Rh4DG298000

regulation of auxin polar transport

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
51976584 .. 51980515
3932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG298000.1

Sequence Viewer

Length: 1170 bp
ATGAAGTTACTGGGATGGATGCATCGAAAGTTTCGTCAGAATAGTAATGAACCTGTTTTCCTCATTGGCCAGCCATCACTCGATGATCAACAATACTATCCAAAGGCAAACTATGGCACTAAACCCTTTAAGCAAGGCCAGAGAGACCATCAGCTTCGAAATTCTTTTGCTGGTCTAGAATCAGCTAAGGTAGATCAAGAAGATTACTATGAGGAGGAATCCTCTGCTGCGGCATCTGAGCTCTTCCATGGCTTTCTTGCAATTGGTACCTTTGGCTCAGACCAAGTCATGACGGAGCCATCAACACCAACACTGCCAATGTCTGTCGAGAATATAACTGAAAAAGAGACGGAGGCCACAGAAAATGAATTGAAGCTCATAAATGATGAGTTGGAGAAGGTGCTGGTAGCTGAAGCTAAGGATGAAATTTGCAATGATTCATCTGGAAGGAACAGCCATGTTAGCAACGGAAGAAGTAGTCATGGTAGCACCATTACACTGAGTGGGAAGATGCTAGAAGTCCCAGAGAGCAATGGGATTAATGGAACTACAGTCTGCCCACTCCAGGGATATCTTTTCGGGTCAGCATATGAGTTGTCAGAAACAACAACAGTAGCGAAGAAGGAGCAGAGGACATCTCTTGGTGAGCTGTTTCAGAAGAGTAAATTGACCGAAGAGAATTATTCTGGAGCAAAACTCAGCAAGGAGGAGAAGCGAGCAGATCAGAAGGAAGCTGATAAGTCTTCCATTCATTTGATGAAAAAGAAGCTCATGAAAAAAGTGCTTCACATGAATGCTTCTTCTCGGAGCTCTGCAGCAGCTGCTGATGCTGGCTCAGCAGAAACAAAACTGAATAAGATCCTTCAGATGTTCCACAGAAAAGTTCACCCAGAAAACTCGAATGCTGGGGAAAAATCTGGCAAGTACCAAAAGGGCGAAAAGAAAAAGAGAATGAGCACTGATGGGATTTGCAACCACCGAGATCAGGTCCTCCCAGATGATCAAGACATCATGTTATATCCTGAACAAGTCTTTTCATCAAAACAGAGCATGCGACGCTACAAGAGCCAATCTAACCCGCCCCAGTTTGCACTTGGCGGGCTTGATTCAAATGGGAACAAGGAGCACTGGATCAAAACTGATGCAGACTACCTAGTCCTGGAGCTGTGA
Functional Annotation

Protein Analysis

389

Amino Acids

43.51

Weight (kDa)

