Rroxscaffold_5G00371590

regulation of auxin polar transport

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
53170778 .. 53173322
2545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00371590.1

Sequence Viewer

Length: 1215 bp
ATGAAGTTACTGGGATGGATGCATCGAAAGTTTCGTCAGAATAGTAATGAACCTGTTTTCCTCATTGGCCAGCCATCACTCGATGATCAACAATACTATCCAAAGGCAAACTATGGCACTAAACCCTTTAAGCAAGGCCAGAGAGACCATCAGCTTCGAAATTCTTTTGCTGGTCTAGAATCAGCTAAGGTAGATCAAGAAGATTACTATGAAGAGGAATCCTCTGCTGCGGCATCTGAGCTCTTCCATGGCTTTCTTGCAATTGGTACCTTTGGCTCAGACCAAGTCATCAGCGAGCCATCAACACCAACACTGCCAATGTCTGTCGAGAATATAACTGAAAAAGAGACGGAGGCCACAGAGAATGAATTGAAGCTCATAAATGATGAGTTGGAGAAGGTGCTGGTAGCTGAAGCTAAGGATGAAATTTGCAATGATTCATCTGGAAGGAACAGCCATGTTAGCAACGGAAGAAGTAGTCATGGTAGCACCATTACACTGAGTGGGAAGATGCTAGAAGTCCCAGAGAGCAATGGGATTAATGGAACTACAGTCTGCCCACTCCAGGGATATCTTTTCGGGTCAGCATATGAGTTGTCAGAAACAACAACAGTAGCGAAGAAGGAGCAGAGGACATCTCTTGGTGAGCTGTTTCAGAAGAGTAAATTGACCGAAGAGAATTATTCTGGAGCAAAACTCAGCAAGGAGGAGAAGCGAGCAGATCAGAAGGAAGCTGATAAGTCTTCCATTCATTTGATGAAAAAGAAGCTCATGAAAAAAGTGCTTCACATGAATGCTTCTTCTCGGAGCTCTGCAGCAGCTGCTGATACTGGCTCAGCAGAAACAAAACTGAATAAGGTTAATAACATTTTAGTGCTCCTTGACATGGACACTAATAGACAATCCTTCAGATGTTCCACAGAAAAGTTCACCCAGAAAACTCGAATGCTGGGGAAAAAATCTGGCAAGTACCACAAGGGCGAAAAGAAAAAGAGAATGAGCACTGATGGGATTTGCAACCATGGAGATCAGGTCCTCCCAGATGATCAAGACATCATGTTATATCCTGAACAAGTCTTTTCATCAAAACAGAGCATGCGACGCTACAAGAGCCAATCCAACCCGCCCCAGTTTGCACTTGGCGGGCTTGATTCAAATGGGAACAAGGAGCACTGGATCAAAACTGATGCAGACTACCTAGTCCTGGAGCTGTGA
Functional Annotation

Protein Analysis

404

Amino Acids

45.19

Weight (kDa)

6.58

Isoelectric Point (pI)

