Prupe.1G222800_v2.0.a1

regulation of auxin polar transport

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
23680245 .. 23684837
4593 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G222800.2

Sequence Viewer

Length: 1170 bp
ATGCCAATGTTGCAGTTACTAGGTTGGATGCATCGTAAGTTTCGGCAGAATAGCAACGAGCCATTTAAAGTTTTTGTCATTGGGCAGCCATCTCTCGATGATCAACAATGCTATCCTAAGCCAAACTGTGGCACAAAGCCCTTTAAACAAACCCAGAGAGACCAGCACCTTCGGAAGTCTTTCAACGGTCTAGAGGCAGCCAGGGCAGAAGAAGAATACTATGAAGATGAATCATCTGCTGCAGCATCTGAGCTCTTCCATGGCTTCCTTGCAATTGGTACCCTTGGCTCAGAGCAAGTCATCACGGAACCATCAACTCCAACACTTGCCATCTCTGTGGAGAACATAACTGAAAAAGAGACTGAGGTCACAGAGAATGAATTGAAGCTCATCAATGATGAATTGGAGAAAGTCCTGGCAGCTGATTCAGCTAAAGATGAGATTTGCAATGATTCATCTGGAAGAAACAGCCATGTTAGCAATGGAAGAAGTAGCCATGGTAGCACCATCACACTAAGTGGCAAGACACTGGAAGGCTCAGAGAGCAATGGGATTAATGGAACCACAGTGTGCCCACTCCAGGGATATCTTTTTGGGTCAGCATATGAATTGTCAGAAACAACAACAGTGGCAAAGAAGGAACACAGGACATCTCTTGGCGAGCTGTTTCAGAGGACTAAATTGGCAGAGGAGATTTCTGGACCGAAATCGGCCAAGGAGGAGAAGCGAGCAGAGAAGGAAGCTGAAAAGTCCGCCATGCACTTGATGAAAAAGAAGCTCAAGAAAAAAATGCTTTATGCTTCTTCTCGCAGCTCTGGTGGACCTGCAGATCCTTCCTCAGCGGAAACAAAACTGAATAAGATCCTTCACATGTTCCACAGAAAAGTTCACCCTGAAACCTCATCTGCTGAGCAAAAAACTGGTAAGTACCATAAGAACGAAAACAAGAAGAAAACAAGCAATGATGGGGCTTACAACAGTGGAGATCAGGTGCTTCCAGATGAAGACATCATGCTATATCCTGAACGAGGCTTCTCCTTGAAGCAGAGCATGCGGCGCTACAAGAGTCAATCAAACCCACCGCAATTCGCGCTTAGCAGCATTGATTCAAATGAGAACAGGGAGCACTGGATCAAAACAGATGCAGACTACTTAGTCTTGGAGCTGTGA
Functional Annotation

Protein Analysis

390

Amino Acids

43.49

Weight (kDa)

6.35

Isoelectric Point (pI)

