RchiOBHm_Chr4g0429831

regulation of auxin polar transport

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
54531413 .. 54533878
2466 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39860

Sequence Viewer

Length: 1203 bp
ATGCCTATGCTGCAGTTACTGGGATGGATGCATCGAAAGTTTCGTCAGAATAGTAATGAACCTGTTTTCCTCATTGAGCGTTCTTGTGCATGTCTTGCAGGCCAGCCATCACTCGATGATCAACAATACTATCCAAAGGCAAACTATGGCACTAAACCCTTTAAGCAAGGCCAGAGAGACCATCAGCTTCGAAATTCTTTTGCTGGTCTAGAATCAGCTAAGGTAGATCAAGAAGATTACTATGAAGACGAATCCTCTGCTGCGGCATCTGAGCTCTTCCATGGCTTTCTTGCAATTGGTACCTTTGGCTCAGACCAAGTCATCACCGAGCCATCAACACCAACACTGCCGATGTCTGTCGAGAATATAACTGAAAAAGAGACGGAGGCCACAGAAAATGAATTGAAGCTCATAAATGATGAGTTGGAGAAGGTGCTGGTAGCTGAAGCTAAGGATGAAATTTGCAATGATTCATCTGGAAGGAACAGCCATGTTAGCAACGGAAGAAGTAGTCATGGTAGCACCATTACACTGAGTGGGAAGATGCTAGAAGTCCCAGAGAGCAATGGGATTAACGGAACTACAGTCTGCCCACTCCAGGGATATCTTTTCGGGTCAGCATATGAGTTGTCAGAAACAACAACAGTAGCGAAGAAGGAGCAGAGGACATCTCTTGGTGAGCTGTTTCAGAAGAGTAAATTGACCGAAGAGAATTATTCTGGAGCAAAACTCAGCAAGGAGGAGAAGCGAGCAGATCAGAAGGAAGCTGATAAGTCTTCCATTCATTTGATGAAAAAGAAGCTCATGAAAAAAGTGCTTCACATGAATGCTTCTTCTCGGAGCTCTGCAGCAGCTGCTGATGCTGGCTCAGCAGAAACAAAACTGAATAAGATCCTTCAGATGTTCCACAGAAAAGTTCACCCAGAAAACTCGAATGCTGGGGAAAAATCTGGCAAGTACCAAAAGGGCGAAAAGAAAAAGAGAATGAGCACTGATGGGATTTGCAACCATGGAGATCAGGTCCTCCCAGATGATCAAGACATCATGTTATATCCTGAACAAGTCTTTTCATCAAAACAGAGCATGCGACGCTACAAGAGCCAATCTAACCCGCCCCAGTTTGCACTTGGCGGGCTTGATTCAAATGGGAACAAGGAGCACTGGATCAAAACTGATGCAGACTACCTAGTCCTGGAGCTGTGA
Functional Annotation

Protein Analysis

400

Amino Acids

44.55

Weight (kDa)

