtcatgttagcagtattacactcagtggcatgcaaatggaggactctgaagatgaagagtactgtgcagcaacagtggtatgtcccctccaaggatatctgcttgggtcctcagttgaattgccagaaatgagaacagaagcaaagaaagaaaaggcatcactacaagagctgtttgataggacaaaagtgactgaaaatttcaagagaagtgaggagaaagatcccaagcaaaaacgtaaatctgccatggattccatgaagaagataataaaaaaactctatgcttcttccaagagctccacttctactagtggtcattcaaatgatcctgtttccatcatgaagaaacttggtgaggcatctgattctgtttcaaccaagaagaaaccccataaggtattacgtatgtttcaaagaaggattcatcctgaaggctctattgctgaaaaagaatttatcaagtccaagaaatacaaggacaagagcaactccagtaacattggtggttgtaataggaatctgatactcatgggtgcagagaacagaaggttaccccatgagtcagagtttaaggaagggaccaaacaaagtaacaagtacatggactggcctcaatacaggctgaatggcagtgatttgagaagaaatgaagagcactggatcaaaacagatgcagactgtaagtatcttttctattccatacaatggcaacatacttggtttagttcctaccagtacaaaacacctaacaacaaacagaaaacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009959 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

391

Amino Acids

44.96

Weight (kDa)

8.49

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14090 AT5G14090
fragaria_vesca	FvH4_4g23460 FvH4_6g53810
malus_domestica	MD09G1008500.v1.1 MD13G1122400.v1.1 MD16G1122900.v1.1 MD17G1002300.v1.1
prunus_persica	Prupe.1G222800_v2.0.a1 Prupe.1G222800_v2.0.a1 Prupe.3G308500_v2.0.a1 Prupe.3G308500_v2.0.a1
pyrus_communis	pycom111g00680 pycom16g10510
rosa_chinensis	RchiOBHm_Chr4g0429831
rosa_laevigata	RLG00000007040 RLG00000022367
rosa_multiflora	Rmu_co8344809.1_g000001 Rmu_sc0006762.1_g000005 Rmu_sc0012106.1_g000002 Rmu_sc0018638.1_g000001 Rmu_sc0018801.1_g000006 Rmu_sc0037594.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076940 Rroxscaffold_5G00371590
rosa_rugosa	Rorug02G0588700 Rorug02G0588800 Rorug04G0238500 Rorug04G0238500 Rorug04G0238500
rosa_samantha	Rh2AG668000 Rh2BG679500 Rh2CG642300 Rh2DG693000 Rh4AG294700 Rh4BG301100 Rh4CG316300 Rh4DG298000
rosa_wichuraiana	Rw2G054760 Rw4G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1113
AclI	AACGTT	1 cut(s)	272
AclWI	GGATC	5 cut(s)	112, 380, 623, 728, 1076
AcsI	RAATTY	2 cut(s)	604, 860
AcuI	CTGAAG	3 cut(s)	180, 474, 858
AdeI	CACNNNGTG	1 cut(s)	431
AfaI	GTAC	3 cut(s)	467, 1007, 1145
AfiI	CCNNNNNNNGG	2 cut(s)	497, 1113
AgsI	TTSAA	6 cut(s)	334, 524, 610, 729, 783, 821
AhlI	ACTAGT	1 cut(s)	716
AluBI	AGCT	6 cut(s)	44, 202, 337, 352, 577, 705
AluI	AGCT	6 cut(s)	44, 202, 337, 352, 577, 705
Alw21I	GWGCWC	2 cut(s)	707, 1065
Alw26I	GTCTC	2 cut(s)	199, 368
AlwI	GGATC	5 cut(s)	112, 380, 623, 728, 1076
AoxI	GGCC	1 cut(s)	1016
ApeKI	GCWGC	1 cut(s)	473
ApoI	RAATTY	2 cut(s)	604, 860
Asp700I	GAANNNNTTC	1 cut(s)	8
AspA2I	CCTAGG	1 cut(s)	125
AspS9I	GGNCC	3 cut(s)	133, 513, 987