44.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1199
Acc65I GGTACC 1 cut(s) 266
AccB1I GGYRCC 1 cut(s) 266
AciI CCGC 3 cut(s) 230, 1124, 1143
AclWI GGATC 1 cut(s) 1184
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 2 cut(s) 160, 426
AcuI CTGAAG 2 cut(s) 432, 892
AdeI CACNNNGTG 1 cut(s) 503
AfaI GTAC 2 cut(s) 268, 971
AfiI CCNNNNNNNGG 4 cut(s) 565, 566, 886, 1204
AgsI TTSAA 2 cut(s) 373, 1155
AjnI CCWGG 2 cut(s) 564, 1203
AloI GAACNNNNNNTCC 2 cut(s) 42, 74
Alw21I GWGCWC 5 cut(s) 243, 812, 879, 1004, 1173
Alw26I GTCTC 2 cut(s) 138, 341
AlwI GGATC 1 cut(s) 1184
AlwNI CAGNNNCTG 2 cut(s) 821, 824
AoxI GGCC 3 cut(s) 67, 136, 354
ApeKI GCWGC 4 cut(s) 227, 815, 818, 821
ApoI RAATTY 2 cut(s) 160, 426
ArsI GACNNNNNNTTYG 2 cut(s) 19, 51
AseI ATTAAT 1 cut(s) 540
Asp718I GGTACC 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 1033
AsuHPI GGTGA 2 cut(s) 656, 922
AsuII TTCGAA 1 cut(s) 157
AvaII GGWCC 1 cut(s) 1033
BalI TGGCCA 1 cut(s) 69
BanI GGYRCC 1 cut(s) 266
BanII GRGCYC 2 cut(s) 243, 812
BbsI GAAGAC 1 cut(s) 735
Bbv12I GWGCWC 5 cut(s) 243, 812, 879, 1004, 1173
BbvI GCAGC 4 cut(s) 214, 808, 827, 830
BccI CCATC 5 cut(s) 9, 82, 156, 307, 1001
BciT130I CCWGG 2 cut(s) 566, 1205
BclI TGATCA 2 cut(s) 85, 1045
BcoDI GTCTC 2 cut(s) 138, 341
BfaI CTAG 3 cut(s) 176, 515, 1199
BfmI CTRYAG 2 cut(s) 549, 813
BisI GCNGC 5 cut(s) 228, 231, 816, 819, 822
BlpI GCTNAGC 1 cut(s) 835
BlsI GCNGC 5 cut(s) 229, 232, 817, 820, 823
Bme1390I CCNGG 2 cut(s) 566, 1205
Bme18I GGWCC 1 cut(s) 1033
BmgT120I GGNCC 1 cut(s) 1033
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 2 cut(s) 566, 1205
BmrI ACTGGG 2 cut(s) 20, 1123
BmsI GCATC 5 cut(s) 9, 31, 242, 501, 1177
BmuI ACTGGG 2 cut(s) 20, 1123
BpiI GAAGAC 1 cut(s) 735
BplI GAGNNNNNCTC 6 cut(s) 206, 238, 622, 654, 681, 713
BpmI CTGGAG 2 cut(s) 548, 708
Bpu10I CCTNAGC 2 cut(s) 186, 417
Bpu1102I GCTNAGC 1 cut(s) 835
Bpu14I TTCGAA 1 cut(s) 157
BsaI GGTCTC 1 cut(s) 138
BsaJI CCNNGG 3 cut(s) 247, 565, 1021
BsaXI ACNNNNNCTCC 2 cut(s) 1017, 1047
Bsc4I CCNNNNNNNGG 4 cut(s) 565, 566, 886, 1204
Bse1I ACTGG 4 cut(s) 15, 835, 1129, 1178
Bse3DI GCAATG 2 cut(s) 439, 538
BseBI CCWGG 2 cut(s) 566, 1205
BseDI CCNNGG 3 cut(s) 247, 565, 1021
BseGI GGATG 3 cut(s) 20, 24, 427
BseLI CCNNNNNNNGG 4 cut(s) 565, 566, 886, 1204
BseMI GCAATG 2 cut(s) 439, 538
BseMII CTCAG 5 cut(s) 228, 291, 491, 712, 849
BseNI ACTGG 4 cut(s) 15, 835, 1129, 1178
BseRI GAGGAG 1 cut(s) 722
BseXI GCAGC 4 cut(s) 214, 808, 827, 830
BseYI CCCAGC 1 cut(s) 949
BshFI GGCC 3 cut(s) 69, 138, 356
BshNI GGYRCC 1 cut(s) 266
BsiHKAI GWGCWC 5 cut(s) 243, 812, 879, 1004, 1173
BslFI GGGAC 1 cut(s) 506