46.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1154
Acc36I ACCTGC 1 cut(s) 832
Acc65I GGTACC 1 cut(s) 278
AccB1I GGYRCC 1 cut(s) 278
AccB7I CCANNNNNTGG 1 cut(s) 128
AccII CGCG 1 cut(s) 1091
AciI CCGC 4 cut(s) 753, 842, 1054, 1082
AclWI GGATC 3 cut(s) 824, 856, 1139
AcoI YGGCCR 1 cut(s) 711
AdeI CACNNNGTG 2 cut(s) 518, 570
AfaI GTAC 2 cut(s) 280, 929
AfiI CCNNNNNNNGG 4 cut(s) 128, 580, 581, 1028
AflIII ACRYGT 1 cut(s) 870
AgsI TTSAA 4 cut(s) 184, 385, 1042, 1110
AjnI CCWGG 3 cut(s) 200, 414, 579
AluBI AGCT 9 cut(s) 253, 388, 422, 431, 664, 743, 778, 813, 1165
AluI AGCT 9 cut(s) 253, 388, 422, 431, 664, 743, 778, 813, 1165
Alw21I GWGCWC 2 cut(s) 255, 1128
Alw26I GTCTC 2 cut(s) 153, 353
AlwI GGATC 3 cut(s) 824, 856, 1139
AlwNI CAGNNNCTG 1 cut(s) 248
AoxI GGCC 1 cut(s) 711
ApeKI GCWGC 7 cut(s) 85, 197, 239, 242, 419, 810, 1098
AseI ATTAAT 1 cut(s) 555
Asp700I GAANNNNTTC 1 cut(s) 179
Asp718I GGTACC 1 cut(s) 278
AspLEI GCGC 2 cut(s) 1059, 1093
AspS9I GGNCC 2 cut(s) 701, 821
AsuHPI GGTGA 1 cut(s) 881
AvaII GGWCC 2 cut(s) 701, 821
BaeGI GKGCMC 1 cut(s) 575
BanI GGYRCC 1 cut(s) 278
BanII GRGCYC 1 cut(s) 255
BbsI GAAGAC 1 cut(s) 1011
Bbv12I GWGCWC 2 cut(s) 255, 1128
BbvCI CCTCAGC 1 cut(s) 838
BbvI GCAGC 7 cut(s) 97, 209, 226, 254, 431, 822, 1110
BccI CCATC 5 cut(s) 97, 319, 338, 515, 959
BciT130I CCWGG 3 cut(s) 202, 416, 581
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 2 cut(s) 153, 353
BfaI CTAG 2 cut(s) 20, 191
BfmI CTRYAG 2 cut(s) 240, 825
BfoI RGCGCY 1 cut(s) 1060
BfuAI ACCTGC 1 cut(s) 832
BisI GCNGC 8 cut(s) 86, 198, 240, 243, 420, 811, 1055, 1099
BlpI GCTNAGC 2 cut(s) 909, 1094
BlsI GCNGC 8 cut(s) 87, 199, 241, 244, 421, 812, 1056, 1100
Bme1390I CCNGG 3 cut(s) 202, 416, 581
Bme18I GGWCC 2 cut(s) 701, 821
BmgT120I GGNCC 2 cut(s) 701, 821
BmiI GGNNCC 3 cut(s) 280, 309, 562
BmrFI CCNGG 3 cut(s) 202, 416, 581
BmsI GCATC 4 cut(s) 18, 40, 254, 1132
BoxI GACNNNNGTC 1 cut(s) 365
BpiI GAAGAC 1 cut(s) 1011
BpmI CTGGAG 1 cut(s) 563
Bpu10I CCTNAGC 2 cut(s) 117, 838
Bpu1102I GCTNAGC 2 cut(s) 909, 1094
BpuEI CTTGAG 1 cut(s) 764
BsaI GGTCTC 1 cut(s) 153
BsaJI CCNNGG 6 cut(s) 201, 259, 283, 496, 580, 714
BsaXI ACNNNNNCTCC 2 cut(s) 975, 1005
Bsc4I CCNNNNNNNGG 4 cut(s) 128, 580, 581, 1028
Bse1I ACTGG 3 cut(s) 534, 925, 1133
Bse3DI GCAATG 4 cut(s) 454, 487, 553, 967
BseBI CCWGG 3 cut(s) 202, 416, 581
BseDI CCNNGG 6 cut(s) 201, 259, 283, 496, 580, 714
BseGI GGATG 1 cut(s) 33
BseLI CCNNNNNNNGG 4 cut(s) 128, 580, 581, 1028
BseMI GCAATG 4 cut(s) 454, 487, 553, 967
BseMII CTCAG 6 cut(s) 240, 303, 354, 552, 852, 900
BseNI ACTGG 3 cut(s) 534, 925, 1133
BseRI GAGGAG 2 cut(s) 704, 734
BseSI GKGCMC 1 cut(s) 575
BseXI GCAGC 7 cut(s) 97, 209, 226, 254, 431, 822, 1110
Bsh1236I CGCG 1 cut(s) 1091
