Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002629

Physical Location & Seq

Genomic Coordinates Forward (+)

57913814 .. 57917238

Gene Structure 3425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG316300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTCTGTCGAGAATATAACTGAAAAAGAGACGGAGGCCACAGAAAATGAATTGAAGCTCATAAATGATGAGTTGGAGAAGGTGCTGGTAGCTGAAGCTAAGGATGAAATTTGCAATGATTCATCTGGAAGGAACAGCCATGTTAGCAACGGAAGAAGTAGTCATGGTAGCACCATTACACTGAGTGGGAAGATGCTAGAAGTCCCAGAGAGCAATGGGATTAATGGAACTACAGTCTGCCCACTCCAGGGATATCTTTTCGGGTCAGCATATGAGTTGTCAGAAACAACAACAGTAGCGAAGAAGGAGCAGAGGACATCTCTTGGTGAGCTGTTTCAGAAGAGTAAGTTGACCGAAGAGAATTATTCTGGAGCAAAACTCAGCAAGGAGGAGAAGCGAGCAGATCAGAAGGAAGCTGATAAGTCTTCCATTCATTTGATGAAAAAGAAGCTCATGAAAAAAGTGCTTCACATGAATGCTTCTTCTCGGAGCTCTGCAGCAGCTGCTGATGCTGGCTCAGCAGAAACAAAACTGAATAAGATCCTTCAGATGTTCCACAGAAAAGTTCACCCAGAAAACTCGAATGCTGGGGAAAAATCTGGCAAGTACCAAAAGGGCGAAAAGAAAAAGAGAATGAGCACTGATGGGATTTGCAACCACCGAGATCAGGTCCTCCCAGATGATCAAGACATCATGTTATATCCTGAACAAGTCTTTTCATCAAAACAGAGCATGCGACGCTACAAGAGCCAATCTAACCCGCCCCAGTTTGCACTTGGCGGGCTTGATTCAAATGGGAACAAGGAGCACTGGATCAAAACTGATGCAGACTACCTAGTCCTGGAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0010817 GO:0016020 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0051049 GO:0065007 GO:0065008 GO:0071944 GO:2000012

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

283

Amino Acids

31.48

Weight (kDa)

