Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0002629

Physical Location & Seq

Genomic Coordinates Forward (+)

466990 .. 468512

Gene Structure 1523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g00680.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGAAGTCATTCAGCCATCAGCTGACAGTTTATTTGGCGAGCAGTGCAGCCACTGAGATGACGTGTTTATATGGAACCCTTTTGTTTGCCTTTTCAGCTCAGCCATCACTTGATGACCAAGATGCCTATATGAAGTCAAACTTTGGCTCCAGATACGGATCTACATCCTTGCAGCCACCTGCAAGAGACCAAGAAAAATCTTTTGCTGAATCTGAAGCCAAGAGAGAAGAAGAAACATCTGCTACCATCTCAGACCTGTTTCATGGTTTTCTCACCATTGGAACTCTTGGCTCAGAATCAAGTATCAATGAGCCTGAAACACCAACTTTTGCGACGACTTTAGAGAACTTAACTCAGCAAAAAGCAGAGGTAACAGAGAACGACTTGAAGCTCATCAGCTATGAGCTAGAGAAGTTTCTTGAGGCTGAGACAAAGGAAGAAGGGGTCTGTGCATCATCAGCAAGGGACAGTAATGCTAGCTCTATTACACTCAGTGGCATGCAAATGGAGGAATCTGAAGATGAAGAATACTGGACTGCAGCATATCCACTCAAAGGATATCTCTTTGGGTCCTCAACTGAATTACCAGAAACAACAATGGAGGCAAAGAAAGAAAAGACATCACTGCAAGAGCTGTTTGACAGGACCAAAATCACAACTGATTATAAGGAGAAAAGTGAGATTGAGGAGATAGAAGTCAAACATAAGCATAGATCTGCAATGGGGTTCATGAAGAAGATGATTAAAAAATTCCATGCTTCTTCAAAGAGATCTTCCCCTTCTACAGGTGGTGATGCAACTGATCCTGTTTCCATCAAGAAGAAACTTGGTGAGGCATCTGATTCTCTTTCAACCAAGAAGAAACCCCGTAAGGTTGGGTTCCTACAGCTAGATCTTCTCAGAACAGTGCATCTGATGGTCTTACGTATGTTCCATAGAAGGATCCATCCTGAAAGCTCTATAGCTGCTAGAGAATCGGTCAAGTCCGAGAAATATAAGAAGAAGAATAATTCCAGTGCAGGTAGTGGTTGTAATGAAAATATGATGCTCATGGGGGGAGACAACGGAAGGTTCCCTGACGGGGCAAGGGCAAAGGAGGGGACTGAAAATTGTAAAAAATTCATGAACTTTCCCCAATACAGGCAGAGTGGCAGCGGTTCTAGGAGAAAGGGAGAGCACTGGATCAAAACAGATGCAGAATGTAAGTATCACTTTTATGCATTGCTGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009959 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

411

Amino Acids

45.94

Weight (kDa)

6.59

Isoelectric Point (pI)