BshFI GGCC 1 cut(s) 713
BshNI GGYRCC 1 cut(s) 278
BsiHKAI GWGCWC 2 cut(s) 255, 1128
BslI CCNNNNNNNGG 4 cut(s) 128, 580, 581, 1028
BsmAI GTCTC 2 cut(s) 153, 353
BsnI GGCC 1 cut(s) 713
Bso31I GGTCTC 1 cut(s) 153
Bsp1286I GDGCHC 3 cut(s) 255, 575, 1128
Bsp143I GATC 5 cut(s) 100, 829, 861, 985, 1131
Bsp1720I GCTNAGC 2 cut(s) 909, 1094
Bsp19I CCATGG 2 cut(s) 259, 496
BspACI CCGC 4 cut(s) 753, 842, 1054, 1082
BspANI GGCC 1 cut(s) 713
BspCNI CTCAG 6 cut(s) 241, 302, 355, 551, 851, 901
BspFNI CGCG 1 cut(s) 1091
BspLI GGNNCC 3 cut(s) 280, 309, 562
BspMAI CTGCAG 2 cut(s) 244, 829
BspMI ACCTGC 1 cut(s) 832
BspPI GGATC 3 cut(s) 824, 856, 1139
BspQI GCTCTTC 1 cut(s) 260
BspT107I GGYRCC 1 cut(s) 278
BspTNI GGTCTC 1 cut(s) 153
BsrDI GCAATG 4 cut(s) 454, 487, 553, 967
BsrI ACTGG 3 cut(s) 534, 925, 1133
BssECI CCNNGG 6 cut(s) 201, 259, 283, 496, 580, 714
BssMI GATC 5 cut(s) 100, 829, 861, 985, 1131
BssT1I CCWWGG 4 cut(s) 259, 283, 496, 714
Bst2UI CCWGG 3 cut(s) 202, 416, 581
Bst4CI ACNGT 5 cut(s) 128, 188, 568, 628, 980
Bst6I CTCTTC 1 cut(s) 260
BstAPI GCANNNNNTGC 1 cut(s) 1051
BstC8I GCNNGC 3 cut(s) 662, 729, 1052
BstDSI CCRYGG 2 cut(s) 259, 496
BstENI CCTNNNNNAGG 1 cut(s) 1026
BstF5I GGATG 1 cut(s) 33
BstFNI CGCG 1 cut(s) 1091
BstH2I RGCGCY 1 cut(s) 1060
BstHHI GCGC 2 cut(s) 1059, 1093
BstKTI GATC 5 cut(s) 103, 832, 864, 988, 1134
BstMAI GTCTC 2 cut(s) 153, 353
BstMBI GATC 5 cut(s) 100, 829, 861, 985, 1131
BstMWI GCNNNNNNNGC 9 cut(s) 10, 203, 428, 477, 501, 543, 1051, 1056, 1090
BstNI CCWGG 3 cut(s) 202, 416, 581
BstNSI RCATGY 2 cut(s) 874, 1054
BstPAI GACNNNNGTC 1 cut(s) 365
BstSCI CCNGG 3 cut(s) 200, 414, 579
BstSFI CTRYAG 2 cut(s) 240, 825
BstSLI GKGCMC 1 cut(s) 575
BstUI CGCG 1 cut(s) 1091
BstV1I GCAGC 7 cut(s) 97, 209, 226, 254, 431, 822, 1110
BstV2I GAAGAC 1 cut(s) 1011
BstX2I RGATCY 2 cut(s) 829, 861
BstXI CCANNNNNNTGG 1 cut(s) 337
BstYI RGATCY 2 cut(s) 829, 861
BsuRI GGCC 1 cut(s) 713
BtgI CCRYGG 2 cut(s) 259, 496
BtsCI GGATG 1 cut(s) 33
BtsIMutI CAGTG 5 cut(s) 527, 573, 633, 985, 1126
BveI ACCTGC 1 cut(s) 832
Cac8I GCNNGC 3 cut(s) 662, 729, 1052
CaiI CAGNNNCTG 1 cut(s) 248
CfoI GCGC 2 cut(s) 1059, 1093
Cfr13I GGNCC 2 cut(s) 701, 821
Csp6I GTAC 2 cut(s) 279, 928
CspCI CAANNNNNGTGG 2 cut(s) 609, 644
CviAII CATG 7 cut(s) 260, 473, 497, 757, 871, 1012, 1051
CviQI GTAC 2 cut(s) 279, 928
DpnI GATC 5 cut(s) 102, 831, 863, 987, 1133
DpnII GATC 5 cut(s) 100, 829, 861, 985, 1131
DraI TTTAAA 2 cut(s) 67, 145
DraIII CACNNNGTG 2 cut(s) 518, 570
DrdI GACNNNNNNGTC 1 cut(s) 1154
DseDI GACNNNNNNGTC 1 cut(s) 1154
EaeI YGGCCR 1 cut(s) 711
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
EciI GGCGGA 1 cut(s) 742
Ecl136II GAGCTC 1 cut(s) 253
Eco130I CCWWGG 4 cut(s) 259, 283, 496, 714