7.1

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14090 AT5G14090
fragaria_vesca	FvH4_4g23460 FvH4_6g53810
malus_domestica	MD09G1008500.v1.1 MD13G1122400.v1.1 MD16G1122900.v1.1 MD17G1002300.v1.1
prunus_persica	Prupe.1G222800_v2.0.a1 Prupe.1G222800_v2.0.a1 Prupe.3G308500_v2.0.a1 Prupe.3G308500_v2.0.a1
pyrus_communis	pycom111g00680 pycom16g10510
rosa_chinensis	RchiOBHm_Chr4g0429831
rosa_laevigata	RLG00000007040 RLG00000022367
rosa_multiflora	Rmu_co8344809.1_g000001 Rmu_sc0006762.1_g000005 Rmu_sc0012106.1_g000002 Rmu_sc0018638.1_g000001 Rmu_sc0018801.1_g000006 Rmu_sc0037594.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076940 Rroxscaffold_5G00371590
rosa_rugosa	Rorug02G0588700 Rorug02G0588800 Rorug04G0238500 Rorug04G0238500 Rorug04G0238500
rosa_samantha	Rh2AG668000 Rh2BG679500 Rh2CG642300 Rh2DG693000 Rh4AG294700 Rh4BG301100 Rh4CG316300 Rh4DG298000
rosa_wichuraiana	Rw2G054760 Rw4G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	836
AciI	CCGC	2 cut(s)	761, 780
AclWI	GGATC	2 cut(s)	535, 821
AcsI	RAATTY	1 cut(s)	108
AcuI	CTGAAG	2 cut(s)	114, 530
AdeI	CACNNNGTG	1 cut(s)	185
AfaI	GTAC	1 cut(s)	608
AfiI	CCNNNNNNNGG	4 cut(s)	247, 248, 667, 841
AgsI	TTSAA	2 cut(s)	55, 792
AjnI	CCWGG	2 cut(s)	246, 840
AluBI	AGCT	9 cut(s)	58, 92, 98, 331, 416, 451, 492, 503, 847
AluI	AGCT	9 cut(s)	58, 92, 98, 331, 416, 451, 492, 503, 847
Alw21I	GWGCWC	3 cut(s)	494, 641, 810
Alw26I	GTCTC	1 cut(s)	23
AlwI	GGATC	2 cut(s)	535, 821
AlwNI	CAGNNNCTG	2 cut(s)	503, 506
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	3 cut(s)	497, 500, 503
ApoI	RAATTY	1 cut(s)	108
AseI	ATTAAT	1 cut(s)	222
AspS9I	GGNCC	1 cut(s)	670
AsuHPI	GGTGA	2 cut(s)	338, 560
AvaII	GGWCC	1 cut(s)	670
BanII	GRGCYC	1 cut(s)	494
BbsI	GAAGAC	1 cut(s)	417
Bbv12I	GWGCWC	3 cut(s)	494, 641, 810
BbvI	GCAGC	3 cut(s)	490, 509, 512
BccI	CCATC	1 cut(s)	638
BciT130I	CCWGG	2 cut(s)	248, 842
BclI	TGATCA	1 cut(s)	682
BcoDI	GTCTC	1 cut(s)	23
BfaI	CTAG	2 cut(s)	197, 836
BfmI	CTRYAG	2 cut(s)	231, 495
BisI	GCNGC	3 cut(s)	498, 501, 504
BlpI	GCTNAGC	1 cut(s)	517
BlsI	GCNGC	3 cut(s)	499, 502, 505
Bme1390I	CCNGG	2 cut(s)	248, 842
Bme18I	GGWCC	1 cut(s)	670
BmgT120I	GGNCC	1 cut(s)	670
BmrFI	CCNGG	2 cut(s)	248, 842
BmrI	ACTGGG	1 cut(s)	760
BmsI	GCATC	3 cut(s)	183, 499, 814
BmuI	ACTGGG	1 cut(s)	760
BpiI	GAAGAC	1 cut(s)	417
BplI	GAGNNNNNCTC	4 cut(s)	304, 336, 363, 395
BpmI	CTGGAG	2 cut(s)	230, 390
Bpu10I	CCTNAGC	1 cut(s)	99
Bpu1102I	GCTNAGC	1 cut(s)	517
BsaJI	CCNNGG	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	4 cut(s)	247, 248, 667, 841
Bse1I	ACTGG	2 cut(s)	766, 815
Bse3DI	GCAATG	2 cut(s)	121, 220
BseBI	CCWGG	2 cut(s)	248, 842
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	4 cut(s)	247, 248, 667, 841
BseMI	GCAATG	2 cut(s)	121, 220
BseMII	CTCAG	3 cut(s)	173, 394, 531
BseNI	ACTGG	2 cut(s)	766, 815
BseRI	GAGGAG	1 cut(s)	404
BseXI	GCAGC	3 cut(s)	490, 509, 512
BseYI	CCCAGC	1 cut(s)	587
BshFI	GGCC	1 cut(s)	38
BsiHKAI	GWGCWC	3 cut(s)	494, 641, 810
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	4 cut(s)	247, 248, 667, 841