BslI CCNNNNNNNGG 4 cut(s) 565, 566, 886, 1204
BsmAI GTCTC 2 cut(s) 138, 341
BsmBI CGTCTC 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 506
BsmI GAATGC 2 cut(s) 799, 951
BsnI GGCC 3 cut(s) 69, 138, 356
Bso31I GGTCTC 1 cut(s) 138
Bsp119I TTCGAA 1 cut(s) 157
Bsp1286I GDGCHC 5 cut(s) 243, 812, 879, 1004, 1173
Bsp143I GATC 6 cut(s) 85, 193, 721, 1027, 1045, 1176
Bsp1720I GCTNAGC 1 cut(s) 835
Bsp19I CCATGG 2 cut(s) 247, 1021
BspACI CCGC 3 cut(s) 230, 1124, 1143
BspANI GGCC 3 cut(s) 69, 138, 356
BspCNI CTCAG 5 cut(s) 229, 290, 492, 711, 848
BspHI TCATGA 1 cut(s) 771
BspLI GGNNCC 1 cut(s) 268
BspMAI CTGCAG 1 cut(s) 817
BspPI GGATC 1 cut(s) 1184
BspQI GCTCTTC 1 cut(s) 248
BspT104I TTCGAA 1 cut(s) 157
BspT107I GGYRCC 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 138
BsrDI GCAATG 2 cut(s) 439, 538
BsrI ACTGG 4 cut(s) 15, 835, 1129, 1178
BssECI CCNNGG 3 cut(s) 247, 565, 1021
BssMI GATC 6 cut(s) 85, 193, 721, 1027, 1045, 1176
BssT1I CCWWGG 2 cut(s) 247, 1021
Bst2UI CCWGG 2 cut(s) 566, 1205
Bst4CI ACNGT 2 cut(s) 553, 613
Bst6I CTCTTC 4 cut(s) 207, 248, 653, 669
BstAPI GCANNNNNTGC 1 cut(s) 821
BstBI TTCGAA 1 cut(s) 157
BstC8I GCNNGC 5 cut(s) 71, 296, 717, 1097, 1145
BstDEI CTNAG 7 cut(s) 186, 237, 277, 417, 500, 698, 835
BstDSI CCRYGG 2 cut(s) 247, 1021
BstF5I GGATG 3 cut(s) 20, 24, 427
BstKTI GATC 6 cut(s) 88, 196, 724, 1030, 1048, 1179
BstMAI GTCTC 2 cut(s) 138, 341
BstMBI GATC 6 cut(s) 85, 193, 721, 1027, 1045, 1176
BstMWI GCNNNNNNNGC 4 cut(s) 462, 821, 1101, 1110
BstNI CCWGG 2 cut(s) 566, 1205
BstNSI RCATGY 1 cut(s) 1099
BstSCI CCNGG 2 cut(s) 564, 1203
BstSFI CTRYAG 2 cut(s) 549, 813
BstV1I GCAGC 4 cut(s) 214, 808, 827, 830
BstV2I GAAGAC 1 cut(s) 735
BsuRI GGCC 3 cut(s) 69, 138, 356
BtgI CCRYGG 2 cut(s) 247, 1021
BtsCI GGATG 3 cut(s) 20, 24, 427
BtsI GCAGTG 1 cut(s) 311
BtsIMutI CAGTG 4 cut(s) 311, 497, 1002, 1171
Cac8I GCNNGC 5 cut(s) 71, 296, 717, 1097, 1145
CaiI CAGNNNCTG 2 cut(s) 821, 824
CciI TCATGA 1 cut(s) 771
Cfr13I GGNCC 1 cut(s) 1033
CseI GACGC 1 cut(s) 1110
Csp6I GTAC 2 cut(s) 267, 970
CviAII CATG 9 cut(s) 248, 458, 482, 772, 790, 886, 1022, 1057, 1096
CviQI GTAC 2 cut(s) 267, 970
DdeI CTNAG 7 cut(s) 186, 237, 277, 417, 500, 698, 835
DpnI GATC 6 cut(s) 87, 195, 723, 1029, 1047, 1178
DpnII GATC 6 cut(s) 85, 193, 721, 1027, 1045, 1176
DraIII CACNNNGTG 1 cut(s) 503
DrdI GACNNNNNNGTC 1 cut(s) 1199
DseDI GACNNNNNNGTC 1 cut(s) 1199
EaeI YGGCCR 1 cut(s) 67
Eam1104I CTCTTC 4 cut(s) 207, 248, 653, 669
EarI CTCTTC 4 cut(s) 207, 248, 653, 669
Ecl136II GAGCTC 2 cut(s) 241, 810
Eco130I CCWWGG 2 cut(s) 247, 1021
Eco24I GRGCYC 2 cut(s) 243, 812
Eco31I GGTCTC 1 cut(s) 138
