Prupe.3G308500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0002629
Physical Location & Seq
Reverse (-)
26867799 .. 26870648
2850 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G308500.1

Sequence Viewer

Length: 1161 bp
ATGCAGTTATTACAATGGGTGCACCACAAATTTCGGCACAGTAGCATTGAGCCTCTCAAGGATCTCAGTATTGCTCAGCCATCAGTTGATGATCAACATTCCCATATGAAGTCAAGCTTTGGCTCCAGCTATGGATCTACATCCTTGGAGCCACCTAAAAGGGACCAAGAAAAATCTTTTTCTGAATCTGAAGCCAATAGAGAAGAAGAAACATCTGCTATTATCTCAGAGCTATTTCATGGCTTTCTCACCATTGGAACACTTGGCTCTGAACCAAGTATCAATGAGCCGGAAACACCAACTTTTGCAACAACTTTAGAGAACTTAAGTGAGCCAAAAACAGAAGTGACACAGAATGACTTGAAGCTCATCAGCTATGAGCTAGAAAAGTTCCTTGAGGCGGAGACAAAGGAAGAAGGGGTTCGTGCATCATCAGCAAGGAACAGTCATGCTAGCACTATTACACTCAATGGAAAGCAAATGGAGGAATCTGAAGATGAAGAGTACTGGACGACAACTGTGGTACGTCCGCTCAAAGAATATCTCTTTGGGTCCTCAATTGAACTACCAGACACAAGAATAGAAGCAAAGAAAGAAAAGACATCACTGCAAGAGCTGTTTGATAGGACAAAGATGACAACGGAAAATTGTAAGGAGACAAGTGAGAGTGTGGATATAAAATCCGAGCATAAGCATACATCTGCCATGCAGTTCATGAAGAAGATCATAAAAAAACTCCATGCTTCTTCGAAAAGCTCTGCCCCTTGTACTGGTGGTGATGTAACTGATCCTGTTTCCACCAGGAAGACATTTGGTGAGGCATCTGATTCTGTTTCAACCAAGAAGAAACCCCATAAGATCTTACGTATGTTCCATAGAAGGATCCATCCTGAAAGCTCTACAGCTGCAAGAGAATTTGTCGAGGCCGAGAAATACAAGGACAAGAACAATTACAGTGCCCATGGTCGTTGTAGAGAAAATATGATGCTCATGGGCAGAGACAACAGAAGGTTCCCTCAAGGGGCAATGATAAAGGAGGGGACAGAACATGGTAAGAAATACATGAACTTGCCCCAATACAGGCTAAGTGGCAGCAATTTTAGAAGAAAGGGAGAGCACTGGATTAAAACAGATGCAGACTACTTGGTGTTGGAGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009959 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

387

Amino Acids

44.03

Weight (kDa)