6.3

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1154
Acc65I GGTACC 1 cut(s) 266
AccB1I GGYRCC 1 cut(s) 266
AciI CCGC 3 cut(s) 230, 1079, 1098
AclWI GGATC 2 cut(s) 853, 1139
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 2 cut(s) 160, 426
AcuI CTGAAG 2 cut(s) 432, 848
AdeI CACNNNGTG 1 cut(s) 503
AfaI GTAC 2 cut(s) 268, 926
AfiI CCNNNNNNNGG 4 cut(s) 565, 566, 985, 1159
AgsI TTSAA 2 cut(s) 373, 1110
AjnI CCWGG 2 cut(s) 564, 1158
AloI GAACNNNNNNTCC 2 cut(s) 42, 74
Alw21I GWGCWC 4 cut(s) 243, 812, 959, 1128
Alw26I GTCTC 2 cut(s) 138, 341
AlwI GGATC 2 cut(s) 853, 1139
AlwNI CAGNNNCTG 2 cut(s) 821, 824
AoxI GGCC 3 cut(s) 67, 136, 354
ApeKI GCWGC 4 cut(s) 227, 815, 818, 821
ApoI RAATTY 2 cut(s) 160, 426
ArsI GACNNNNNNTTYG 2 cut(s) 19, 51
AseI ATTAAT 1 cut(s) 540
Asp718I GGTACC 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 988
AsuHPI GGTGA 2 cut(s) 656, 878
AsuII TTCGAA 1 cut(s) 157
AvaII GGWCC 1 cut(s) 988
BalI TGGCCA 1 cut(s) 69
BanI GGYRCC 1 cut(s) 266
BanII GRGCYC 2 cut(s) 243, 812
BbsI GAAGAC 1 cut(s) 735
Bbv12I GWGCWC 4 cut(s) 243, 812, 959, 1128
BbvI GCAGC 4 cut(s) 214, 808, 827, 830
BccI CCATC 5 cut(s) 9, 82, 156, 307, 956
BciT130I CCWGG 2 cut(s) 566, 1160
BclI TGATCA 2 cut(s) 85, 1000
BcoDI GTCTC 2 cut(s) 138, 341
BfaI CTAG 3 cut(s) 176, 515, 1154
BfmI CTRYAG 2 cut(s) 549, 813
BisI GCNGC 5 cut(s) 228, 231, 816, 819, 822
BlpI GCTNAGC 1 cut(s) 835
BlsI GCNGC 5 cut(s) 229, 232, 817, 820, 823
Bme1390I CCNGG 2 cut(s) 566, 1160
Bme18I GGWCC 1 cut(s) 988
BmgT120I GGNCC 1 cut(s) 988
BmiI GGNNCC 2 cut(s) 268, 297
BmrFI CCNGG 2 cut(s) 566, 1160
BmrI ACTGGG 2 cut(s) 20, 1078
BmsI GCATC 6 cut(s) 9, 31, 242, 501, 817, 1132
BmuI ACTGGG 2 cut(s) 20, 1078
BpiI GAAGAC 1 cut(s) 735
BplI GAGNNNNNCTC 6 cut(s) 206, 238, 622, 654, 681, 713
BpmI CTGGAG 2 cut(s) 548, 708
Bpu10I CCTNAGC 2 cut(s) 186, 417
Bpu1102I GCTNAGC 1 cut(s) 835
Bpu14I TTCGAA 1 cut(s) 157
BsaI GGTCTC 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 247, 565
Bsc4I CCNNNNNNNGG 4 cut(s) 565, 566, 985, 1159
Bse1I ACTGG 3 cut(s) 15, 1084, 1133
Bse3DI GCAATG 2 cut(s) 439, 538
BseBI CCWGG 2 cut(s) 566, 1160
BseDI CCNNGG 2 cut(s) 247, 565
BseGI GGATG 3 cut(s) 20, 24, 427
BseLI CCNNNNNNNGG 4 cut(s) 565, 566, 985, 1159
BseMI GCAATG 2 cut(s) 439, 538
BseMII CTCAG 5 cut(s) 228, 291, 491, 712, 849
BseNI ACTGG 3 cut(s) 15, 1084, 1133
BseRI GAGGAG 2 cut(s) 227, 722
BseXI GCAGC 4 cut(s) 214, 808, 827, 830
BseYI CCCAGC 1 cut(s) 905
BshFI GGCC 3 cut(s) 69, 138, 356
BshNI GGYRCC 1 cut(s) 266
BsiHKAI GWGCWC 4 cut(s) 243, 812, 959, 1128
BslFI GGGAC 1 cut(s) 506
BslI CCNNNNNNNGG 4 cut(s) 565, 566, 985, 1159
BsmAI GTCTC 2 cut(s) 138, 341
