Rorug02G0588800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002629
Physical Location & Seq
Reverse (-)
71102703 .. 71103734
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0588800.1

Sequence Viewer

Length: 741 bp
ATGGATCCGGATCAACCCCAAAACTCTGGAATCAAAATCTACAACAACGCCGTGTACGGCGACCCACCCGACCCCGACCCCGAGGACCAGGCCAAGCCCAAGTCCGCCTCCTCCTCCTCCTGCATCGGCTCCAACCCCAGTAAGCCACCTTCTTCATCCCTCCCTCTCGTCCGCCTCAACCACGACCAACTCCACGGCCGCAAACGACGTGCCGTCGCCAAAGGCGTCCAGAAAACCATCTCCAAAACCTCTATGCTCGTCAACTTCCTCCCCACCGGAACCCTCCTCACTTTCGAGATGGTCCTCCCCGCCATCTACCGCAACGGCGAATGCACCACCGTCACTACCACCATGACTCACGTCCTCCTAGGGATCTGCTCCCTCTCCTGCTTCTTCTTCCACTTCACCGACAGTTTTAAAGGCGCCGATGGGAAGATGTACTACGGCTTCGTGACGCCTAAGGGGTTGGCGGTTTTCAAGCCGGGGCTGACGGTGGACGTGCCTAAGGATGAGAGGTATAGGGTGGGGCTGACGGACTTTGTTCATGCCATAATGTCAGTGATGGTGTTCATGGCGATTGCGTTTTCGGATCGGCGTGTGACGGAGTGTATGTTTCCCGGGCACGAGAAGGACATGGATGAGGTCATGGAGAGTTTCCCGCTGATGGTGGGAATTGTTTGCAGTGGCTTGTTTCTTGTGTTTCCGAATTCTCGCCATGGGATTGGCTGCATGGCCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009959 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

246

Amino Acids

26.96

Weight (kDa)

7.62

Isoelectric Point (pI)