49.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14090 AT5G14090
fragaria_vesca	FvH4_4g23460 FvH4_6g53810
malus_domestica	MD09G1008500.v1.1 MD13G1122400.v1.1 MD16G1122900.v1.1 MD17G1002300.v1.1
prunus_persica	Prupe.1G222800_v2.0.a1 Prupe.1G222800_v2.0.a1 Prupe.3G308500_v2.0.a1 Prupe.3G308500_v2.0.a1
pyrus_communis	pycom111g00680 pycom16g10510
rosa_chinensis	RchiOBHm_Chr4g0429831
rosa_laevigata	RLG00000007040 RLG00000022367
rosa_multiflora	Rmu_co8344809.1_g000001 Rmu_sc0006762.1_g000005 Rmu_sc0012106.1_g000002 Rmu_sc0018638.1_g000001 Rmu_sc0018801.1_g000006 Rmu_sc0037594.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076940 Rroxscaffold_5G00371590
rosa_rugosa	Rorug02G0588700 Rorug02G0588800 Rorug04G0238500 Rorug04G0238500 Rorug04G0238500
rosa_samantha	Rh2AG668000 Rh2BG679500 Rh2CG642300 Rh2DG693000 Rh4AG294700 Rh4BG301100 Rh4CG316300 Rh4DG298000
rosa_wichuraiana	Rw2G054760 Rw4G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	666
AarI	CACCTGC	1 cut(s)	187
Acc36I	ACCTGC	2 cut(s)	187, 1010
AciI	CCGC	1 cut(s)	1155
AclWI	GGATC	5 cut(s)	166, 797, 937, 950, 1190
AcsI	RAATTY	2 cut(s)	749, 1118
AcuI	CTGAAG	2 cut(s)	234, 537
AdeI	CACNNNGTG	1 cut(s)	494
AfiI	CCNNNNNNNGG	4 cut(s)	554, 785, 1081, 1140
AflIII	ACRYGT	1 cut(s)	62
AgsI	TTSAA	3 cut(s)	388, 765, 852
AjiI	CACGTC	1 cut(s)	63
Alw21I	GWGCWC	1 cut(s)	1179
Alw26I	GTCTC	3 cut(s)	180, 422, 1053
AlwI	GGATC	5 cut(s)	166, 797, 937, 950, 1190
AlwNI	CAGNNNCTG	1 cut(s)	53
ApeKI	GCWGC	5 cut(s)	47, 172, 539, 965, 1152
ApoI	RAATTY	2 cut(s)	749, 1118
ArsI	GACNNNNNNTTYG	2 cut(s)	16, 48
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	570, 645
AsuHPI	GGTGA	3 cut(s)	265, 803, 842
AsuNHI	GCTAGC	1 cut(s)	476
AvaII	GGWCC	2 cut(s)	570, 645
BamHI	GGATCC	1 cut(s)	942
Bbv12I	GWGCWC	1 cut(s)	1179
BbvI	GCAGC	5 cut(s)	59, 184, 551, 952, 1164
BccI	CCATC	6 cut(s)	24, 112, 254, 821, 910, 954
BcoDI	GTCTC	3 cut(s)	180, 422, 1053
BfaI	CTAG	5 cut(s)	407, 477, 890, 969, 1161
BfmI	CTRYAG	4 cut(s)	537, 783, 884, 960
BfuAI	ACCTGC	2 cut(s)	187, 1010
BglII	AGATCT	3 cut(s)	713, 770, 892
BisI	GCNGC	5 cut(s)	48, 173, 540, 966, 1153
BlpI	GCTNAGC	1 cut(s)	99
BlsI	GCNGC	5 cut(s)	49, 174, 541, 967, 1154
Bme18I	GGWCC	2 cut(s)	570, 645
BmgBI	CACGTC	1 cut(s)	63
BmgT120I	GGNCC	2 cut(s)	570, 645
BmiI	GGNNCC	6 cut(s)	76, 148, 571, 881, 944, 1073