BsmBI CGTCTC 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 506
BsmI GAATGC 2 cut(s) 799, 907
BsnI GGCC 3 cut(s) 69, 138, 356
Bso31I GGTCTC 1 cut(s) 138
Bsp119I TTCGAA 1 cut(s) 157
Bsp1286I GDGCHC 4 cut(s) 243, 812, 959, 1128
Bsp143I GATC 7 cut(s) 85, 193, 721, 858, 982, 1000, 1131
Bsp1720I GCTNAGC 1 cut(s) 835
Bsp19I CCATGG 1 cut(s) 247
BspACI CCGC 3 cut(s) 230, 1079, 1098
BspANI GGCC 3 cut(s) 69, 138, 356
BspCNI CTCAG 5 cut(s) 229, 290, 492, 711, 848
BspHI TCATGA 2 cut(s) 288, 771
BspLI GGNNCC 2 cut(s) 268, 297
BspMAI CTGCAG 1 cut(s) 817
BspPI GGATC 2 cut(s) 853, 1139
BspQI GCTCTTC 1 cut(s) 248
BspT104I TTCGAA 1 cut(s) 157
BspT107I GGYRCC 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 138
BsrDI GCAATG 2 cut(s) 439, 538
BsrI ACTGG 3 cut(s) 15, 1084, 1133
BssECI CCNNGG 2 cut(s) 247, 565
BssMI GATC 7 cut(s) 85, 193, 721, 858, 982, 1000, 1131
BssT1I CCWWGG 1 cut(s) 247
Bst2UI CCWGG 2 cut(s) 566, 1160
Bst4CI ACNGT 2 cut(s) 553, 613
Bst6I CTCTTC 3 cut(s) 248, 653, 669
BstAPI GCANNNNNTGC 1 cut(s) 821
BstBI TTCGAA 1 cut(s) 157
BstC8I GCNNGC 5 cut(s) 71, 717, 832, 1052, 1100
BstDEI CTNAG 7 cut(s) 186, 237, 277, 417, 500, 698, 835
BstDSI CCRYGG 1 cut(s) 247
BstF5I GGATG 3 cut(s) 20, 24, 427
BstKTI GATC 7 cut(s) 88, 196, 724, 861, 985, 1003, 1134
BstMAI GTCTC 2 cut(s) 138, 341
BstMBI GATC 7 cut(s) 85, 193, 721, 858, 982, 1000, 1131
BstMWI GCNNNNNNNGC 6 cut(s) 462, 821, 827, 836, 1056, 1065
BstNI CCWGG 2 cut(s) 566, 1160
BstNSI RCATGY 1 cut(s) 1054
BstSCI CCNGG 2 cut(s) 564, 1158
BstSFI CTRYAG 2 cut(s) 549, 813
BstV1I GCAGC 4 cut(s) 214, 808, 827, 830
BstV2I GAAGAC 1 cut(s) 735
BstX2I RGATCY 1 cut(s) 858
BstYI RGATCY 1 cut(s) 858
BsuRI GGCC 3 cut(s) 69, 138, 356
BtgI CCRYGG 1 cut(s) 247
BtsCI GGATG 3 cut(s) 20, 24, 427
BtsI GCAGTG 1 cut(s) 311
BtsIMutI CAGTG 4 cut(s) 311, 497, 957, 1126
Cac8I GCNNGC 5 cut(s) 71, 717, 832, 1052, 1100
CaiI CAGNNNCTG 2 cut(s) 821, 824
CciI TCATGA 2 cut(s) 288, 771
Cfr13I GGNCC 1 cut(s) 988
CseI GACGC 1 cut(s) 1065
Csp6I GTAC 2 cut(s) 267, 925
CviAII CATG 8 cut(s) 248, 289, 458, 482, 772, 790, 1012, 1051
CviQI GTAC 2 cut(s) 267, 925
DdeI CTNAG 7 cut(s) 186, 237, 277, 417, 500, 698, 835
DpnI GATC 7 cut(s) 87, 195, 723, 860, 984, 1002, 1133
DpnII GATC 7 cut(s) 85, 193, 721, 858, 982, 1000, 1131
DraIII CACNNNGTG 1 cut(s) 503
DrdI GACNNNNNNGTC 1 cut(s) 1154
DseDI GACNNNNNNGTC 1 cut(s) 1154
EaeI YGGCCR 1 cut(s) 67
Eam1104I CTCTTC 3 cut(s) 248, 653, 669
EarI CTCTTC 3 cut(s) 248, 653, 669
Ecl136II GAGCTC 2 cut(s) 241, 810
Eco130I CCWWGG 1 cut(s) 247
Eco24I GRGCYC 2 cut(s) 243, 812
Eco31I GGTCTC 1 cut(s) 138
Eco32I GATATC 1 cut(s) 572
Eco47I GGWCC 1 cut(s) 988