6.49

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 532
AciI CCGC 2 cut(s) 401, 530
AclWI GGATC 5 cut(s) 69, 142, 782, 877, 890
AcsI RAATTY 2 cut(s) 29, 914
AcuI CTGAAG 2 cut(s) 210, 513
AfaI GTAC 3 cut(s) 506, 525, 769
AfiI CCNNNNNNNGG 4 cut(s) 400, 770, 1021, 1080
AflII CTTAAG 1 cut(s) 325
AgsI TTSAA 3 cut(s) 364, 563, 837
AjnI CCWGG 1 cut(s) 800
AjuI GAANNNNNNNTTGG 2 cut(s) 531, 563
Alw21I GWGCWC 2 cut(s) 24, 1119
Alw26I GTCTC 3 cut(s) 398, 650, 993
Alw44I GTGCAC 1 cut(s) 20
AlwI GGATC 5 cut(s) 69, 142, 782, 877, 890
AoxI GGCC 1 cut(s) 924
ApaLI GTGCAC 1 cut(s) 20
ApeKI GCWGC 2 cut(s) 905, 1092
ApoI RAATTY 2 cut(s) 29, 914
Asp700I GAANNNNTTC 1 cut(s) 420
AspS9I GGNCC 2 cut(s) 163, 552
AsuHPI GGTGA 3 cut(s) 241, 788, 827
AsuII TTCGAA 1 cut(s) 749
AsuNHI GCTAGC 1 cut(s) 452
AvaII GGWCC 2 cut(s) 163, 552
BaeGI GKGCMC 2 cut(s) 24, 961
BamHI GGATCC 1 cut(s) 882
BbsI GAAGAC 1 cut(s) 812
Bbv12I GWGCWC 2 cut(s) 24, 1119
BbvI GCAGC 2 cut(s) 892, 1104
BccI CCATC 2 cut(s) 88, 894
BciT130I CCWGG 1 cut(s) 802
BclI TGATCA 1 cut(s) 91
BcoDI GTCTC 3 cut(s) 398, 650, 993
BfaI CTAG 2 cut(s) 383, 453
BfmI CTRYAG 2 cut(s) 900, 1157
BfrI CTTAAG 1 cut(s) 325
BglII AGATCT 1 cut(s) 858
BisI GCNGC 2 cut(s) 906, 1093
BlpI GCTNAGC 1 cut(s) 75
BlsI GCNGC 2 cut(s) 907, 1094
BmcAI AGTACT 1 cut(s) 506
Bme1390I CCNGG 1 cut(s) 802
Bme18I GGWCC 2 cut(s) 163, 552
BmgT120I GGNCC 2 cut(s) 163, 552
BmiI GGNNCC 6 cut(s) 124, 150, 164, 553, 884, 1013
BmrFI CCNGG 1 cut(s) 802
BmsI GCATC 4 cut(s) 437, 830, 975, 1123
BmtI GCTAGC 1 cut(s) 456
BpiI GAAGAC 1 cut(s) 812
BpmI CTGGAG 1 cut(s) 109
Bpu1102I GCTNAGC 1 cut(s) 75
Bpu14I TTCGAA 1 cut(s) 749
BpuEI CTTGAG 3 cut(s) 41, 416, 1002
BsaAI YACGTR 1 cut(s) 866
BsaBI GATNNNNATC 1 cut(s) 139
BsaJI CCNNGG 2 cut(s) 144, 961
Bsc4I CCNNNNNNNGG 4 cut(s) 400, 770, 1021, 1080
Bse1I ACTGG 3 cut(s) 512, 775, 1124
Bse3DI GCAATG 1 cut(s) 1032
Bse8I GATNNNNATC 1 cut(s) 139
BseBI CCWGG 1 cut(s) 802
BseDI CCNNGG 2 cut(s) 144, 961
BseGI GGATG 2 cut(s) 140, 886
BseJI GATNNNNATC 1 cut(s) 139
BseLI CCNNNNNNNGG 4 cut(s) 400, 770, 1021, 1080
BseMI GCAATG 1 cut(s) 1032
BseMII CTCAG 3 cut(s) 79, 89, 240
BseNI ACTGG 3 cut(s) 512, 775, 1124
BseSI GKGCMC 2 cut(s) 24, 961
BseXI GCAGC 2 cut(s) 892, 1104
BshFI GGCC 1 cut(s) 926
BsiHKAI GWGCWC 2 cut(s) 24, 1119
BsiSI CCGG 1 cut(s) 290
BslFI GGGAC 2 cut(s) 176, 1054
BslI CCNNNNNNNGG 4 cut(s) 400, 770, 1021, 1080
BsmAI GTCTC 3 cut(s) 398, 650, 993
BsmFI GGGAC 2 cut(s) 176, 1054
BsnI GGCC 1 cut(s) 926
Bsp119I TTCGAA 1 cut(s) 749
Bsp1286I GDGCHC 3 cut(s) 24, 961, 1119
Bsp143I GATC 7 cut(s) 61, 91, 134, 723, 787, 858, 882
Bsp1720I GCTNAGC 1 cut(s) 75
Bsp19I CCATGG 1 cut(s) 961
BspACI CCGC 2 cut(s) 401, 530
BspANI GGCC 1 cut(s) 926
BspCNI CTCAG 3 cut(s) 78, 88, 239
BspHI TCATGA 1 cut(s) 714
BspLI GGNNCC 6 cut(s) 124, 150, 164, 553, 884, 1013
BspOI GCTAGC 1 cut(s) 456
BspPI GGATC 5 cut(s) 69, 142, 782, 877, 890
BspT104I TTCGAA 1 cut(s) 749
BspTI CTTAAG 1 cut(s) 325
BsrBI CCGCTC 1 cut(s) 532
BsrDI GCAATG 1 cut(s) 1032
BsrI ACTGG 3 cut(s) 512, 775, 1124