BmsI	GCATC	7 cut(s)	112, 461, 784, 845, 919, 1035, 1183
BmtI	GCTAGC	1 cut(s)	480
BpmI	CTGGAG	1 cut(s)	133
Bpu1102I	GCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	440
BsaAI	YACGTR	1 cut(s)	926
BsaBI	GATNNNNATC	2 cut(s)	157, 163
BsaI	GGTCTC	1 cut(s)	180
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	4 cut(s)	554, 785, 1081, 1140
Bse1I	ACTGG	3 cut(s)	536, 1014, 1184
Bse3DI	GCAATG	2 cut(s)	726, 1220
Bse8I	GATNNNNATC	2 cut(s)	157, 163
BseGI	GGATG	2 cut(s)	164, 946
BseJI	GATNNNNATC	2 cut(s)	157, 163
BseLI	CCNNNNNNNGG	4 cut(s)	554, 785, 1081, 1140
BseMI	GCAATG	2 cut(s)	726, 1220
BseMII	CTCAG	8 cut(s)	45, 113, 264, 306, 368, 417, 505, 913
BseNI	ACTGG	3 cut(s)	536, 1014, 1184
BseRI	GAGGAG	1 cut(s)	701
BseXI	GCAGC	5 cut(s)	59, 184, 551, 952, 1164
BsgI	GTGCAG	2 cut(s)	66, 1038
BsiHKAI	GWGCWC	1 cut(s)	1179
BslFI	GGGAC	2 cut(s)	479, 1114
BslI	CCNNNNNNNGG	4 cut(s)	554, 785, 1081, 1140
BsmAI	GTCTC	3 cut(s)	180, 422, 1053
BsmFI	GGGAC	2 cut(s)	479, 1114
Bso31I	GGTCTC	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	1179
Bsp143I	GATC	7 cut(s)	158, 713, 770, 802, 892, 942, 1182
Bsp1720I	GCTNAGC	1 cut(s)	99
BspACI	CCGC	1 cut(s)	1155
BspCNI	CTCAG	8 cut(s)	46, 112, 263, 305, 367, 418, 504, 912
BspHI	TCATGA	2 cut(s)	729, 1122
BspLI	GGNNCC	6 cut(s)	76, 148, 571, 881, 944, 1073
BspMAI	CTGCAG	1 cut(s)	541
BspMI	ACCTGC	2 cut(s)	187, 1010
BspOI	GCTAGC	1 cut(s)	480
BspPI	GGATC	5 cut(s)	166, 797, 937, 950, 1190
BspTNI	GGTCTC	1 cut(s)	180
BsrDI	GCAATG	2 cut(s)	726, 1220
BsrI	ACTGG	3 cut(s)	536, 1014, 1184
BssMI	GATC	7 cut(s)	158, 713, 770, 802, 892, 942, 1182
Bst4CI	ACNGT	3 cut(s)	28, 470, 907
BstBAI	YACGTR	1 cut(s)	926
BstC8I	GCNNGC	3 cut(s)	40, 478, 500
BstDEI	CTNAG	8 cut(s)	54, 99, 250, 292, 354, 426, 491, 899
BstENI	CCTNNNNNAGG	1 cut(s)	783
BstF5I	GGATG	2 cut(s)	164, 946
BstKTI	GATC	7 cut(s)	161, 716, 773, 805, 895, 945, 1185
BstMAI	GTCTC	3 cut(s)	180, 422, 1053
BstMBI	GATC	7 cut(s)	158, 713, 770, 802, 892, 942, 1182
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 95, 458
BstNSI	RCATGY	1 cut(s)	502
BstSFI	CTRYAG	4 cut(s)	537, 783, 884, 960
BstSNI	TACGTA	1 cut(s)	926
BstV1I	GCAGC	5 cut(s)	59, 184, 551, 952, 1164
BstX2I	RGATCY	5 cut(s)	158, 713, 770, 892, 942
BstYI	RGATCY	5 cut(s)	158, 713, 770, 892, 942
BtrI	CACGTC	1 cut(s)	63
BtsCI	GGATG	2 cut(s)	164, 946
BtsI	GCAGTG	2 cut(s)	49, 623