Eco24I GRGCYC 1 cut(s) 255
Eco31I GGTCTC 1 cut(s) 153
Eco32I GATATC 1 cut(s) 587
Eco47I GGWCC 2 cut(s) 701, 821
Eco53kI GAGCTC 1 cut(s) 253
EcoICRI GAGCTC 1 cut(s) 253
EcoNI CCTNNNNNAGG 1 cut(s) 1026
EcoRII CCWGG 3 cut(s) 200, 414, 579
EcoRV GATATC 1 cut(s) 587
EcoT14I CCWWGG 4 cut(s) 259, 283, 496, 714
EcoT22I ATGCAT 1 cut(s) 33
EcoT38I GRGCYC 1 cut(s) 255
ErhI CCWWGG 4 cut(s) 259, 283, 496, 714
FaeI CATG 7 cut(s) 263, 476, 500, 760, 874, 1015, 1054
FatI CATG 7 cut(s) 259, 472, 496, 756, 870, 1011, 1050
FauNDI CATATG 1 cut(s) 604
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 8 cut(s) 86, 198, 240, 243, 420, 811, 1055, 1099
FokI GGATG 1 cut(s) 40
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 8 cut(s) 86, 198, 240, 243, 420, 811, 1055, 1099
FspBI CTAG 2 cut(s) 20, 191
GlaI GCGC 2 cut(s) 1058, 1092
GluI GCNGC 8 cut(s) 86, 198, 240, 243, 420, 811, 1055, 1099
GsuI CTGGAG 1 cut(s) 563
HaeII RGCGCY 1 cut(s) 1060
HaeIII GGCC 1 cut(s) 713
HhaI GCGC 2 cut(s) 1059, 1093
Hin1II CATG 7 cut(s) 263, 476, 500, 760, 874, 1015, 1054
Hin6I GCGC 2 cut(s) 1057, 1091
HinP1I GCGC 2 cut(s) 1057, 1091
HinfI GANTC 5 cut(s) 230, 425, 452, 1066, 1106
HphI GGTGA 1 cut(s) 881
Hpy166II GTNNAC 2 cut(s) 821, 889
Hpy188I TCNGA 6 cut(s) 174, 250, 292, 541, 616, 672
Hpy188III TCNNGA 7 cut(s) 95, 191, 459, 699, 781, 998, 1022
Hpy8I GTNNAC 2 cut(s) 821, 889
HpyAV CCTTC 6 cut(s) 179, 527, 631, 730, 843, 875
HpyCH4III ACNGT 5 cut(s) 128, 188, 568, 628, 980
HpyCH4V TGCA 8 cut(s) 13, 31, 242, 272, 447, 760, 827, 1145
HpyF10VI GCNNNNNNNGC 9 cut(s) 10, 203, 428, 477, 501, 543, 1051, 1056, 1090
Hsp92II CATG 7 cut(s) 263, 476, 500, 760, 874, 1015, 1054
HspAI GCGC 2 cut(s) 1057, 1091
KpnI GGTACC 1 cut(s) 282
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 5 cut(s) 100, 829, 861, 985, 1131
LguI GCTCTTC 1 cut(s) 260
LmnI GCTCC 2 cut(s) 1123, 1162
Lsp1109I GCAGC 7 cut(s) 97, 209, 226, 254, 431, 822, 1110
LweI GCATC 4 cut(s) 18, 40, 254, 1132
MaeI CTAG 2 cut(s) 20, 191
MaeIII GTNAC 2 cut(s) 15, 367
MalI GATC 5 cut(s) 102, 831, 863, 987, 1133
MboI GATC 5 cut(s) 100, 829, 861, 985, 1131
MboII GAAGA 9 cut(s) 221, 224, 236, 247, 474, 498, 795, 961, 1016
MfeI CAATTG 1 cut(s) 273
MflI RGATCY 2 cut(s) 829, 861
MhlI GDGCHC 3 cut(s) 255, 575, 1128
MluCI AATT 6 cut(s) 273, 380, 401, 608, 680, 1085
MlyI GAGTC 1 cut(s) 1075
MmeI TCCRAC 2 cut(s) 5, 344
MnlI CCTC 8 cut(s) 187, 358, 666, 682, 712, 847, 910, 1022
Mph1103I ATGCAT 1 cut(s) 33
MroXI GAANNNNTTC 1 cut(s) 179
MseI TTAA 3 cut(s) 66, 144, 555
MslI CAYNNNNRTG 1 cut(s) 335
MspA1I CMGCKG 2 cut(s) 422, 842
MspR9I CCNGG 3 cut(s) 202, 416, 581
MunI CAATTG 1 cut(s) 273
MvaI CCWGG 3 cut(s) 202, 416, 581
MvnI CGCG 1 cut(s) 1091