BssECI CCNNGG 2 cut(s) 144, 961
BssMI GATC 7 cut(s) 61, 91, 134, 723, 787, 858, 882
BssT1I CCWWGG 2 cut(s) 144, 961
Bst2UI CCWGG 1 cut(s) 802
Bst4CI ACNGT 4 cut(s) 41, 446, 520, 956
Bst6I CTCTTC 1 cut(s) 495
BstAFI CTTAAG 1 cut(s) 325
BstBAI YACGTR 1 cut(s) 866
BstBI TTCGAA 1 cut(s) 749
BstC8I GCNNGC 1 cut(s) 454
BstDEI CTNAG 4 cut(s) 65, 75, 226, 1085
BstDSI CCRYGG 1 cut(s) 961
BstF5I GGATG 2 cut(s) 140, 886
BstKTI GATC 7 cut(s) 64, 94, 137, 726, 790, 861, 885
BstMAI GTCTC 3 cut(s) 398, 650, 993
BstMBI GATC 7 cut(s) 61, 91, 134, 723, 787, 858, 882
BstMWI GCNNNNNNNGC 1 cut(s) 434
BstNI CCWGG 1 cut(s) 802
BstSCI CCNGG 1 cut(s) 800
BstSFI CTRYAG 2 cut(s) 900, 1157
BstSLI GKGCMC 2 cut(s) 24, 961
BstSNI TACGTA 1 cut(s) 866
BstV1I GCAGC 2 cut(s) 892, 1104
BstV2I GAAGAC 1 cut(s) 812
BstX2I RGATCY 4 cut(s) 61, 134, 858, 882
BstYI RGATCY 4 cut(s) 61, 134, 858, 882
BsuRI GGCC 1 cut(s) 926
BtgI CCRYGG 1 cut(s) 961
BtsCI GGATG 2 cut(s) 140, 886
BtsI GCAGTG 1 cut(s) 605
BtsIMutI CAGTG 3 cut(s) 605, 961, 1117
Cac8I GCNNGC 1 cut(s) 454
CciI TCATGA 1 cut(s) 714
Cfr13I GGNCC 2 cut(s) 163, 552
Csp6I GTAC 3 cut(s) 505, 524, 768
CviAII CATG 9 cut(s) 239, 449, 706, 715, 740, 962, 991, 1049, 1063
CviQI GTAC 3 cut(s) 505, 524, 768
DdeI CTNAG 4 cut(s) 65, 75, 226, 1085
DpnI GATC 7 cut(s) 63, 93, 136, 725, 789, 860, 884
DpnII GATC 7 cut(s) 61, 91, 134, 723, 787, 858, 882
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
EciI GGCGGA 1 cut(s) 416
Eco105I TACGTA 1 cut(s) 866
Eco130I CCWWGG 2 cut(s) 144, 961
Eco47I GGWCC 2 cut(s) 163, 552
Eco57I CTGAAG 2 cut(s) 210, 513
EcoO109I RGGNCCY 1 cut(s) 552
EcoRII CCWGG 1 cut(s) 800
EcoT14I CCWWGG 2 cut(s) 144, 961
ErhI CCWWGG 2 cut(s) 144, 961
FaeI CATG 9 cut(s) 242, 452, 709, 718, 743, 965, 994, 1052, 1066
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FaqI GGGAC 2 cut(s) 176, 1054
FatI CATG 9 cut(s) 238, 448, 705, 714, 739, 961, 990, 1048, 1062
FauNDI CATATG 1 cut(s) 105
FbaI TGATCA 1 cut(s) 91
Fnu4HI GCNGC 2 cut(s) 906, 1093
FokI GGATG 2 cut(s) 127, 873
Fsp4HI GCNGC 2 cut(s) 906, 1093
FspBI CTAG 2 cut(s) 383, 453
GluI GCNGC 2 cut(s) 906, 1093
GsuI CTGGAG 1 cut(s) 109
HaeIII GGCC 1 cut(s) 926
HapII CCGG 1 cut(s) 290
Hin1II CATG 9 cut(s) 242, 452, 709, 718, 743, 965, 994, 1052, 1066
HindIII AAGCTT 1 cut(s) 115
HinfI GANTC 3 cut(s) 185, 488, 827
HpaII CCGG 1 cut(s) 290
HphI GGTGA 3 cut(s) 241, 788, 827
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 7 cut(s) 184, 190, 229, 271, 493, 685, 826
Hpy188III TCNNGA 2 cut(s) 715, 890
Hpy8I GTNNAC 1 cut(s) 22
HpyAV CCTTC 3 cut(s) 410, 873, 1002
HpyCH4III ACNGT 4 cut(s) 41, 446, 520, 956
HpyCH4IV ACGT 2 cut(s) 526, 865
HpyCH4V TGCA 8 cut(s) 4, 22, 308, 428, 610, 709, 908, 1136
HpyF10VI GCNNNNNNNGC 1 cut(s) 434
HpyF3I CTNAG 4 cut(s) 65, 75, 226, 1085
HpySE526I ACGT 2 cut(s) 526, 865
Hsp92II CATG 9 cut(s) 242, 452, 709, 718, 743, 965, 994, 1052, 1066
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 7 cut(s) 61, 91, 134, 723, 787, 858, 882
LmnI GCTCC 3 cut(s) 128, 148, 1153