BsmAI	GTCTC	1 cut(s)	23
BsmBI	CGTCTC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	188
BsmI	GAATGC	2 cut(s)	481, 589
BsnI	GGCC	1 cut(s)	38
Bsp1286I	GDGCHC	3 cut(s)	494, 641, 810
Bsp143I	GATC	5 cut(s)	403, 540, 664, 682, 813
Bsp1720I	GCTNAGC	1 cut(s)	517
BspACI	CCGC	2 cut(s)	761, 780
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	3 cut(s)	174, 393, 530
BspHI	TCATGA	1 cut(s)	453
BspMAI	CTGCAG	1 cut(s)	499
BspPI	GGATC	2 cut(s)	535, 821
BsrDI	GCAATG	2 cut(s)	121, 220
BsrI	ACTGG	2 cut(s)	766, 815
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	5 cut(s)	403, 540, 664, 682, 813
Bst2UI	CCWGG	2 cut(s)	248, 842
Bst4CI	ACNGT	2 cut(s)	235, 295
Bst6I	CTCTTC	2 cut(s)	335, 351
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstC8I	GCNNGC	4 cut(s)	399, 514, 734, 782
BstDEI	CTNAG	4 cut(s)	99, 182, 380, 517
BstF5I	GGATG	1 cut(s)	109
BstKTI	GATC	5 cut(s)	406, 543, 667, 685, 816
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	5 cut(s)	403, 540, 664, 682, 813
BstMWI	GCNNNNNNNGC	6 cut(s)	144, 503, 509, 518, 738, 747
BstNI	CCWGG	2 cut(s)	248, 842
BstNSI	RCATGY	1 cut(s)	736
BstSCI	CCNGG	2 cut(s)	246, 840
BstSFI	CTRYAG	2 cut(s)	231, 495
BstV1I	GCAGC	3 cut(s)	490, 509, 512
BstV2I	GAAGAC	1 cut(s)	417
BstX2I	RGATCY	1 cut(s)	540
BstYI	RGATCY	1 cut(s)	540
BsuRI	GGCC	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	3 cut(s)	179, 639, 808
Cac8I	GCNNGC	4 cut(s)	399, 514, 734, 782
CaiI	CAGNNNCTG	2 cut(s)	503, 506
CciI	TCATGA	1 cut(s)	453
Cfr13I	GGNCC	1 cut(s)	670
CseI	GACGC	1 cut(s)	747
Csp6I	GTAC	1 cut(s)	607
CviAII	CATG	6 cut(s)	140, 164, 454, 472, 694, 733
CviQI	GTAC	1 cut(s)	607
DdeI	CTNAG	4 cut(s)	99, 182, 380, 517
DpnI	GATC	5 cut(s)	405, 542, 666, 684, 815
DpnII	GATC	5 cut(s)	403, 540, 664, 682, 813
DraIII	CACNNNGTG	1 cut(s)	185
DrdI	GACNNNNNNGTC	1 cut(s)	836
DseDI	GACNNNNNNGTC	1 cut(s)	836
Eam1104I	CTCTTC	2 cut(s)	335, 351
EarI	CTCTTC	2 cut(s)	335, 351
Ecl136II	GAGCTC	1 cut(s)	492
Eco24I	GRGCYC	1 cut(s)	494
Eco32I	GATATC	1 cut(s)	254
Eco47I	GGWCC	1 cut(s)	670
Eco53kI	GAGCTC	1 cut(s)	492
Eco57I	CTGAAG	2 cut(s)	114, 530
EcoICRI	GAGCTC	1 cut(s)	492
EcoO109I	RGGNCCY	1 cut(s)	670
EcoRII	CCWGG	2 cut(s)	246, 840
EcoRV	GATATC	1 cut(s)	254
EcoT38I	GRGCYC	1 cut(s)	494
Esp3I	CGTCTC	1 cut(s)	23
FaeI	CATG	6 cut(s)	143, 167, 457, 475, 697, 736
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	6 cut(s)	139, 163, 453, 471, 693, 732
FauI	CCCGC	2 cut(s)	768, 773
FauNDI	CATATG	1 cut(s)	271
FbaI	TGATCA	1 cut(s)	682
Fnu4HI	GCNGC	3 cut(s)	498, 501, 504
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	494
Fsp4HI	GCNGC	3 cut(s)	498, 501, 504
FspBI	CTAG	2 cut(s)	197, 836
GluI	GCNGC	3 cut(s)	498, 501, 504
GsaI	CCCAGC	1 cut(s)	591
GsuI	CTGGAG	2 cut(s)	230, 390
HaeIII	GGCC	1 cut(s)	38
HgaI	GACGC	1 cut(s)	747
Hin1II	CATG	6 cut(s)	143, 167, 457, 475, 697, 736
HincII	GTYRAC	1 cut(s)	351
HindII	GTYRAC	1 cut(s)	351
HinfI	GANTC	2 cut(s)	119, 788
HphI	GGTGA	2 cut(s)	338, 560
Hpy166II	GTNNAC	2 cut(s)	351, 568
Hpy188I	TCNGA	5 cut(s)	283, 339, 408, 489, 549