36.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 82 - 243 1.5e-65 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 422
AccIII TCCGGA 1 cut(s) 7
AciI CCGC 8 cut(s) 105, 172, 199, 309, 319, 470, 659, 735
AclWI GGATC 4 cut(s) 12, 18, 380, 597
AcoI YGGCCR 2 cut(s) 196, 732
AcsI RAATTY 1 cut(s) 706
AcyI GRCGYC 3 cut(s) 225, 423, 455
AfaI GTAC 2 cut(s) 56, 440
AfiI CCNNNNNNNGG 1 cut(s) 664
AgsI TTSAA 1 cut(s) 478
AhdI GACNNNNNGTC 1 cut(s) 212
AjiI CACGTC 3 cut(s) 209, 361, 499
AjnI CCWGG 1 cut(s) 87
AlwI GGATC 4 cut(s) 12, 18, 380, 597
Ama87I CYCGRG 2 cut(s) 80, 617
Aor13HI TCCGGA 1 cut(s) 7
AoxI GGCC 3 cut(s) 90, 196, 732
ApeKI GCWGC 1 cut(s) 726
ApoI RAATTY 1 cut(s) 706
AspA2I CCTAGG 1 cut(s) 367
AspLEI GCGC 1 cut(s) 425
AspS9I GGNCC 2 cut(s) 85, 301
AsuC2I CCSGG 3 cut(s) 483, 618, 619
AsuHPI GGTGA 1 cut(s) 397
AvaI CYCGRG 2 cut(s) 80, 617
AvaII GGWCC 2 cut(s) 85, 301
AvrII CCTAGG 1 cut(s) 367
AxyI CCTNAGG 2 cut(s) 459, 504
BaeGI GKGCMC 1 cut(s) 624
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 422
BarI GAAGNNNNNNTAC 6 cut(s) 133, 165, 425, 431, 457, 463
BauI CACGAG 1 cut(s) 623
BbvI GCAGC 1 cut(s) 713
BccI CCATC 6 cut(s) 245, 292, 320, 422, 556, 658
BceAI ACGGC 6 cut(s) 35, 73, 197, 211, 340, 460
BciT130I CCWGG 1 cut(s) 89
BcnI CCSGG 3 cut(s) 483, 618, 619
BfaI CTAG 1 cut(s) 368
BfoI RGCGCY 1 cut(s) 426
BisI GCNGC 3 cut(s) 199, 727, 735
BlnI CCTAGG 1 cut(s) 367
BlsI GCNGC 3 cut(s) 200, 728, 736
Bme1390I CCNGG 4 cut(s) 89, 483, 618, 619
Bme18I GGWCC 2 cut(s) 85, 301
BmeRI GACNNNNNGTC 1 cut(s) 212
BmeT110I CYCGRG 2 cut(s) 80, 617
BmgBI CACGTC 3 cut(s) 209, 361, 499
BmgT120I GGNCC 2 cut(s) 85, 301
BmiI GGNNCC 4 cut(s) 6, 130, 280, 424
BmrFI CCNGG 4 cut(s) 89, 483, 618, 619
BmrI ACTGGG 1 cut(s) 132
BmsI GCATC 1 cut(s) 132
BmuI ACTGGG 1 cut(s) 132
BoxI GACNNNNGTC 1 cut(s) 359
BpuMI CCSGG 3 cut(s) 483, 618, 619
BsaBI GATNNNNATC 1 cut(s) 9
BsaHI GRCGYC 3 cut(s) 225, 423, 455
BsaJI CCNNGG 6 cut(s) 81, 193, 367, 482, 617, 715
BsaWI WCCGGW 2 cut(s) 7, 275
BsaXI ACNNNNNCTCC 2 cut(s) 596, 626
Bsc4I CCNNNNNNNGG 1 cut(s) 664
Bse1I ACTGG 1 cut(s) 138
Bse21I CCTNAGG 2 cut(s) 459, 504
Bse8I GATNNNNATC 1 cut(s) 9
BseAI TCCGGA 1 cut(s) 7
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 6 cut(s) 81, 193, 367, 482, 617, 715
BseGI GGATG 3 cut(s) 155, 514, 643
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 664
BseNI ACTGG 1 cut(s) 138
BseRI GAGGAG 4 cut(s) 100, 103, 106, 275
BseSI GKGCMC 1 cut(s) 624
BseX3I CGGCCG 1 cut(s) 196
BseXI GCAGC 1 cut(s) 713
Bsh1285I CGRYCG 1 cut(s) 199
BshFI GGCC 3 cut(s) 92, 198, 734
BshNI GGYRCC 1 cut(s) 422
BsiEI CGRYCG 1 cut(s) 199
BsiHKCI CYCGRG 2 cut(s) 80, 617
BsiSI CCGG 4 cut(s) 8, 276, 482, 618
BslI CCNNNNNNNGG 1 cut(s) 664
BsmI GAATGC 1 cut(s) 335
BsnI GGCC 3 cut(s) 92, 198, 734
BsoBI CYCGRG 2 cut(s) 80, 617
Bsp1286I GDGCHC 1 cut(s) 624
Bsp13I TCCGGA 1 cut(s) 7
Bsp143I GATC 4 cut(s) 4, 10, 372, 589
Bsp19I CCATGG 1 cut(s) 715
BspACI CCGC 8 cut(s) 105, 172, 199, 309, 319, 470, 659, 735
BspANI GGCC 3 cut(s) 92, 198, 734