Eco53kI GAGCTC 2 cut(s) 241, 810
Eco57I CTGAAG 2 cut(s) 432, 848
EcoICRI GAGCTC 2 cut(s) 241, 810
EcoO109I RGGNCCY 1 cut(s) 988
EcoRII CCWGG 2 cut(s) 564, 1158
EcoRV GATATC 1 cut(s) 572
EcoT14I CCWWGG 1 cut(s) 247
EcoT22I ATGCAT 1 cut(s) 24
EcoT38I GRGCYC 2 cut(s) 243, 812
ErhI CCWWGG 1 cut(s) 247
Esp3I CGTCTC 1 cut(s) 341
FaeI CATG 8 cut(s) 251, 292, 461, 485, 775, 793, 1015, 1054
FaqI GGGAC 1 cut(s) 506
FatI CATG 8 cut(s) 247, 288, 457, 481, 771, 789, 1011, 1050
FauI CCCGC 2 cut(s) 1086, 1091
FauNDI CATATG 1 cut(s) 589
FbaI TGATCA 2 cut(s) 85, 1000
Fnu4HI GCNGC 5 cut(s) 228, 231, 816, 819, 822
FokI GGATG 3 cut(s) 27, 31, 434
FriOI GRGCYC 2 cut(s) 243, 812
Fsp4HI GCNGC 5 cut(s) 228, 231, 816, 819, 822
FspBI CTAG 3 cut(s) 176, 515, 1154
GluI GCNGC 5 cut(s) 228, 231, 816, 819, 822
GsaI CCCAGC 1 cut(s) 909
GsuI CTGGAG 2 cut(s) 548, 708
HaeIII GGCC 3 cut(s) 69, 138, 356
HgaI GACGC 1 cut(s) 1065
Hin1II CATG 8 cut(s) 251, 292, 461, 485, 775, 793, 1015, 1054
HinfI GANTC 4 cut(s) 179, 218, 437, 1106
HphI GGTGA 2 cut(s) 656, 878
Hpy166II GTNNAC 1 cut(s) 886
Hpy188I TCNGA 8 cut(s) 39, 238, 280, 601, 657, 726, 807, 867
Hpy188III TCNNGA 9 cut(s) 176, 197, 289, 328, 444, 687, 772, 1004, 1022
Hpy8I GTNNAC 1 cut(s) 886
Hpy99I CGWCG 1 cut(s) 1059
HpyAV CCTTC 5 cut(s) 391, 441, 616, 721, 872
HpyCH4III ACNGT 2 cut(s) 553, 613
HpyCH4V TGCA 7 cut(s) 22, 260, 432, 815, 972, 1091, 1145
HpyF10VI GCNNNNNNNGC 6 cut(s) 462, 821, 827, 836, 1056, 1065
HpyF3I CTNAG 7 cut(s) 186, 237, 277, 417, 500, 698, 835
Hsp92II CATG 8 cut(s) 251, 292, 461, 485, 775, 793, 1015, 1054
KpnI GGTACC 1 cut(s) 270
Ksp22I TGATCA 2 cut(s) 85, 1000
Kzo9I GATC 7 cut(s) 85, 193, 721, 858, 982, 1000, 1131
LguI GCTCTTC 1 cut(s) 248
LmnI GCTCC 6 cut(s) 295, 625, 689, 807, 1123, 1162
Lsp1109I GCAGC 4 cut(s) 214, 808, 827, 830
LweI GCATC 6 cut(s) 9, 31, 242, 501, 817, 1132
MaeI CTAG 3 cut(s) 176, 515, 1154
MaeIII GTNAC 1 cut(s) 6
MalI GATC 7 cut(s) 87, 195, 723, 860, 984, 1002, 1133
MboI GATC 7 cut(s) 85, 193, 721, 858, 982, 1000, 1131
MboII GAAGA 9 cut(s) 212, 235, 483, 520, 631, 670, 686, 735, 792
MfeI CAATTG 1 cut(s) 261
MflI RGATCY 1 cut(s) 858
MhlI GDGCHC 4 cut(s) 243, 812, 959, 1128
MlsI TGGCCA 1 cut(s) 69
MluCI AATT 6 cut(s) 160, 261, 368, 426, 665, 679
MluNI TGGCCA 1 cut(s) 69
MmeI TCCRAC 1 cut(s) 372
MnlI CCTC 8 cut(s) 71, 205, 208, 232, 346, 624, 700, 1001
Mox20I TGGCCA 1 cut(s) 69
Mph1103I ATGCAT 1 cut(s) 24
MscI TGGCCA 1 cut(s) 69
MseI TTAA 2 cut(s) 129, 540
MslI CAYNNNNRTG 1 cut(s) 792
Msp20I TGGCCA 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 821
MspR9I CCNGG 2 cut(s) 566, 1160
MunI CAATTG 1 cut(s) 261