Eco32I GATATC 1 cut(s) 572
Eco47I GGWCC 1 cut(s) 1033
Eco53kI GAGCTC 2 cut(s) 241, 810
Eco57I CTGAAG 2 cut(s) 432, 892
EcoICRI GAGCTC 2 cut(s) 241, 810
EcoO109I RGGNCCY 1 cut(s) 1033
EcoRII CCWGG 2 cut(s) 564, 1203
EcoRV GATATC 1 cut(s) 572
EcoT14I CCWWGG 2 cut(s) 247, 1021
EcoT22I ATGCAT 1 cut(s) 24
EcoT38I GRGCYC 2 cut(s) 243, 812
ErhI CCWWGG 2 cut(s) 247, 1021
Esp3I CGTCTC 1 cut(s) 341
FaeI CATG 9 cut(s) 251, 461, 485, 775, 793, 889, 1025, 1060, 1099
FaqI GGGAC 1 cut(s) 506
FatI CATG 9 cut(s) 247, 457, 481, 771, 789, 885, 1021, 1056, 1095
FauI CCCGC 2 cut(s) 1131, 1136
FauNDI CATATG 1 cut(s) 589
FbaI TGATCA 2 cut(s) 85, 1045
Fnu4HI GCNGC 5 cut(s) 228, 231, 816, 819, 822
FokI GGATG 3 cut(s) 27, 31, 434
FriOI GRGCYC 2 cut(s) 243, 812
Fsp4HI GCNGC 5 cut(s) 228, 231, 816, 819, 822
FspBI CTAG 3 cut(s) 176, 515, 1199
GluI GCNGC 5 cut(s) 228, 231, 816, 819, 822
GsaI CCCAGC 1 cut(s) 953
GsuI CTGGAG 2 cut(s) 548, 708
HaeIII GGCC 3 cut(s) 69, 138, 356
HgaI GACGC 1 cut(s) 1110
Hin1II CATG 9 cut(s) 251, 461, 485, 775, 793, 889, 1025, 1060, 1099
HinfI GANTC 4 cut(s) 179, 218, 437, 1151
HphI GGTGA 2 cut(s) 656, 922
Hpy166II GTNNAC 1 cut(s) 930
Hpy188I TCNGA 8 cut(s) 39, 238, 280, 601, 657, 726, 807, 911
Hpy188III TCNNGA 8 cut(s) 176, 197, 328, 444, 687, 772, 1049, 1067
Hpy8I GTNNAC 1 cut(s) 930
Hpy99I CGWCG 1 cut(s) 1104
HpyAV CCTTC 5 cut(s) 391, 441, 616, 721, 916
HpyCH4III ACNGT 2 cut(s) 553, 613
HpyCH4V TGCA 7 cut(s) 22, 260, 432, 815, 1017, 1136, 1190
HpyF10VI GCNNNNNNNGC 4 cut(s) 462, 821, 1101, 1110
HpyF3I CTNAG 7 cut(s) 186, 237, 277, 417, 500, 698, 835
Hsp92II CATG 9 cut(s) 251, 461, 485, 775, 793, 889, 1025, 1060, 1099
KpnI GGTACC 1 cut(s) 270
Ksp22I TGATCA 2 cut(s) 85, 1045
Kzo9I GATC 6 cut(s) 85, 193, 721, 1027, 1045, 1176
LguI GCTCTTC 1 cut(s) 248
LmnI GCTCC 6 cut(s) 625, 689, 807, 882, 1168, 1207
Lsp1109I GCAGC 4 cut(s) 214, 808, 827, 830
LweI GCATC 5 cut(s) 9, 31, 242, 501, 1177
MaeI CTAG 3 cut(s) 176, 515, 1199
MaeIII GTNAC 1 cut(s) 6
MalI GATC 6 cut(s) 87, 195, 723, 1029, 1047, 1178
MboI GATC 6 cut(s) 85, 193, 721, 1027, 1045, 1176
MfeI CAATTG 1 cut(s) 261
MhlI GDGCHC 5 cut(s) 243, 812, 879, 1004, 1173
MlsI TGGCCA 1 cut(s) 69
MluCI AATT 6 cut(s) 160, 261, 368, 426, 665, 679
MluNI TGGCCA 1 cut(s) 69
MmeI TCCRAC 2 cut(s) 372, 1143
MnlI CCTC 7 cut(s) 71, 208, 232, 346, 624, 700, 1046
Mox20I TGGCCA 1 cut(s) 69
Mph1103I ATGCAT 1 cut(s) 24
MscI TGGCCA 1 cut(s) 69
MseI TTAA 3 cut(s) 129, 540, 861
MslI CAYNNNNRTG 2 cut(s) 792, 872
Msp20I TGGCCA 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 821
MspR9I CCNGG 2 cut(s) 566, 1205
MunI CAATTG 1 cut(s) 261
