AT5G14090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002629
Physical Location & Seq
Forward (+)
4547202 .. 4549675
2474 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G14090.1

Sequence Viewer

Length: 1077 bp
ATGAAGTTTTGGGGCTGGATGCATCATAAGTTCCGGGAGAATAGCAAAGAGCCATTAAAAGATGCTTCTACTGGCAACAGCTATTCCATTCTTTCAGCTCATCCATCCCTTGATAGCCAAGAGGTTTACCCAACAGCATGTGCTGGCTCCAGATACAATACTGGATTCAGAAAACAGGTCAACCTGTTCCAGGAAAGCTCCTTCGCAGGACCCAAGCAATACACAGAGGAAGACTTCAAGGATGAGAGAAACAGTGATTTTTTTGATGGATTTCTTGCCATTGGAACCCTTGGTGGAGAAACACTTCTTGATGAACAACCAGCAACGCCGACATTTGGCATGTCATTTGAGGACCCAGCAATAGATGATGCAGATGTGACAGAGAATGATTTGAAGCTCATAAGCAATGAATTGGATAAGTTCCTTGAGGCTGAAGCTAAAGAAGGACACCACCAACCATCAGGAAGAAACAGTGACACTAACACTATTGCATCCACCATTGAGGCCATTGAGGGAGTAGATGATGAAGAAGATAATCAGCCAATGAAGTTCCCACTCCAAGAGTATTTTTTTGGATCTCTAATCGAACTCCCAGAATCAAAGATTGCAGGGAAGAAGGATAGGGCATCACTTGGCGAACTGTTTCAAATAACAGAAGTGCAAGATAAACAATCAGAAAACATATATGGGAAGAAAAAGAAGCAACCCAATTCAGCTCACAAGTCCGCAAAGCATCTTGTGAAGAAGGTACTGAAAAAGATACACCCATCCTCAAGGGGCTCTGTCAGTGGTAAACCTGAAGTGGATTCCACAAAAAAGAAGTTCCAAAAGATGGTACAGGTTTTCCATAGGAAAGTACATCCAGAAGAATCCATAATGGAAACCAAAATATACAGCAGCGTGGCAAATCCAAAAAGCAGCAAAGCAAATTCTATTGACTTAACATTCGAGAAGGTGAACCATTGTCACGAGGCAAGTAAAAGATGTATCCAGTATGAGCTTAGAAGTTCTCGCTCAGCCAAAAACGGAGAACACTGGATCAAGACAGACGAAGACTATTTCGTGTTGGAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009959 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

358

Amino Acids

40.51

Weight (kDa)