Mva1269I GAATGC 2 cut(s) 799, 907
MvaI CCWGG 2 cut(s) 566, 1160
MwoI GCNNNNNNNGC 6 cut(s) 462, 821, 827, 836, 1056, 1065
NcoI CCATGG 1 cut(s) 247
NdeI CATATG 1 cut(s) 589
NdeII GATC 7 cut(s) 85, 193, 721, 858, 982, 1000, 1131
NlaIII CATG 8 cut(s) 251, 292, 461, 485, 775, 793, 1015, 1054
NlaIV GGNNCC 2 cut(s) 268, 297
NsiI ATGCAT 1 cut(s) 24
NspI RCATGY 1 cut(s) 1054
NspV TTCGAA 1 cut(s) 157
PaeI GCATGC 1 cut(s) 1054
PagI TCATGA 2 cut(s) 288, 771
PciSI GCTCTTC 1 cut(s) 248
PcsI WCGNNNNNNNCGW 1 cut(s) 31
PctI GAATGC 2 cut(s) 799, 907
PfeI GAWTC 4 cut(s) 179, 218, 437, 1106
PflFI GACNNNGTC 1 cut(s) 284
PfoI TCCNGGA 1 cut(s) 1158
PkrI GCNGC 5 cut(s) 229, 232, 817, 820, 823
PpuMI RGGWCCY 1 cut(s) 988
PshBI ATTAAT 1 cut(s) 540
Psp124BI GAGCTC 2 cut(s) 243, 812
Psp5II RGGWCCY 1 cut(s) 988
Psp6I CCWGG 2 cut(s) 564, 1158
PspFI CCCAGC 1 cut(s) 905
PspGI CCWGG 2 cut(s) 564, 1158
PspN4I GGNNCC 2 cut(s) 268, 297
PspPI GGNCC 1 cut(s) 988
PspPPI RGGWCCY 1 cut(s) 988
PstI CTGCAG 1 cut(s) 817
PstNI CAGNNNCTG 2 cut(s) 821, 824
PsuI RGATCY 1 cut(s) 858
PsyI GACNNNGTC 1 cut(s) 284
PvuII CAGCTG 1 cut(s) 821
RsaI GTAC 2 cut(s) 268, 926
RsaNI GTAC 2 cut(s) 267, 925
RseI CAYNNNNRTG 1 cut(s) 792
SacI GAGCTC 2 cut(s) 243, 812
SapI GCTCTTC 1 cut(s) 248
SaqAI TTAA 2 cut(s) 129, 540
SatI GCNGC 5 cut(s) 228, 231, 816, 819, 822
Sau3AI GATC 7 cut(s) 85, 193, 721, 858, 982, 1000, 1131
Sau96I GGNCC 1 cut(s) 988
ScrFI CCNGG 2 cut(s) 566, 1160
SduI GDGCHC 4 cut(s) 243, 812, 959, 1128
SfaNI GCATC 6 cut(s) 9, 31, 242, 501, 817, 1132
SfcI CTRYAG 2 cut(s) 549, 813
SfuI TTCGAA 1 cut(s) 157
SinI GGWCC 1 cut(s) 988
SmiMI CAYNNNNRTG 1 cut(s) 792
SphI GCATGC 1 cut(s) 1054
Sse9I AATT 6 cut(s) 160, 261, 368, 426, 665, 679
SsiI CCGC 3 cut(s) 230, 1079, 1098
SspMI CTAG 3 cut(s) 176, 515, 1154
SstI GAGCTC 2 cut(s) 243, 812
StyD4I CCNGG 2 cut(s) 564, 1158
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 2 cut(s) 553, 613
TaqI TCGA 5 cut(s) 25, 81, 157, 327, 899
TaqII GACCGA 1 cut(s) 686
TasI AATT 6 cut(s) 160, 261, 368, 426, 665, 679
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 4 cut(s) 179, 218, 437, 1106
Tru1I TTAA 2 cut(s) 129, 540
Tru9I TTAA 2 cut(s) 129, 540
TscAI CASTG 4 cut(s) 318, 504, 964, 1133
TseI GCWGC 4 cut(s) 227, 815, 818, 821
TspGWI ACGGA 3 cut(s) 308, 365, 483
TspRI CASTG 4 cut(s) 318, 504, 964, 1133
Tth111I GACNNNGTC 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 988
VspI ATTAAT 1 cut(s) 540
XapI RAATTY 2 cut(s) 160, 426
XbaI TCTAGA 1 cut(s) 175
XceI RCATGY 1 cut(s) 1054
XcmI CCANNNNNNNNNTGG 1 cut(s) 1091
XspI CTAG 3 cut(s) 176, 515, 1154
Zsp2I ATGCAT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.