6.05

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1187
Acc65I GGTACC 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 299
AciI CCGC 3 cut(s) 263, 1112, 1131
AclWI GGATC 2 cut(s) 886, 1172
AcsI RAATTY 2 cut(s) 193, 459
AcuI CTGAAG 2 cut(s) 465, 881
AdeI CACNNNGTG 1 cut(s) 536
AfaI GTAC 2 cut(s) 301, 959
AfiI CCNNNNNNNGG 3 cut(s) 598, 599, 1192
AgsI TTSAA 2 cut(s) 406, 1143
AjnI CCWGG 2 cut(s) 597, 1191
AloI GAACNNNNNNTCC 2 cut(s) 51, 83
Alw21I GWGCWC 4 cut(s) 276, 845, 992, 1161
Alw26I GTCTC 2 cut(s) 171, 374
AlwI GGATC 2 cut(s) 886, 1172
AlwNI CAGNNNCTG 3 cut(s) 19, 854, 857
AoxI GGCC 3 cut(s) 100, 169, 387
ApeKI GCWGC 5 cut(s) 10, 260, 848, 851, 854
ApoI RAATTY 2 cut(s) 193, 459
ArsI GACNNNNNNTTYG 2 cut(s) 28, 60
Asp718I GGTACC 1 cut(s) 299
AspS9I GGNCC 1 cut(s) 1021
AsuHPI GGTGA 3 cut(s) 316, 689, 911
AsuII TTCGAA 1 cut(s) 190
AvaII GGWCC 1 cut(s) 1021
BanI GGYRCC 1 cut(s) 299
BanII GRGCYC 2 cut(s) 276, 845
BbsI GAAGAC 2 cut(s) 252, 768
Bbv12I GWGCWC 4 cut(s) 276, 845, 992, 1161
BbvI GCAGC 4 cut(s) 247, 841, 860, 863
BccI CCATC 5 cut(s) 18, 115, 189, 340, 989
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BciT130I CCWGG 2 cut(s) 599, 1193
BclI TGATCA 2 cut(s) 118, 1033
BcoDI GTCTC 2 cut(s) 171, 374
BfaI CTAG 3 cut(s) 209, 548, 1187
BfmI CTRYAG 3 cut(s) 11, 582, 846
BisI GCNGC 6 cut(s) 11, 261, 264, 849, 852, 855
BlpI GCTNAGC 1 cut(s) 868
BlsI GCNGC 6 cut(s) 12, 262, 265, 850, 853, 856
Bme1390I CCNGG 2 cut(s) 599, 1193
Bme18I GGWCC 1 cut(s) 1021
BmgT120I GGNCC 1 cut(s) 1021
BmiI GGNNCC 1 cut(s) 301
BmrFI CCNGG 2 cut(s) 599, 1193
BmrI ACTGGG 2 cut(s) 29, 1111
BmsI GCATC 6 cut(s) 18, 40, 275, 534, 850, 1165
BmuI ACTGGG 2 cut(s) 29, 1111
BpiI GAAGAC 2 cut(s) 252, 768
BplI GAGNNNNNCTC 4 cut(s) 655, 687, 714, 746
BpmI CTGGAG 2 cut(s) 581, 741
Bpu10I CCTNAGC 2 cut(s) 219, 450
Bpu1102I GCTNAGC 1 cut(s) 868
Bpu14I TTCGAA 1 cut(s) 190
BsaI GGTCTC 1 cut(s) 171
BsaJI CCNNGG 3 cut(s) 280, 598, 1009
BsaXI ACNNNNNCTCC 2 cut(s) 1005, 1035
Bsc4I CCNNNNNNNGG 3 cut(s) 598, 599, 1192
Bse1I ACTGG 3 cut(s) 24, 1117, 1166
Bse3DI GCAATG 2 cut(s) 472, 571
BseBI CCWGG 2 cut(s) 599, 1193
BseDI CCNNGG 3 cut(s) 280, 598, 1009
BseGI GGATG 3 cut(s) 29, 33, 460
BseLI CCNNNNNNNGG 3 cut(s) 598, 599, 1192
BseMI GCAATG 2 cut(s) 472, 571
BseMII CTCAG 5 cut(s) 261, 324, 524, 745, 882
BseNI ACTGG 3 cut(s) 24, 1117, 1166
BseRI GAGGAG 1 cut(s) 755
BseXI GCAGC 4 cut(s) 247, 841, 860, 863
BseYI CCCAGC 1 cut(s) 938
BshFI GGCC 3 cut(s) 102, 171, 389
BshNI GGYRCC 1 cut(s) 299
BsiHKAI GWGCWC 4 cut(s) 276, 845, 992, 1161
BslFI GGGAC 1 cut(s) 539