Lsp1109I GCAGC 2 cut(s) 892, 1104
LweI GCATC 4 cut(s) 437, 830, 975, 1123
MaeI CTAG 2 cut(s) 383, 453
MaeII ACGT 2 cut(s) 526, 865
MaeIII GTNAC 2 cut(s) 346, 781
MalI GATC 7 cut(s) 63, 93, 136, 725, 789, 860, 884
MbiI CCGCTC 1 cut(s) 532
MboI GATC 7 cut(s) 61, 91, 134, 723, 787, 858, 882
MfeI CAATTG 1 cut(s) 558
MflI RGATCY 4 cut(s) 61, 134, 858, 882
MhlI GDGCHC 3 cut(s) 24, 961, 1119
MluCI AATT 6 cut(s) 29, 558, 646, 914, 949, 1096
MmeI TCCRAC 1 cut(s) 1131
MnlI CCTC 8 cut(s) 63, 391, 478, 565, 811, 916, 1026, 1030
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 2 cut(s) 326, 1125
MspA1I CMGCKG 1 cut(s) 905
MspCI CTTAAG 1 cut(s) 325
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 1 cut(s) 802
MunI CAATTG 1 cut(s) 558
MvaI CCWGG 1 cut(s) 802
MwoI GCNNNNNNNGC 1 cut(s) 434
NcoI CCATGG 1 cut(s) 961
NdeI CATATG 1 cut(s) 105
NdeII GATC 7 cut(s) 61, 91, 134, 723, 787, 858, 882
NheI GCTAGC 1 cut(s) 452
NlaIII CATG 9 cut(s) 242, 452, 709, 718, 743, 965, 994, 1052, 1066
NlaIV GGNNCC 6 cut(s) 124, 150, 164, 553, 884, 1013
NmeAIII GCCGAG 1 cut(s) 952
NmuCI GTSAC 1 cut(s) 346
NspV TTCGAA 1 cut(s) 749
PagI TCATGA 1 cut(s) 714
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 3 cut(s) 185, 488, 827
PkrI GCNGC 2 cut(s) 907, 1094
Ppu21I YACGTR 1 cut(s) 866
PpuMI RGGWCCY 1 cut(s) 552
Psp5II RGGWCCY 1 cut(s) 552
Psp6I CCWGG 1 cut(s) 800
PspGI CCWGG 1 cut(s) 800
PspN4I GGNNCC 6 cut(s) 124, 150, 164, 553, 884, 1013
PspPI GGNCC 2 cut(s) 163, 552
PspPPI RGGWCCY 1 cut(s) 552
PsuI RGATCY 4 cut(s) 61, 134, 858, 882
PvuII CAGCTG 1 cut(s) 905
RsaI GTAC 3 cut(s) 506, 525, 769
RsaNI GTAC 3 cut(s) 505, 524, 768
SaqAI TTAA 2 cut(s) 326, 1125
SatI GCNGC 2 cut(s) 906, 1093
Sau3AI GATC 7 cut(s) 61, 91, 134, 723, 787, 858, 882
Sau96I GGNCC 2 cut(s) 163, 552
ScaI AGTACT 1 cut(s) 506
ScrFI CCNGG 1 cut(s) 802
SduI GDGCHC 3 cut(s) 24, 961, 1119
SfaNI GCATC 4 cut(s) 437, 830, 975, 1123
SfcI CTRYAG 2 cut(s) 900, 1157
SfuI TTCGAA 1 cut(s) 749
SinI GGWCC 2 cut(s) 163, 552
SmlI CTYRAG 4 cut(s) 56, 325, 395, 1017
SmoI CTYRAG 4 cut(s) 56, 325, 395, 1017
SnaBI TACGTA 1 cut(s) 866
Sse9I AATT 6 cut(s) 29, 558, 646, 914, 949, 1096
SsiI CCGC 2 cut(s) 401, 530
SspMI CTAG 2 cut(s) 383, 453
StyD4I CCNGG 1 cut(s) 800
StyI CCWWGG 2 cut(s) 144, 961
TaaI ACNGT 4 cut(s) 41, 446, 520, 956
TaiI ACGT 2 cut(s) 529, 868
TaqI TCGA 2 cut(s) 749, 921
TasI AATT 6 cut(s) 29, 558, 646, 914, 949, 1096
TatI WGTACW 2 cut(s) 504, 767
TfiI GAWTC 3 cut(s) 185, 488, 827
Tru1I TTAA 2 cut(s) 326, 1125
Tru9I TTAA 2 cut(s) 326, 1125
TscAI CASTG 3 cut(s) 612, 961, 1124
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 2 cut(s) 905, 1092
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 6 cut(s) 122, 227, 513, 703, 731, 1079
TspGWI ACGGA 1 cut(s) 656
TspRI CASTG 3 cut(s) 612, 961, 1124
Vha464I CTTAAG 1 cut(s) 325
VneI GTGCAC 1 cut(s) 20
VpaK11BI GGWCC 2 cut(s) 163, 552
XapI RAATTY 2 cut(s) 29, 914
XmnI GAANNNNTTC 1 cut(s) 420
XspI CTAG 2 cut(s) 383, 453
ZrmI AGTACT 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.