AsuHPI	GGTGA	3 cut(s)	4, 211, 773
AvaII	GGWCC	3 cut(s)	133, 513, 987
AvrII	CCTAGG	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	707
BbsI	GAAGAC	1 cut(s)	168
Bbv12I	GWGCWC	2 cut(s)	707, 1065
BbvI	GCAGC	1 cut(s)	485
BccI	CCATC	4 cut(s)	58, 95, 397, 752
BcoDI	GTCTC	2 cut(s)	199, 368
BcuI	ACTAGT	1 cut(s)	716
BfaI	CTAG	5 cut(s)	18, 116, 126, 353, 717
BisI	GCNGC	1 cut(s)	474
BlnI	CCTAGG	1 cut(s)	125
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	475
BmcAI	AGTACT	1 cut(s)	467
Bme18I	GGWCC	3 cut(s)	133, 513, 987
BmgT120I	GGNCC	3 cut(s)	133, 513, 987
BmiI	GGNNCC	2 cut(s)	514, 988
BmsI	GCATC	4 cut(s)	58, 572, 776, 1069
BpiI	GAAGAC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	883
Bpu1102I	GCTNAGC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	386
BsaAI	YACGTR	1 cut(s)	812
BsaBI	GATNNNNATC	1 cut(s)	103
BsaJI	CCNNGG	3 cut(s)	125, 496, 654
Bsc4I	CCNNNNNNNGG	2 cut(s)	497, 1113
Bse1I	ACTGG	4 cut(s)	900, 1019, 1070, 1141
Bse8I	GATNNNNATC	1 cut(s)	103
BseDI	CCNNGG	3 cut(s)	125, 496, 654
BseGI	GGATG	2 cut(s)	87, 832
BseJI	GATNNNNATC	1 cut(s)	103
BseLI	CCNNNNNNNGG	2 cut(s)	497, 1113
BseMII	CTCAG	6 cut(s)	59, 210, 291, 363, 442, 531
BseNI	ACTGG	4 cut(s)	900, 1019, 1070, 1141
BseRI	GAGGAG	1 cut(s)	635
BseXI	GCAGC	1 cut(s)	485
BsgI	GTGCAG	2 cut(s)	492, 963
BshFI	GGCC	1 cut(s)	1018
BsiHKAI	GWGCWC	2 cut(s)	707, 1065
BslFI	GGGAC	2 cut(s)	474, 1000
BslI	CCNNNNNNNGG	2 cut(s)	497, 1113
BsmAI	GTCTC	2 cut(s)	199, 368
BsmFI	GGGAC	2 cut(s)	474, 1000
BsnI	GGCC	1 cut(s)	1018
Bsp1286I	GDGCHC	2 cut(s)	707, 1065
Bsp143I	GATC	5 cut(s)	104, 385, 628, 733, 1068
Bsp1720I	GCTNAGC	1 cut(s)	45
Bsp19I	CCATGG	1 cut(s)	654
BspANI	GGCC	1 cut(s)	1018
BspCNI	CTCAG	6 cut(s)	58, 209, 292, 364, 441, 530
BspHI	TCATGA	1 cut(s)	747
BspLI	GGNNCC	2 cut(s)	514, 988
BspPI	GGATC	5 cut(s)	112, 380, 623, 728, 1076
BspQI	GCTCTTC	1 cut(s)	1053
BsrI	ACTGG	4 cut(s)	900, 1019, 1070, 1141
BssECI	CCNNGG	3 cut(s)	125, 496, 654
BssMI	GATC	5 cut(s)	104, 385, 628, 733, 1068
BssT1I	CCWWGG	3 cut(s)	125, 496, 654
Bst4CI	ACNGT	4 cut(s)	407, 470, 481, 1088
Bst6I	CTCTTC	2 cut(s)	456, 1053
BstBAI	YACGTR	1 cut(s)	812
BstC8I	GCNNGC	1 cut(s)	437
BstDEI	CTNAG	6 cut(s)	45, 196, 300, 372, 428, 517
BstDSI	CCRYGG	1 cut(s)	654
BstEII	GGTNACC	1 cut(s)	957
BstF5I	GGATG	2 cut(s)	87, 832
BstKTI	GATC	5 cut(s)	107, 388, 631, 736, 1071
BstMAI	GTCTC	2 cut(s)	199, 368
BstMBI	GATC	5 cut(s)	104, 385, 628, 733, 1068
BstNSI	RCATGY	1 cut(s)	439
BstPI	GGTNACC	1 cut(s)	957
BstSNI	TACGTA	1 cut(s)	812
BstV1I	GCAGC	1 cut(s)	485
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	3 cut(s)	104, 385, 628