BspEI TCCGGA 1 cut(s) 7
BspLI GGNNCC 4 cut(s) 6, 130, 280, 424
BspPI GGATC 4 cut(s) 12, 18, 380, 597
BspT107I GGYRCC 1 cut(s) 422
BsrI ACTGG 1 cut(s) 138
BssECI CCNNGG 6 cut(s) 81, 193, 367, 482, 617, 715
BssMI GATC 4 cut(s) 4, 10, 372, 589
BssNI GRCGYC 3 cut(s) 225, 423, 455
BssSI CACGAG 1 cut(s) 623
BssT1I CCWWGG 2 cut(s) 367, 715
Bst2BI CACGAG 1 cut(s) 623
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 3 cut(s) 340, 413, 493
BstACI GRCGYC 3 cut(s) 225, 423, 455
BstDEI CTNAG 2 cut(s) 459, 504
BstDSI CCRYGG 2 cut(s) 193, 715
BstF5I GGATG 3 cut(s) 155, 514, 643
BstH2I RGCGCY 1 cut(s) 426
BstHHI GCGC 1 cut(s) 425
BstKTI GATC 4 cut(s) 7, 13, 375, 592
BstMBI GATC 4 cut(s) 4, 10, 372, 589
BstMCI CGRYCG 1 cut(s) 199
BstNI CCWGG 1 cut(s) 89
BstPAI GACNNNNGTC 1 cut(s) 359
BstSCI CCNGG 4 cut(s) 87, 481, 616, 617
BstSLI GKGCMC 1 cut(s) 624
BstV1I GCAGC 1 cut(s) 713
BstX2I RGATCY 2 cut(s) 4, 372
BstXI CCANNNNNNTGG 2 cut(s) 26, 722
BstYI RGATCY 2 cut(s) 4, 372
BstZI CGGCCG 1 cut(s) 196
Bsu36I CCTNAGG 2 cut(s) 459, 504
BsuRI GGCC 3 cut(s) 92, 198, 734
BtgI CCRYGG 2 cut(s) 193, 715
BtrI CACGTC 3 cut(s) 209, 361, 499
BtsCI GGATG 3 cut(s) 155, 514, 643
BtsI GCAGTG 1 cut(s) 688
BtsIMutI CAGTG 2 cut(s) 564, 688
CfoI GCGC 1 cut(s) 425
Cfr13I GGNCC 2 cut(s) 85, 301
Cfr9I CCCGGG 1 cut(s) 617
CseI GACGC 2 cut(s) 214, 463
Csp6I GTAC 2 cut(s) 55, 439
CviAII CATG 8 cut(s) 352, 545, 571, 634, 646, 716, 730, 738
CviQI GTAC 2 cut(s) 55, 439
DdeI CTNAG 2 cut(s) 459, 504
DinI GGCGCC 1 cut(s) 424
DpnI GATC 4 cut(s) 6, 12, 374, 591
DpnII GATC 4 cut(s) 4, 10, 372, 589
DraI TTTAAA 1 cut(s) 418
DriI GACNNNNNGTC 1 cut(s) 212
EaeI YGGCCR 2 cut(s) 196, 732
EagI CGGCCG 1 cut(s) 196
Eam1105I GACNNNNNGTC 1 cut(s) 212
EciI GGCGGA 2 cut(s) 94, 161
EclXI CGGCCG 1 cut(s) 196
Eco130I CCWWGG 2 cut(s) 367, 715
Eco47I GGWCC 2 cut(s) 85, 301
Eco52I CGGCCG 1 cut(s) 196
Eco81I CCTNAGG 2 cut(s) 459, 504
Eco88I CYCGRG 2 cut(s) 80, 617
EcoRI GAATTC 1 cut(s) 706
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 2 cut(s) 367, 715
EgeI GGCGCC 1 cut(s) 424
EheI GGCGCC 1 cut(s) 424
ErhI CCWWGG 2 cut(s) 367, 715
FaeI CATG 8 cut(s) 355, 548, 574, 637, 649, 719, 733, 741
FatI CATG 8 cut(s) 351, 544, 570, 633, 645, 715, 729, 737
FauI CCCGC 2 cut(s) 316, 666
Fnu4HI GCNGC 3 cut(s) 199, 727, 735
FokI GGATG 3 cut(s) 142, 521, 650
Fsp4HI GCNGC 3 cut(s) 199, 727, 735
FspBI CTAG 1 cut(s) 368
GlaI GCGC 1 cut(s) 424
GluI GCNGC 3 cut(s) 199, 727, 735
HaeII RGCGCY 1 cut(s) 426
HaeIII GGCC 3 cut(s) 92, 198, 734
HapII CCGG 4 cut(s) 8, 276, 482, 618
HgaI GACGC 2 cut(s) 214, 463
HhaI GCGC 1 cut(s) 425
Hin1I GRCGYC 3 cut(s) 225, 423, 455
Hin1II CATG 8 cut(s) 355, 548, 574, 637, 649, 719, 733, 741
Hin6I GCGC 1 cut(s) 423
HinP1I GCGC 1 cut(s) 423
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 2 cut(s) 30, 355
HpaII CCGG 4 cut(s) 8, 276, 482, 618
HphI GGTGA 1 cut(s) 397
Hpy166II GTNNAC 3 cut(s) 55, 262, 496
Hpy188I TCNGA 2 cut(s) 589, 705
Hpy188III TCNNGA 5 cut(s) 8, 27, 229, 295, 451
Hpy8I GTNNAC 3 cut(s) 55, 262, 496