BtsIMutI	CAGTG	7 cut(s)	49, 51, 499, 623, 912, 1021, 1177
BveI	ACCTGC	2 cut(s)	187, 1010
Cac8I	GCNNGC	3 cut(s)	40, 478, 500
CaiI	CAGNNNCTG	1 cut(s)	53
CciI	TCATGA	2 cut(s)	729, 1122
Cfr13I	GGNCC	2 cut(s)	570, 645
CviAII	CATG	6 cut(s)	263, 499, 730, 755, 1051, 1123
DdeI	CTNAG	8 cut(s)	54, 99, 250, 292, 354, 426, 491, 899
DpnI	GATC	7 cut(s)	160, 715, 772, 804, 894, 944, 1184
DpnII	GATC	7 cut(s)	158, 713, 770, 802, 892, 942, 1182
DraIII	CACNNNGTG	1 cut(s)	494
Eco105I	TACGTA	1 cut(s)	926
Eco31I	GGTCTC	1 cut(s)	180
Eco32I	GATATC	1 cut(s)	560
Eco47I	GGWCC	2 cut(s)	570, 645
Eco57I	CTGAAG	2 cut(s)	234, 537
EcoNI	CCTNNNNNAGG	1 cut(s)	783
EcoO109I	RGGNCCY	1 cut(s)	570
EcoRV	GATATC	1 cut(s)	560
EcoT22I	ATGCAT	1 cut(s)	1222
FaeI	CATG	6 cut(s)	266, 502, 733, 758, 1054, 1126
FalI	AAGNNNNNCTT	4 cut(s)	125, 157, 1196, 1228
FaqI	GGGAC	2 cut(s)	479, 1114
FatI	CATG	6 cut(s)	262, 498, 729, 754, 1050, 1122
Fnu4HI	GCNGC	5 cut(s)	48, 173, 540, 966, 1153
FokI	GGATG	2 cut(s)	151, 933
Fsp4HI	GCNGC	5 cut(s)	48, 173, 540, 966, 1153
FspBI	CTAG	5 cut(s)	407, 477, 890, 969, 1161
GluI	GCNGC	5 cut(s)	48, 173, 540, 966, 1153
GsuI	CTGGAG	1 cut(s)	133
Hin1II	CATG	6 cut(s)	266, 502, 733, 758, 1054, 1126
HinfI	GANTC	5 cut(s)	209, 296, 512, 842, 974
HphI	GGTGA	3 cut(s)	265, 803, 842
Hpy188I	TCNGA	8 cut(s)	214, 253, 295, 517, 841, 902, 915, 988
Hpy188III	TCNNGA	6 cut(s)	150, 419, 730, 817, 950, 1123
Hpy99I	CGWCG	1 cut(s)	337
HpyAV	CCTTC	4 cut(s)	434, 789, 933, 1062
HpyCH4III	ACNGT	3 cut(s)	28, 470, 907
HpyCH4IV	ACGT	2 cut(s)	62, 925
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 95, 458
HpyF3I	CTNAG	8 cut(s)	54, 99, 250, 292, 354, 426, 491, 899
HpySE526I	ACGT	2 cut(s)	62, 925
Hsp92II	CATG	6 cut(s)	266, 502, 733, 758, 1054, 1126
Kzo9I	GATC	7 cut(s)	158, 713, 770, 802, 892, 942, 1182
LmnI	GCTCC	1 cut(s)	152
Lsp1109I	GCAGC	5 cut(s)	59, 184, 551, 952, 1164
LweI	GCATC	7 cut(s)	112, 461, 784, 845, 919, 1035, 1183
MaeI	CTAG	5 cut(s)	407, 477, 890, 969, 1161
MaeII	ACGT	2 cut(s)	62, 925
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	7 cut(s)	160, 715, 772, 804, 894, 944, 1184
MboI	GATC	7 cut(s)	158, 713, 770, 802, 892, 942, 1182
MflI	RGATCY	5 cut(s)	158, 713, 770, 892, 942
MhlI	GDGCHC	1 cut(s)	1179
MluCI	AATT	5 cut(s)	581, 749, 1009, 1108, 1118
MnlI	CCTC	8 cut(s)	361, 415, 502, 583, 595, 679, 826, 1090
Mph1103I	ATGCAT	1 cut(s)	1222