BslI CCNNNNNNNGG 3 cut(s) 598, 599, 1192
BsmAI GTCTC 2 cut(s) 171, 374
BsmBI CGTCTC 1 cut(s) 374
BsmFI GGGAC 1 cut(s) 539
BsmI GAATGC 2 cut(s) 832, 940
BsnI GGCC 3 cut(s) 102, 171, 389
Bso31I GGTCTC 1 cut(s) 171
Bsp119I TTCGAA 1 cut(s) 190
Bsp1286I GDGCHC 4 cut(s) 276, 845, 992, 1161
Bsp143I GATC 7 cut(s) 118, 226, 754, 891, 1015, 1033, 1164
Bsp1720I GCTNAGC 1 cut(s) 868
Bsp19I CCATGG 2 cut(s) 280, 1009
BspACI CCGC 3 cut(s) 263, 1112, 1131
BspANI GGCC 3 cut(s) 102, 171, 389
BspCNI CTCAG 5 cut(s) 262, 323, 525, 744, 881
BspHI TCATGA 1 cut(s) 804
BspLI GGNNCC 1 cut(s) 301
BspMAI CTGCAG 2 cut(s) 15, 850
BspPI GGATC 2 cut(s) 886, 1172
BspQI GCTCTTC 1 cut(s) 281
BspT104I TTCGAA 1 cut(s) 190
BspT107I GGYRCC 1 cut(s) 299
BspTNI GGTCTC 1 cut(s) 171
BsrDI GCAATG 2 cut(s) 472, 571
BsrI ACTGG 3 cut(s) 24, 1117, 1166
BssECI CCNNGG 3 cut(s) 280, 598, 1009
BssMI GATC 7 cut(s) 118, 226, 754, 891, 1015, 1033, 1164
BssT1I CCWWGG 2 cut(s) 280, 1009
Bst2UI CCWGG 2 cut(s) 599, 1193
Bst4CI ACNGT 2 cut(s) 586, 646
Bst6I CTCTTC 3 cut(s) 281, 686, 702
BstAPI GCANNNNNTGC 2 cut(s) 95, 854
BstBI TTCGAA 1 cut(s) 190
BstC8I GCNNGC 6 cut(s) 100, 104, 750, 865, 1085, 1133
BstDEI CTNAG 7 cut(s) 219, 270, 310, 450, 533, 731, 868
BstDSI CCRYGG 2 cut(s) 280, 1009
BstF5I GGATG 3 cut(s) 29, 33, 460
BstKTI GATC 7 cut(s) 121, 229, 757, 894, 1018, 1036, 1167
BstMAI GTCTC 2 cut(s) 171, 374
BstMBI GATC 7 cut(s) 118, 226, 754, 891, 1015, 1033, 1164
BstMWI GCNNNNNNNGC 8 cut(s) 10, 95, 495, 854, 860, 869, 1089, 1098
BstNI CCWGG 2 cut(s) 599, 1193
BstNSI RCATGY 2 cut(s) 93, 1087
BstSCI CCNGG 2 cut(s) 597, 1191
BstSFI CTRYAG 3 cut(s) 11, 582, 846
BstV1I GCAGC 4 cut(s) 247, 841, 860, 863
BstV2I GAAGAC 2 cut(s) 252, 768
BstX2I RGATCY 1 cut(s) 891
BstYI RGATCY 1 cut(s) 891
BsuRI GGCC 3 cut(s) 102, 171, 389
BtgI CCRYGG 2 cut(s) 280, 1009
BtsCI GGATG 3 cut(s) 29, 33, 460
BtsI GCAGTG 1 cut(s) 344
BtsIMutI CAGTG 4 cut(s) 344, 530, 990, 1159
Cac8I GCNNGC 6 cut(s) 100, 104, 750, 865, 1085, 1133
CaiI CAGNNNCTG 3 cut(s) 19, 854, 857
CciI TCATGA 1 cut(s) 804
Cfr13I GGNCC 1 cut(s) 1021
CseI GACGC 1 cut(s) 1098
Csp6I GTAC 2 cut(s) 300, 958
CviAII CATG 9 cut(s) 90, 281, 491, 515, 805, 823, 1010, 1045, 1084
CviQI GTAC 2 cut(s) 300, 958
DdeI CTNAG 7 cut(s) 219, 270, 310, 450, 533, 731, 868
DpnI GATC 7 cut(s) 120, 228, 756, 893, 1017, 1035, 1166
DpnII GATC 7 cut(s) 118, 226, 754, 891, 1015, 1033, 1164
DraIII CACNNNGTG 1 cut(s) 536
DrdI GACNNNNNNGTC 1 cut(s) 1187
DseDI GACNNNNNNGTC 1 cut(s) 1187
Eam1104I CTCTTC 3 cut(s) 281, 686, 702
EarI CTCTTC 3 cut(s) 281, 686, 702
Ecl136II GAGCTC 2 cut(s) 274, 843