MwoI GCNNNNNNNGC 9 cut(s) 10, 203, 428, 477, 501, 543, 1051, 1056, 1090
NcoI CCATGG 2 cut(s) 259, 496
NdeI CATATG 1 cut(s) 604
NdeII GATC 5 cut(s) 100, 829, 861, 985, 1131
NlaIII CATG 7 cut(s) 263, 476, 500, 760, 874, 1015, 1054
NlaIV GGNNCC 3 cut(s) 280, 309, 562
NmuCI GTSAC 1 cut(s) 367
NsiI ATGCAT 1 cut(s) 33
NspI RCATGY 2 cut(s) 874, 1054
PaeI GCATGC 1 cut(s) 1054
PciI ACATGT 1 cut(s) 870
PciSI GCTCTTC 1 cut(s) 260
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 4 cut(s) 230, 425, 452, 1106
PflMI CCANNNNNTGG 1 cut(s) 128
PkrI GCNGC 8 cut(s) 87, 199, 241, 244, 421, 812, 1056, 1100
PleI GAGTC 1 cut(s) 1074
PpsI GAGTC 1 cut(s) 1074
PscI ACATGT 1 cut(s) 870
PshAI GACNNNNGTC 1 cut(s) 365
PshBI ATTAAT 1 cut(s) 555
Psp124BI GAGCTC 1 cut(s) 255
Psp6I CCWGG 3 cut(s) 200, 414, 579
PspGI CCWGG 3 cut(s) 200, 414, 579
PspN4I GGNNCC 3 cut(s) 280, 309, 562
PspPI GGNCC 2 cut(s) 701, 821
PstI CTGCAG 2 cut(s) 244, 829
PstNI CAGNNNCTG 1 cut(s) 248
PsuI RGATCY 2 cut(s) 829, 861
PvuII CAGCTG 1 cut(s) 422
RsaI GTAC 2 cut(s) 280, 929
RsaNI GTAC 2 cut(s) 279, 928
RseI CAYNNNNRTG 1 cut(s) 335
SacI GAGCTC 1 cut(s) 255
SapI GCTCTTC 1 cut(s) 260
SaqAI TTAA 3 cut(s) 66, 144, 555
SatI GCNGC 8 cut(s) 86, 198, 240, 243, 420, 811, 1055, 1099
Sau3AI GATC 5 cut(s) 100, 829, 861, 985, 1131
Sau96I GGNCC 2 cut(s) 701, 821
SchI GAGTC 1 cut(s) 1075
ScrFI CCNGG 3 cut(s) 202, 416, 581
SduI GDGCHC 3 cut(s) 255, 575, 1128
SfaNI GCATC 4 cut(s) 18, 40, 254, 1132
SfcI CTRYAG 2 cut(s) 240, 825
SinI GGWCC 2 cut(s) 701, 821
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 779
SmoI CTYRAG 1 cut(s) 779
SphI GCATGC 1 cut(s) 1054
Sse9I AATT 6 cut(s) 273, 380, 401, 608, 680, 1085
SsiI CCGC 4 cut(s) 753, 842, 1054, 1082
SspMI CTAG 2 cut(s) 20, 191
SstI GAGCTC 1 cut(s) 255
StyD4I CCNGG 3 cut(s) 200, 414, 579
StyI CCWWGG 4 cut(s) 259, 283, 496, 714
TaaI ACNGT 5 cut(s) 128, 188, 568, 628, 980
TaqI TCGA 1 cut(s) 96
TaqII GACCGA 1 cut(s) 718
TasI AATT 6 cut(s) 273, 380, 401, 608, 680, 1085
TauI GCSGC 1 cut(s) 1057
TfiI GAWTC 4 cut(s) 230, 425, 452, 1106
Tru1I TTAA 3 cut(s) 66, 144, 555
Tru9I TTAA 3 cut(s) 66, 144, 555
TscAI CASTG 5 cut(s) 534, 573, 633, 985, 1133
TseFI GTSAC 1 cut(s) 367
TseI GCWGC 7 cut(s) 85, 197, 239, 242, 419, 810, 1098
Tsp45I GTSAC 1 cut(s) 367
TspDTI ATGAA 8 cut(s) 237, 243, 393, 414, 444, 621, 782, 1017
TspGWI ACGGA 1 cut(s) 320
TspRI CASTG 5 cut(s) 534, 573, 633, 985, 1133
Van91I CCANNNNNTGG 1 cut(s) 128
VpaK11BI GGWCC 2 cut(s) 701, 821
VspI ATTAAT 1 cut(s) 555
XagI CCTNNNNNAGG 1 cut(s) 1026
XbaI TCTAGA 1 cut(s) 190
XceI RCATGY 2 cut(s) 874, 1054
XcmI CCANNNNNNNNNTGG 1 cut(s) 479
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 2 cut(s) 20, 191
Zsp2I ATGCAT 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.