Hpy188III	TCNNGA	6 cut(s)	10, 126, 369, 454, 686, 704
Hpy8I	GTNNAC	2 cut(s)	351, 568
Hpy99I	CGWCG	1 cut(s)	741
HpyAV	CCTTC	5 cut(s)	73, 123, 298, 403, 554
HpyCH4III	ACNGT	2 cut(s)	235, 295
HpyCH4V	TGCA	5 cut(s)	114, 497, 654, 773, 827
HpyF10VI	GCNNNNNNNGC	6 cut(s)	144, 503, 509, 518, 738, 747
HpyF3I	CTNAG	4 cut(s)	99, 182, 380, 517
Hsp92II	CATG	6 cut(s)	143, 167, 457, 475, 697, 736
Ksp22I	TGATCA	1 cut(s)	682
Kzo9I	GATC	5 cut(s)	403, 540, 664, 682, 813
LmnI	GCTCC	5 cut(s)	307, 371, 489, 805, 844
Lsp1109I	GCAGC	3 cut(s)	490, 509, 512
LweI	GCATC	3 cut(s)	183, 499, 814
MaeI	CTAG	2 cut(s)	197, 836
MalI	GATC	5 cut(s)	405, 542, 666, 684, 815
MboI	GATC	5 cut(s)	403, 540, 664, 682, 813
MboII	GAAGA	7 cut(s)	165, 202, 313, 352, 368, 417, 474
MflI	RGATCY	1 cut(s)	540
MhlI	GDGCHC	3 cut(s)	494, 641, 810
MluCI	AATT	3 cut(s)	50, 108, 361
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	4 cut(s)	28, 306, 382, 683
MseI	TTAA	1 cut(s)	222
MslI	CAYNNNNRTG	1 cut(s)	474
MspA1I	CMGCKG	1 cut(s)	503
MspR9I	CCNGG	2 cut(s)	248, 842
Mva1269I	GAATGC	2 cut(s)	481, 589
MvaI	CCWGG	2 cut(s)	248, 842
MwoI	GCNNNNNNNGC	6 cut(s)	144, 503, 509, 518, 738, 747
NdeI	CATATG	1 cut(s)	271
NdeII	GATC	5 cut(s)	403, 540, 664, 682, 813
NlaIII	CATG	6 cut(s)	143, 167, 457, 475, 697, 736
NspI	RCATGY	1 cut(s)	736
PaeI	GCATGC	1 cut(s)	736
PagI	TCATGA	1 cut(s)	453
PctI	GAATGC	2 cut(s)	481, 589
PfeI	GAWTC	2 cut(s)	119, 788
PfoI	TCCNGGA	1 cut(s)	840
PkrI	GCNGC	3 cut(s)	499, 502, 505
PpuMI	RGGWCCY	1 cut(s)	670
PshBI	ATTAAT	1 cut(s)	222
Psp124BI	GAGCTC	1 cut(s)	494
Psp5II	RGGWCCY	1 cut(s)	670
Psp6I	CCWGG	2 cut(s)	246, 840
PspFI	CCCAGC	1 cut(s)	587
PspGI	CCWGG	2 cut(s)	246, 840
PspPI	GGNCC	1 cut(s)	670
PspPPI	RGGWCCY	1 cut(s)	670
PstI	CTGCAG	1 cut(s)	499
PstNI	CAGNNNCTG	2 cut(s)	503, 506
PsuI	RGATCY	1 cut(s)	540
PvuII	CAGCTG	1 cut(s)	503
RsaI	GTAC	1 cut(s)	608
RsaNI	GTAC	1 cut(s)	607
RseI	CAYNNNNRTG	1 cut(s)	474
SacI	GAGCTC	1 cut(s)	494
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	3 cut(s)	498, 501, 504
Sau3AI	GATC	5 cut(s)	403, 540, 664, 682, 813
Sau96I	GGNCC	1 cut(s)	670
ScrFI	CCNGG	2 cut(s)	248, 842
SduI	GDGCHC	3 cut(s)	494, 641, 810
SfaNI	GCATC	3 cut(s)	183, 499, 814
SfcI	CTRYAG	2 cut(s)	231, 495
SinI	GGWCC	1 cut(s)	670
SmiMI	CAYNNNNRTG	1 cut(s)	474
SphI	GCATGC	1 cut(s)	736
Sse9I	AATT	3 cut(s)	50, 108, 361
SsiI	CCGC	2 cut(s)	761, 780
SspMI	CTAG	2 cut(s)	197, 836
SstI	GAGCTC	1 cut(s)	494
StyD4I	CCNGG	2 cut(s)	246, 840
TaaI	ACNGT	2 cut(s)	235, 295
TaqI	TCGA	2 cut(s)	9, 581
TaqII	GACCGA	1 cut(s)	368
TasI	AATT	3 cut(s)	50, 108, 361
TfiI	GAWTC	2 cut(s)	119, 788
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	3 cut(s)	186, 646, 815
TseI	GCWGC	3 cut(s)	497, 500, 503
TspDTI	ATGAA	8 cut(s)	63, 111, 120, 422, 455, 470, 488, 708
TspGWI	ACGGA	2 cut(s)	47, 165
TspRI	CASTG	3 cut(s)	186, 646, 815
VpaK11BI	GGWCC	1 cut(s)	670
VspI	ATTAAT	1 cut(s)	222
XapI	RAATTY	1 cut(s)	108
XceI	RCATGY	1 cut(s)	736
XcmI	CCANNNNNNNNNTGG	1 cut(s)	773
XspI	CTAG	2 cut(s)	197, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.