Eco130I CCWWGG 2 cut(s) 280, 1009
Eco24I GRGCYC 2 cut(s) 276, 845
Eco31I GGTCTC 1 cut(s) 171
Eco32I GATATC 1 cut(s) 605
Eco47I GGWCC 1 cut(s) 1021
Eco53kI GAGCTC 2 cut(s) 274, 843
Eco57I CTGAAG 2 cut(s) 465, 881
EcoICRI GAGCTC 2 cut(s) 274, 843
EcoO109I RGGNCCY 1 cut(s) 1021
EcoRII CCWGG 2 cut(s) 597, 1191
EcoRV GATATC 1 cut(s) 605
EcoT14I CCWWGG 2 cut(s) 280, 1009
EcoT22I ATGCAT 1 cut(s) 33
EcoT38I GRGCYC 2 cut(s) 276, 845
ErhI CCWWGG 2 cut(s) 280, 1009
Esp3I CGTCTC 1 cut(s) 374
FaeI CATG 9 cut(s) 93, 284, 494, 518, 808, 826, 1013, 1048, 1087
FaqI GGGAC 1 cut(s) 539
FatI CATG 9 cut(s) 89, 280, 490, 514, 804, 822, 1009, 1044, 1083
FauI CCCGC 2 cut(s) 1119, 1124
FauNDI CATATG 1 cut(s) 622
FbaI TGATCA 2 cut(s) 118, 1033
Fnu4HI GCNGC 6 cut(s) 11, 261, 264, 849, 852, 855
FokI GGATG 3 cut(s) 36, 40, 467
FriOI GRGCYC 2 cut(s) 276, 845
Fsp4HI GCNGC 6 cut(s) 11, 261, 264, 849, 852, 855
FspBI CTAG 3 cut(s) 209, 548, 1187
GluI GCNGC 6 cut(s) 11, 261, 264, 849, 852, 855
GsaI CCCAGC 1 cut(s) 942
GsuI CTGGAG 2 cut(s) 581, 741
HaeIII GGCC 3 cut(s) 102, 171, 389
HgaI GACGC 1 cut(s) 1098
Hin1II CATG 9 cut(s) 93, 284, 494, 518, 808, 826, 1013, 1048, 1087
HinfI GANTC 4 cut(s) 212, 251, 470, 1139
HphI GGTGA 3 cut(s) 316, 689, 911
Hpy166II GTNNAC 1 cut(s) 919
Hpy188I TCNGA 8 cut(s) 48, 271, 313, 634, 690, 759, 840, 900
Hpy188III TCNNGA 8 cut(s) 209, 230, 361, 477, 720, 805, 1037, 1055
Hpy8I GTNNAC 1 cut(s) 919
Hpy99I CGWCG 1 cut(s) 1092
HpyAV CCTTC 5 cut(s) 424, 474, 649, 754, 905
HpyCH4III ACNGT 2 cut(s) 586, 646
HpyF10VI GCNNNNNNNGC 8 cut(s) 10, 95, 495, 854, 860, 869, 1089, 1098
HpyF3I CTNAG 7 cut(s) 219, 270, 310, 450, 533, 731, 868
Hsp92II CATG 9 cut(s) 93, 284, 494, 518, 808, 826, 1013, 1048, 1087
KpnI GGTACC 1 cut(s) 303
Ksp22I TGATCA 2 cut(s) 118, 1033
Kzo9I GATC 7 cut(s) 118, 226, 754, 891, 1015, 1033, 1164
LguI GCTCTTC 1 cut(s) 281
LmnI GCTCC 5 cut(s) 658, 722, 840, 1156, 1195
Lsp1109I GCAGC 4 cut(s) 247, 841, 860, 863
LweI GCATC 6 cut(s) 18, 40, 275, 534, 850, 1165
MaeI CTAG 3 cut(s) 209, 548, 1187
MaeIII GTNAC 1 cut(s) 15
MalI GATC 7 cut(s) 120, 228, 756, 893, 1017, 1035, 1166
MboI GATC 7 cut(s) 118, 226, 754, 891, 1015, 1033, 1164
MfeI CAATTG 1 cut(s) 294
MflI RGATCY 1 cut(s) 891
MhlI GDGCHC 4 cut(s) 276, 845, 992, 1161
MluCI AATT 6 cut(s) 193, 294, 401, 459, 698, 712
MmeI TCCRAC 1 cut(s) 405
MnlI CCTC 6 cut(s) 80, 265, 379, 657, 733, 1034
Mph1103I ATGCAT 1 cut(s) 33
MseI TTAA 2 cut(s) 162, 573
MslI CAYNNNNRTG 1 cut(s) 825
MspA1I CMGCKG 1 cut(s) 854
MspR9I CCNGG 2 cut(s) 599, 1193
MunI CAATTG 1 cut(s) 294
Mva1269I GAATGC 2 cut(s) 832, 940