BstYI	RGATCY	3 cut(s)	104, 385, 628
BsuRI	GGCC	1 cut(s)	1018
BtgI	CCRYGG	1 cut(s)	654
BtsCI	GGATG	2 cut(s)	87, 832
BtsI	GCAGTG	1 cut(s)	1045
BtsIMutI	CAGTG	4 cut(s)	436, 486, 1045, 1063
Cac8I	GCNNGC	1 cut(s)	437
CciI	TCATGA	1 cut(s)	747
Cfr13I	GGNCC	3 cut(s)	133, 513, 987
Csp6I	GTAC	3 cut(s)	466, 1006, 1144
CviAII	CATG	9 cut(s)	209, 410, 436, 655, 664, 748, 937, 965, 1009
CviQI	GTAC	3 cut(s)	466, 1006, 1144
DdeI	CTNAG	6 cut(s)	45, 196, 300, 372, 428, 517
DpnI	GATC	5 cut(s)	106, 387, 630, 735, 1070
DpnII	GATC	5 cut(s)	104, 385, 628, 733, 1068
DraIII	CACNNNGTG	1 cut(s)	431
Eam1104I	CTCTTC	2 cut(s)	456, 1053
EarI	CTCTTC	2 cut(s)	456, 1053
Ecl136II	GAGCTC	1 cut(s)	705
Eco105I	TACGTA	1 cut(s)	812
Eco130I	CCWWGG	3 cut(s)	125, 496, 654
Eco24I	GRGCYC	1 cut(s)	707
Eco32I	GATATC	1 cut(s)	503
Eco47I	GGWCC	3 cut(s)	133, 513, 987
Eco53kI	GAGCTC	1 cut(s)	705
Eco57I	CTGAAG	3 cut(s)	180, 474, 858
Eco91I	GGTNACC	1 cut(s)	957
EcoICRI	GAGCTC	1 cut(s)	705
EcoO109I	RGGNCCY	1 cut(s)	513
EcoO65I	GGTNACC	1 cut(s)	957
EcoRV	GATATC	1 cut(s)	503
EcoT14I	CCWWGG	3 cut(s)	125, 496, 654
EcoT38I	GRGCYC	1 cut(s)	707
ErhI	CCWWGG	3 cut(s)	125, 496, 654
FaeI	CATG	9 cut(s)	212, 413, 439, 658, 667, 751, 940, 968, 1012
FaqI	GGGAC	2 cut(s)	474, 1000
FatI	CATG	9 cut(s)	208, 409, 435, 654, 663, 747, 936, 964, 1008
Fnu4HI	GCNGC	1 cut(s)	474
FokI	GGATG	2 cut(s)	74, 819
FriOI	GRGCYC	1 cut(s)	707
Fsp4HI	GCNGC	1 cut(s)	474
FspBI	CTAG	5 cut(s)	18, 116, 126, 353, 717
GluI	GCNGC	1 cut(s)	474
GsuI	CTGGAG	1 cut(s)	883
HaeIII	GGCC	1 cut(s)	1018
Hin1II	CATG	9 cut(s)	212, 413, 439, 658, 667, 751, 940, 968, 1012
HinfI	GANTC	8 cut(s)	22, 155, 449, 659, 773, 829, 925, 968
HphI	GGTGA	3 cut(s)	4, 211, 773
Hpy188I	TCNGA	9 cut(s)	55, 154, 160, 199, 241, 454, 772, 930, 973
Hpy188III	TCNNGA	4 cut(s)	365, 610, 748, 836
HpyAV	CCTTC	5 cut(s)	124, 819, 833, 948, 977
HpyCH4III	ACNGT	4 cut(s)	407, 470, 481, 1088
HpyCH4IV	ACGT	3 cut(s)	272, 643, 811
HpyCH4V	TGCA	5 cut(s)	278, 439, 473, 944, 1082
HpyF3I	CTNAG	6 cut(s)	45, 196, 300, 372, 428, 517
HpySE526I	ACGT	3 cut(s)	272, 643, 811
Hsp92II	CATG	9 cut(s)	212, 413, 439, 658, 667, 751, 940, 968, 1012
Kzo9I	GATC	5 cut(s)	104, 385, 628, 733, 1068
LguI	GCTCTTC	1 cut(s)	1053
LmnI	GCTCC	1 cut(s)	710
Lsp1109I	GCAGC	1 cut(s)	485
LweI	GCATC	4 cut(s)	58, 572, 776, 1069
MaeI	CTAG	5 cut(s)	18, 116, 126, 353, 717
MaeII	ACGT	3 cut(s)	272, 643, 811
MaeIII	GTNAC	6 cut(s)	92, 316, 595, 902, 957, 998
MalI	GATC	5 cut(s)	106, 387, 630, 735, 1070
MboI	GATC	5 cut(s)	104, 385, 628, 733, 1068
MflI	RGATCY	3 cut(s)	104, 385, 628
MhlI	GDGCHC	2 cut(s)	707, 1065