5.86

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 832
AciI CCGC 1 cut(s) 726
AclWI GGATC 2 cut(s) 583, 1046
AcsI RAATTY 1 cut(s) 928
AcuI CTGAAG 2 cut(s) 453, 819
AfaI GTAC 3 cut(s) 750, 837, 858
AfiI CCNNNNNNNGG 3 cut(s) 190, 335, 832
AgsI TTSAA 3 cut(s) 238, 394, 647
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 7 cut(s) 81, 98, 198, 397, 437, 716, 1000
AluI AGCT 7 cut(s) 81, 98, 198, 397, 437, 716, 1000
AlwI GGATC 2 cut(s) 583, 1046
AoxI GGCC 1 cut(s) 504
ApeKI GCWGC 2 cut(s) 897, 918
ApoI RAATTY 1 cut(s) 928
ArsI GACNNNNNNTTYG 2 cut(s) 929, 961
Asp700I GAANNNNTTC 2 cut(s) 303, 642
AspS9I GGNCC 2 cut(s) 209, 352
AsuC2I CCSGG 1 cut(s) 35
AsuHPI GGTGA 1 cut(s) 967
AvaII GGWCC 2 cut(s) 209, 352
BanII GRGCYC 1 cut(s) 782
BauI CACGAG 1 cut(s) 968
BbsI GAAGAC 2 cut(s) 237, 1059
BbvI GCAGC 2 cut(s) 909, 930
BccI CCATC 5 cut(s) 112, 260, 466, 775, 826
BciT130I CCWGG 1 cut(s) 191
BciVI GTATCC 1 cut(s) 998
BcnI CCSGG 1 cut(s) 35
BfuI GTATCC 1 cut(s) 998
BisI GCNGC 2 cut(s) 898, 919
BlpI GCTNAGC 1 cut(s) 1015
BlsI GCNGC 2 cut(s) 899, 920
Bme1390I CCNGG 2 cut(s) 35, 191
Bme18I GGWCC 2 cut(s) 209, 352
BmgT120I GGNCC 2 cut(s) 209, 352
BmiI GGNNCC 4 cut(s) 148, 211, 286, 354
BmrFI CCNGG 2 cut(s) 35, 191
BmsI GCATC 7 cut(s) 9, 31, 52, 358, 500, 635, 742
BpiI GAAGAC 2 cut(s) 237, 1059
BpmI CTGGAG 1 cut(s) 133
Bpu1102I GCTNAGC 1 cut(s) 1015
BpuEI CTTGAG 2 cut(s) 446, 757
BpuMI CCSGG 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 289
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 335, 832
Bse1I ACTGG 4 cut(s) 76, 166, 991, 1040
Bse3DI GCAATG 1 cut(s) 412
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 7 cut(s) 24, 100, 104, 247, 491, 767, 859
BseLI CCNNNNNNNGG 3 cut(s) 190, 335, 832
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 1 cut(s) 1029
BseNI ACTGG 4 cut(s) 76, 166, 991, 1040
BseXI GCAGC 2 cut(s) 909, 930
BseYI CCCAGC 1 cut(s) 355
BshFI GGCC 1 cut(s) 506
BsiSI CCGG 1 cut(s) 34
BslI CCNNNNNNNGG 3 cut(s) 190, 335, 832
BsnI GGCC 1 cut(s) 506
Bsp1286I GDGCHC 1 cut(s) 782
Bsp143I GATC 2 cut(s) 575, 1038
Bsp1720I GCTNAGC 1 cut(s) 1015
BspACI CCGC 1 cut(s) 726
BspANI GGCC 1 cut(s) 506
BspCNI CTCAG 1 cut(s) 1028
BspLI GGNNCC 4 cut(s) 148, 211, 286, 354
BspPI GGATC 2 cut(s) 583, 1046
BsrDI GCAATG 1 cut(s) 412
BsrI ACTGG 4 cut(s) 76, 166, 991, 1040
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 2 cut(s) 575, 1038
BssSI CACGAG 1 cut(s) 968
BssT1I CCWWGG 1 cut(s) 289
Bst2BI CACGAG 1 cut(s) 968
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 4 cut(s) 254, 473, 642, 1074
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 2 cut(s) 1001, 1015
BstENI CCTNNNNNAGG 1 cut(s) 188
BstF5I GGATG 7 cut(s) 24, 100, 104, 247, 491, 767, 859
BstKTI GATC 2 cut(s) 578, 1041
BstMBI GATC 2 cut(s) 575, 1038
BstNI CCWGG 1 cut(s) 191
BstNSI RCATGY 2 cut(s) 141, 343
BstSCI CCNGG 2 cut(s) 33, 189
BstV1I GCAGC 2 cut(s) 909, 930
BstV2I GAAGAC 2 cut(s) 237, 1059
BstX2I RGATCY 1 cut(s) 575
BstYI RGATCY 1 cut(s) 575
BsuI GTATCC 1 cut(s) 998
BsuRI GGCC 1 cut(s) 506
BtsCI GGATG 7 cut(s) 24, 100, 104, 247, 491, 767, 859
BtsIMutI CAGTG 4 cut(s) 259, 478, 793, 1033
Cac8I GCNNGC 1 cut(s) 145
Cfr13I GGNCC 2 cut(s) 209, 352
Csp6I GTAC 3 cut(s) 749, 836, 857
CviAII CATG 2 cut(s) 138, 340
CviQI GTAC 3 cut(s) 749, 836, 857
DdeI CTNAG 2 cut(s) 1001, 1015
DpnI GATC 2 cut(s) 577, 1040
DpnII GATC 2 cut(s) 575, 1038
Eco130I CCWWGG 1 cut(s) 289
Eco24I GRGCYC 1 cut(s) 782
Eco47I GGWCC 2 cut(s) 209, 352
Eco57I CTGAAG 2 cut(s) 453, 819
EcoNI CCTNNNNNAGG 1 cut(s) 188
EcoO109I RGGNCCY 2 cut(s) 209, 352