Hpy99I CGWCG 2 cut(s) 210, 218
HpyAV CCTTC 2 cut(s) 159, 622
HpyCH4III ACNGT 3 cut(s) 340, 413, 493
HpyCH4IV ACGT 3 cut(s) 208, 360, 498
HpyCH4V TGCA 4 cut(s) 123, 333, 681, 729
HpyF3I CTNAG 2 cut(s) 459, 504
HpySE526I ACGT 3 cut(s) 208, 360, 498
Hsp92I GRCGYC 3 cut(s) 225, 423, 455
Hsp92II CATG 8 cut(s) 355, 548, 574, 637, 649, 719, 733, 741
HspAI GCGC 1 cut(s) 423
KasI GGCGCC 1 cut(s) 422
Kpn2I TCCGGA 1 cut(s) 7
Kzo9I GATC 4 cut(s) 4, 10, 372, 589
LmnI GCTCC 2 cut(s) 134, 383
Lsp1109I GCAGC 1 cut(s) 713
LweI GCATC 1 cut(s) 132
MaeI CTAG 1 cut(s) 368
MaeII ACGT 3 cut(s) 208, 360, 498
MaeIII GTNAC 3 cut(s) 340, 451, 598
MalI GATC 4 cut(s) 6, 12, 374, 591
MboI GATC 4 cut(s) 4, 10, 372, 589
MboII GAAGA 4 cut(s) 144, 385, 388, 445
MflI RGATCY 2 cut(s) 4, 372
MhlI GDGCHC 1 cut(s) 624
MluCI AATT 2 cut(s) 672, 706
Mly113I GGCGCC 1 cut(s) 423
MlyI GAGTC 1 cut(s) 349
MmeI TCCRAC 1 cut(s) 156
MroI TCCGGA 1 cut(s) 7
MseI TTAA 1 cut(s) 417
MspA1I CMGCKG 1 cut(s) 661
MspI CCGG 4 cut(s) 8, 276, 482, 618
MspR9I CCNGG 4 cut(s) 89, 483, 618, 619
Mva1269I GAATGC 1 cut(s) 335
MvaI CCWGG 1 cut(s) 89
NarI GGCGCC 1 cut(s) 423
NciI CCSGG 3 cut(s) 483, 618, 619
NcoI CCATGG 1 cut(s) 715
NdeII GATC 4 cut(s) 4, 10, 372, 589
NlaIII CATG 8 cut(s) 355, 548, 574, 637, 649, 719, 733, 741
NlaIV GGNNCC 4 cut(s) 6, 130, 280, 424
NmuCI GTSAC 3 cut(s) 340, 451, 598
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PctI GAATGC 1 cut(s) 335
PfeI GAWTC 1 cut(s) 30
PkrI GCNGC 3 cut(s) 200, 728, 736
PleI GAGTC 1 cut(s) 349
PluTI GGCGCC 1 cut(s) 426
PpsI GAGTC 1 cut(s) 349
PshAI GACNNNNGTC 1 cut(s) 359
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 4 cut(s) 6, 130, 280, 424
PspPI GGNCC 2 cut(s) 85, 301
PsuI RGATCY 2 cut(s) 4, 372
RsaI GTAC 2 cut(s) 56, 440
RsaNI GTAC 2 cut(s) 55, 439
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 3 cut(s) 199, 727, 735
Sau3AI GATC 4 cut(s) 4, 10, 372, 589
Sau96I GGNCC 2 cut(s) 85, 301
SchI GAGTC 1 cut(s) 349
ScrFI CCNGG 4 cut(s) 89, 483, 618, 619
SduI GDGCHC 1 cut(s) 624
SetI ASST 7 cut(s) 151, 211, 251, 363, 501, 518, 645
SfaNI GCATC 1 cut(s) 132
SfoI GGCGCC 1 cut(s) 424
SinI GGWCC 2 cut(s) 85, 301
SmaI CCCGGG 1 cut(s) 619
Sse9I AATT 2 cut(s) 672, 706
SsiI CCGC 8 cut(s) 105, 172, 199, 309, 319, 470, 659, 735
SspDI GGCGCC 1 cut(s) 422
SspMI CTAG 1 cut(s) 368
StyD4I CCNGG 4 cut(s) 87, 481, 616, 617
StyI CCWWGG 2 cut(s) 367, 715
TaaI ACNGT 3 cut(s) 340, 413, 493
TaiI ACGT 3 cut(s) 211, 363, 501
TaqI TCGA 1 cut(s) 294
TasI AATT 2 cut(s) 672, 706
TatI WGTACW 1 cut(s) 438
TauI GCSGC 2 cut(s) 201, 737
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 2 cut(s) 564, 688
TseFI GTSAC 3 cut(s) 340, 451, 598
TseI GCWGC 1 cut(s) 726
Tsp45I GTSAC 3 cut(s) 340, 451, 598
TspDTI ATGAA 3 cut(s) 144, 533, 559
TspGWI ACGGA 2 cut(s) 548, 617
TspMI CCCGGG 1 cut(s) 617
TspRI CASTG 2 cut(s) 564, 688
VpaK11BI GGWCC 2 cut(s) 85, 301
XapI RAATTY 1 cut(s) 706
XmaI CCCGGG 1 cut(s) 617
XmaJI CCTAGG 1 cut(s) 367
XspI CTAG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.