Mva1269I GAATGC 2 cut(s) 799, 951
MvaI CCWGG 2 cut(s) 566, 1205
MwoI GCNNNNNNNGC 4 cut(s) 462, 821, 1101, 1110
NcoI CCATGG 2 cut(s) 247, 1021
NdeI CATATG 1 cut(s) 589
NdeII GATC 6 cut(s) 85, 193, 721, 1027, 1045, 1176
NlaIII CATG 9 cut(s) 251, 461, 485, 775, 793, 889, 1025, 1060, 1099
NlaIV GGNNCC 1 cut(s) 268
NsiI ATGCAT 1 cut(s) 24
NspI RCATGY 1 cut(s) 1099
NspV TTCGAA 1 cut(s) 157
PaeI GCATGC 1 cut(s) 1099
PagI TCATGA 1 cut(s) 771
PciSI GCTCTTC 1 cut(s) 248
PcsI WCGNNNNNNNCGW 1 cut(s) 31
PctI GAATGC 2 cut(s) 799, 951
PfeI GAWTC 4 cut(s) 179, 218, 437, 1151
PflFI GACNNNGTC 1 cut(s) 284
PfoI TCCNGGA 1 cut(s) 1203
PkrI GCNGC 5 cut(s) 229, 232, 817, 820, 823
PpuMI RGGWCCY 1 cut(s) 1033
PshBI ATTAAT 1 cut(s) 540
Psp124BI GAGCTC 2 cut(s) 243, 812
Psp5II RGGWCCY 1 cut(s) 1033
Psp6I CCWGG 2 cut(s) 564, 1203
PspFI CCCAGC 1 cut(s) 949
PspGI CCWGG 2 cut(s) 564, 1203
PspN4I GGNNCC 1 cut(s) 268
PspPI GGNCC 1 cut(s) 1033
PspPPI RGGWCCY 1 cut(s) 1033
PstI CTGCAG 1 cut(s) 817
PstNI CAGNNNCTG 2 cut(s) 821, 824
PsyI GACNNNGTC 1 cut(s) 284
PvuII CAGCTG 1 cut(s) 821
RsaI GTAC 2 cut(s) 268, 971
RsaNI GTAC 2 cut(s) 267, 970
RseI CAYNNNNRTG 2 cut(s) 792, 872
SacI GAGCTC 2 cut(s) 243, 812
SapI GCTCTTC 1 cut(s) 248
SaqAI TTAA 3 cut(s) 129, 540, 861
SatI GCNGC 5 cut(s) 228, 231, 816, 819, 822
Sau3AI GATC 6 cut(s) 85, 193, 721, 1027, 1045, 1176
Sau96I GGNCC 1 cut(s) 1033
ScrFI CCNGG 2 cut(s) 566, 1205
SduI GDGCHC 5 cut(s) 243, 812, 879, 1004, 1173
SfaNI GCATC 5 cut(s) 9, 31, 242, 501, 1177
SfcI CTRYAG 2 cut(s) 549, 813
SfuI TTCGAA 1 cut(s) 157
SinI GGWCC 1 cut(s) 1033
SmiMI CAYNNNNRTG 2 cut(s) 792, 872
SphI GCATGC 1 cut(s) 1099
Sse9I AATT 6 cut(s) 160, 261, 368, 426, 665, 679
SsiI CCGC 3 cut(s) 230, 1124, 1143
SspMI CTAG 3 cut(s) 176, 515, 1199
SstI GAGCTC 2 cut(s) 243, 812
StyD4I CCNGG 2 cut(s) 564, 1203
StyI CCWWGG 2 cut(s) 247, 1021
TaaI ACNGT 2 cut(s) 553, 613
TaqI TCGA 5 cut(s) 25, 81, 157, 327, 943
TaqII GACCGA 1 cut(s) 686
TasI AATT 6 cut(s) 160, 261, 368, 426, 665, 679
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 4 cut(s) 179, 218, 437, 1151
Tru1I TTAA 3 cut(s) 129, 540, 861
Tru9I TTAA 3 cut(s) 129, 540, 861
TscAI CASTG 4 cut(s) 318, 504, 1009, 1178
TseI GCWGC 4 cut(s) 227, 815, 818, 821
TspGWI ACGGA 2 cut(s) 365, 483
TspRI CASTG 4 cut(s) 318, 504, 1009, 1178
Tth111I GACNNNGTC 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 1033
VspI ATTAAT 1 cut(s) 540
XapI RAATTY 2 cut(s) 160, 426
XbaI TCTAGA 1 cut(s) 175
XceI RCATGY 1 cut(s) 1099
XcmI CCANNNNNNNNNTGG 1 cut(s) 1136
XspI CTAG 3 cut(s) 176, 515, 1199
Zsp2I ATGCAT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.