MvaI CCWGG 2 cut(s) 599, 1193
MwoI GCNNNNNNNGC 8 cut(s) 10, 95, 495, 854, 860, 869, 1089, 1098
NcoI CCATGG 2 cut(s) 280, 1009
NdeI CATATG 1 cut(s) 622
NdeII GATC 7 cut(s) 118, 226, 754, 891, 1015, 1033, 1164
NlaIII CATG 9 cut(s) 93, 284, 494, 518, 808, 826, 1013, 1048, 1087
NlaIV GGNNCC 1 cut(s) 301
NsiI ATGCAT 1 cut(s) 33
NspI RCATGY 2 cut(s) 93, 1087
NspV TTCGAA 1 cut(s) 190
PaeI GCATGC 1 cut(s) 1087
PagI TCATGA 1 cut(s) 804
PciSI GCTCTTC 1 cut(s) 281
PcsI WCGNNNNNNNCGW 1 cut(s) 40
PctI GAATGC 2 cut(s) 832, 940
PfeI GAWTC 4 cut(s) 212, 251, 470, 1139
PflFI GACNNNGTC 1 cut(s) 317
PfoI TCCNGGA 1 cut(s) 1191
PkrI GCNGC 6 cut(s) 12, 262, 265, 850, 853, 856
PpuMI RGGWCCY 1 cut(s) 1021
Psp124BI GAGCTC 2 cut(s) 276, 845
Psp5II RGGWCCY 1 cut(s) 1021
Psp6I CCWGG 2 cut(s) 597, 1191
PspFI CCCAGC 1 cut(s) 938
PspGI CCWGG 2 cut(s) 597, 1191
PspN4I GGNNCC 1 cut(s) 301
PspPI GGNCC 1 cut(s) 1021
PspPPI RGGWCCY 1 cut(s) 1021
PstI CTGCAG 2 cut(s) 15, 850
PstNI CAGNNNCTG 3 cut(s) 19, 854, 857
PsuI RGATCY 1 cut(s) 891
PsyI GACNNNGTC 1 cut(s) 317
PvuII CAGCTG 1 cut(s) 854
RsaI GTAC 2 cut(s) 301, 959
RsaNI GTAC 2 cut(s) 300, 958
RseI CAYNNNNRTG 1 cut(s) 825
SacI GAGCTC 2 cut(s) 276, 845
SapI GCTCTTC 1 cut(s) 281
SaqAI TTAA 2 cut(s) 162, 573
SatI GCNGC 6 cut(s) 11, 261, 264, 849, 852, 855
Sau3AI GATC 7 cut(s) 118, 226, 754, 891, 1015, 1033, 1164
Sau96I GGNCC 1 cut(s) 1021
ScrFI CCNGG 2 cut(s) 599, 1193
SduI GDGCHC 4 cut(s) 276, 845, 992, 1161
SfaNI GCATC 6 cut(s) 18, 40, 275, 534, 850, 1165
SfcI CTRYAG 3 cut(s) 11, 582, 846
SfuI TTCGAA 1 cut(s) 190
SinI GGWCC 1 cut(s) 1021
SmiMI CAYNNNNRTG 1 cut(s) 825
SphI GCATGC 1 cut(s) 1087
Sse9I AATT 6 cut(s) 193, 294, 401, 459, 698, 712
SsiI CCGC 3 cut(s) 263, 1112, 1131
SspMI CTAG 3 cut(s) 209, 548, 1187
SstI GAGCTC 2 cut(s) 276, 845
StyD4I CCNGG 2 cut(s) 597, 1191
StyI CCWWGG 2 cut(s) 280, 1009
TaaI ACNGT 2 cut(s) 586, 646
TaqI TCGA 5 cut(s) 34, 114, 190, 360, 932
TaqII GACCGA 1 cut(s) 719
TasI AATT 6 cut(s) 193, 294, 401, 459, 698, 712
TauI GCSGC 1 cut(s) 266
TfiI GAWTC 4 cut(s) 212, 251, 470, 1139
Tru1I TTAA 2 cut(s) 162, 573
Tru9I TTAA 2 cut(s) 162, 573
TscAI CASTG 4 cut(s) 351, 537, 997, 1166
TseI GCWGC 5 cut(s) 10, 260, 848, 851, 854
TspGWI ACGGA 3 cut(s) 398, 516, 591
TspRI CASTG 4 cut(s) 351, 537, 997, 1166
Tth111I GACNNNGTC 1 cut(s) 317
VpaK11BI GGWCC 1 cut(s) 1021
XapI RAATTY 2 cut(s) 193, 459
XbaI TCTAGA 1 cut(s) 208
XceI RCATGY 2 cut(s) 93, 1087
XcmI CCANNNNNNNNNTGG 1 cut(s) 1124
XspI CTAG 3 cut(s) 209, 548, 1187
Zsp2I ATGCAT 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.