EcoRII CCWGG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 289
EcoT22I ATGCAT 1 cut(s) 24
EcoT38I GRGCYC 1 cut(s) 782
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 2 cut(s) 141, 343
FatI CATG 2 cut(s) 137, 339
Fnu4HI GCNGC 2 cut(s) 898, 919
FokI GGATG 7 cut(s) 31, 87, 91, 254, 478, 754, 846
FriOI GRGCYC 1 cut(s) 782
Fsp4HI GCNGC 2 cut(s) 898, 919
GluI GCNGC 2 cut(s) 898, 919
GsaI CCCAGC 1 cut(s) 359
GsuI CTGGAG 1 cut(s) 133
HaeIII GGCC 1 cut(s) 506
HapII CCGG 1 cut(s) 34
Hin1II CATG 2 cut(s) 141, 343
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 4 cut(s) 165, 596, 806, 869
HpaII CCGG 1 cut(s) 34
HphI GGTGA 1 cut(s) 967
Hpy166II GTNNAC 4 cut(s) 127, 181, 794, 958
Hpy188I TCNGA 2 cut(s) 170, 676
Hpy188III TCNNGA 7 cut(s) 150, 308, 462, 863, 949, 968, 1042
Hpy8I GTNNAC 4 cut(s) 127, 181, 794, 958
HpyAV CCTTC 5 cut(s) 211, 437, 610, 739, 946
HpyCH4III ACNGT 4 cut(s) 254, 473, 642, 1074
HpyCH4V TGCA 5 cut(s) 22, 371, 491, 608, 661
HpyF3I CTNAG 2 cut(s) 1001, 1015
Hsp92II CATG 2 cut(s) 141, 343
Kzo9I GATC 2 cut(s) 575, 1038
LmnI GCTCC 2 cut(s) 152, 203
Lsp1109I GCAGC 2 cut(s) 909, 930
LweI GCATC 7 cut(s) 9, 31, 52, 358, 500, 635, 742
MaeIII GTNAC 3 cut(s) 376, 473, 965
MalI GATC 2 cut(s) 577, 1040
MboI GATC 2 cut(s) 575, 1038
MboII GAAGA 9 cut(s) 242, 477, 539, 542, 625, 703, 754, 878, 1064
MflI RGATCY 1 cut(s) 575
MhlI GDGCHC 1 cut(s) 782
MluCI AATT 3 cut(s) 410, 709, 928
MmeI TCCRAC 1 cut(s) 1047
MnlI CCTC 8 cut(s) 115, 220, 343, 421, 496, 505, 781, 964
Mph1103I ATGCAT 1 cut(s) 24
MroXI GAANNNNTTC 2 cut(s) 303, 642
MseI TTAA 2 cut(s) 56, 941
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 2 cut(s) 35, 191
MvaI CCWGG 1 cut(s) 191
NciI CCSGG 1 cut(s) 35
NdeII GATC 2 cut(s) 575, 1038
NlaIII CATG 2 cut(s) 141, 343
NlaIV GGNNCC 4 cut(s) 148, 211, 286, 354
NmuCI GTSAC 3 cut(s) 376, 473, 965
NsiI ATGCAT 1 cut(s) 24
NspI RCATGY 2 cut(s) 141, 343
PdmI GAANNNNTTC 2 cut(s) 303, 642
PfeI GAWTC 4 cut(s) 165, 596, 806, 869
PflMI CCANNNNNTGG 1 cut(s) 832
PfoI TCCNGGA 2 cut(s) 33, 189
PkrI GCNGC 2 cut(s) 899, 920
PpuMI RGGWCCY 2 cut(s) 209, 352
Psp5II RGGWCCY 2 cut(s) 209, 352
Psp6I CCWGG 1 cut(s) 189
PspFI CCCAGC 1 cut(s) 355
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 4 cut(s) 148, 211, 286, 354
PspPI GGNCC 2 cut(s) 209, 352
PspPPI RGGWCCY 2 cut(s) 209, 352
PsuI RGATCY 1 cut(s) 575
RsaI GTAC 3 cut(s) 750, 837, 858
RsaNI GTAC 3 cut(s) 749, 836, 857
SaqAI TTAA 2 cut(s) 56, 941
SatI GCNGC 2 cut(s) 898, 919
Sau3AI GATC 2 cut(s) 575, 1038
Sau96I GGNCC 2 cut(s) 209, 352
ScrFI CCNGG 2 cut(s) 35, 191
SduI GDGCHC 1 cut(s) 782
SfaNI GCATC 7 cut(s) 9, 31, 52, 358, 500, 635, 742
SinI GGWCC 2 cut(s) 209, 352
SmlI CTYRAG 2 cut(s) 425, 772
SmoI CTYRAG 2 cut(s) 425, 772
Sse9I AATT 3 cut(s) 410, 709, 928
SsiI CCGC 1 cut(s) 726
StyD4I CCNGG 2 cut(s) 33, 189
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 4 cut(s) 254, 473, 642, 1074
TaqI TCGA 2 cut(s) 585, 948
TasI AATT 3 cut(s) 410, 709, 928
TatI WGTACW 1 cut(s) 856
TfiI GAWTC 4 cut(s) 165, 596, 806, 869
Tru1I TTAA 2 cut(s) 56, 941
Tru9I TTAA 2 cut(s) 56, 941
TscAI CASTG 4 cut(s) 259, 478, 793, 1040
TseFI GTSAC 3 cut(s) 376, 473, 965
TseI GCWGC 2 cut(s) 897, 918
Tsp45I GTSAC 3 cut(s) 376, 473, 965
TspDTI ATGAA 5 cut(s) 17, 327, 423, 540, 560
TspGWI ACGGA 1 cut(s) 1041
TspRI CASTG 4 cut(s) 259, 478, 793, 1040
Van91I CCANNNNNTGG 1 cut(s) 832
VpaK11BI GGWCC 2 cut(s) 209, 352
XagI CCTNNNNNAGG 1 cut(s) 188
XapI RAATTY 1 cut(s) 928
XceI RCATGY 2 cut(s) 141, 343
XmnI GAANNNNTTC 2 cut(s) 303, 642
Zsp2I ATGCAT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.