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	350, 744
MslI	CAYNNNNRTG	3 cut(s)	56, 503, 1215
MspA1I	CMGCKG	2 cut(s)	22, 1155
MwoI	GCNNNNNNNGC	3 cut(s)	44, 95, 458
NdeII	GATC	7 cut(s)	158, 713, 770, 802, 892, 942, 1182
NheI	GCTAGC	1 cut(s)	476
NlaIII	CATG	6 cut(s)	266, 502, 733, 758, 1054, 1126
NlaIV	GGNNCC	6 cut(s)	76, 148, 571, 881, 944, 1073
NsiI	ATGCAT	1 cut(s)	1222
NspI	RCATGY	1 cut(s)	502
PaeI	GCATGC	1 cut(s)	502
PagI	TCATGA	2 cut(s)	729, 1122
PaqCI	CACCTGC	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	5 cut(s)	209, 296, 512, 842, 974
PkrI	GCNGC	5 cut(s)	49, 174, 541, 967, 1154
Ppu21I	YACGTR	1 cut(s)	926
PpuMI	RGGWCCY	1 cut(s)	570
PsiI	TTATAA	1 cut(s)	666
Psp5II	RGGWCCY	1 cut(s)	570
PspN4I	GGNNCC	6 cut(s)	76, 148, 571, 881, 944, 1073
PspPI	GGNCC	2 cut(s)	570, 645
PspPPI	RGGWCCY	1 cut(s)	570
PstI	CTGCAG	1 cut(s)	541
PstNI	CAGNNNCTG	1 cut(s)	53
PsuI	RGATCY	5 cut(s)	158, 713, 770, 892, 942
PvuII	CAGCTG	1 cut(s)	22
RseI	CAYNNNNRTG	3 cut(s)	56, 503, 1215
SaqAI	TTAA	2 cut(s)	350, 744
SatI	GCNGC	5 cut(s)	48, 173, 540, 966, 1153
Sau3AI	GATC	7 cut(s)	158, 713, 770, 802, 892, 942, 1182
Sau96I	GGNCC	2 cut(s)	570, 645
SduI	GDGCHC	1 cut(s)	1179
SfaNI	GCATC	7 cut(s)	112, 461, 784, 845, 919, 1035, 1183
SfcI	CTRYAG	4 cut(s)	537, 783, 884, 960
SinI	GGWCC	2 cut(s)	570, 645
SmiMI	CAYNNNNRTG	3 cut(s)	56, 503, 1215
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
SnaBI	TACGTA	1 cut(s)	926
SphI	GCATGC	1 cut(s)	502
Sse9I	AATT	5 cut(s)	581, 749, 1009, 1108, 1118
SsiI	CCGC	1 cut(s)	1155
SspMI	CTAG	5 cut(s)	407, 477, 890, 969, 1161
TaaI	ACNGT	3 cut(s)	28, 470, 907
TaiI	ACGT	2 cut(s)	65, 928
TaqII	GACCGA	1 cut(s)	967
TasI	AATT	5 cut(s)	581, 749, 1009, 1108, 1118
TfiI	GAWTC	5 cut(s)	209, 296, 512, 842, 974
Tru1I	TTAA	2 cut(s)	350, 744
Tru9I	TTAA	2 cut(s)	350, 744
TscAI	CASTG	7 cut(s)	49, 58, 499, 630, 912, 1021, 1184
TseI	GCWGC	5 cut(s)	47, 172, 539, 965, 1152
TspDTI	ATGAA	9 cut(s)	17, 146, 251, 537, 718, 746, 1050, 1111, 1139
TspGWI	ACGGA	2 cut(s)	171, 1080
TspRI	CASTG	7 cut(s)	49, 58, 499, 630, 912, 1021, 1184
VpaK11BI	GGWCC	2 cut(s)	570, 645
XagI	CCTNNNNNAGG	1 cut(s)	783
XapI	RAATTY	2 cut(s)	749, 1118
XceI	RCATGY	1 cut(s)	502
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	5 cut(s)	407, 477, 890, 969, 1161
Zsp2I	ATGCAT	1 cut(s)	1222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.