MluCI	AATT	3 cut(s)	524, 604, 860
MlyI	GAGTC	2 cut(s)	443, 977
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	1 cut(s)	978
MslI	CAYNNNNRTG	2 cut(s)	440, 729
NcoI	CCATGG	1 cut(s)	654
NdeII	GATC	5 cut(s)	104, 385, 628, 733, 1068
NlaIII	CATG	9 cut(s)	212, 413, 439, 658, 667, 751, 940, 968, 1012
NlaIV	GGNNCC	2 cut(s)	514, 988
NmuCI	GTSAC	2 cut(s)	316, 595
NspI	RCATGY	1 cut(s)	439
PaeI	GCATGC	1 cut(s)	439
PagI	TCATGA	1 cut(s)	747
PciSI	GCTCTTC	1 cut(s)	1053
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	6 cut(s)	22, 155, 659, 773, 829, 925
PflMI	CCANNNNNTGG	1 cut(s)	1113
PkrI	GCNGC	1 cut(s)	475
PleI	GAGTC	2 cut(s)	443, 976
PpsI	GAGTC	2 cut(s)	443, 976
Ppu21I	YACGTR	1 cut(s)	812
PpuMI	RGGWCCY	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	707
Psp1406I	AACGTT	1 cut(s)	272
Psp5II	RGGWCCY	1 cut(s)	513
PspEI	GGTNACC	1 cut(s)	957
PspN4I	GGNNCC	2 cut(s)	514, 988
PspPI	GGNCC	3 cut(s)	133, 513, 987
PspPPI	RGGWCCY	1 cut(s)	513
PsuI	RGATCY	3 cut(s)	104, 385, 628
RsaI	GTAC	3 cut(s)	467, 1007, 1145
RsaNI	GTAC	3 cut(s)	466, 1006, 1144
RseI	CAYNNNNRTG	2 cut(s)	440, 729
SacI	GAGCTC	1 cut(s)	707
SapI	GCTCTTC	1 cut(s)	1053
SaqAI	TTAA	1 cut(s)	978
SatI	GCNGC	1 cut(s)	474
Sau3AI	GATC	5 cut(s)	104, 385, 628, 733, 1068
Sau96I	GGNCC	3 cut(s)	133, 513, 987
ScaI	AGTACT	1 cut(s)	467
SchI	GAGTC	2 cut(s)	443, 977
SduI	GDGCHC	2 cut(s)	707, 1065
SfaNI	GCATC	4 cut(s)	58, 572, 776, 1069
SinI	GGWCC	3 cut(s)	133, 513, 987
SmiMI	CAYNNNNRTG	2 cut(s)	440, 729
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
SnaBI	TACGTA	1 cut(s)	812
SpeI	ACTAGT	1 cut(s)	716
SphI	GCATGC	1 cut(s)	439
Sse9I	AATT	3 cut(s)	524, 604, 860
SspMI	CTAG	5 cut(s)	18, 116, 126, 353, 717
SstI	GAGCTC	1 cut(s)	707
StyI	CCWWGG	3 cut(s)	125, 496, 654
TaaI	ACNGT	4 cut(s)	407, 470, 481, 1088
TaiI	ACGT	3 cut(s)	275, 646, 814
TasI	AATT	3 cut(s)	524, 604, 860
TatI	WGTACW	3 cut(s)	465, 1005, 1143
TfiI	GAWTC	6 cut(s)	22, 155, 659, 773, 829, 925
Tru1I	TTAA	1 cut(s)	978
Tru9I	TTAA	1 cut(s)	978
TscAI	CASTG	4 cut(s)	436, 486, 1045, 1070
TseFI	GTSAC	2 cut(s)	316, 595
TseI	GCWGC	1 cut(s)	473
Tsp45I	GTSAC	2 cut(s)	316, 595
TspDTI	ATGAA	8 cut(s)	17, 197, 270, 474, 680, 764, 821, 1071
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	4 cut(s)	436, 486, 1045, 1070
Van91I	CCANNNNNTGG	1 cut(s)	1113
VpaK11BI	GGWCC	3 cut(s)	133, 513, 987
XapI	RAATTY	2 cut(s)	604, 860
XceI	RCATGY	1 cut(s)	439
XmaJI	CCTAGG	1 cut(s)	125
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	5 cut(s)	18, 116, 126, 353, 717
ZrmI	AGTACT	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.