Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037594.1

Orthogroup ID

OG0002629

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2601

Gene Structure 2601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037594.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1132 bp

atgcatcgaaagtttcgtcagaatagtaatgaacctgttttcctcattggccagccatcactcgatgatcaacaatactatccaaaggcaaactatggcactaaaccctttaagcaaggccagagagaccatcagcttcgaaattcttttgctggtctagaatcagctaaggtagatcaagaagattactatgaagaggaatcctctgctgcggcatctgagctcttccatggctttcttgcaattggtacctttggctcagaccaagtcatcacggagccatcaacaccaacactgccaatgtctgtcgagaatataactgaaaaagagacagaggccacagaaaatgaattgaagctcataaatgatgagttggagaaggtgctggtagctgaagctaaggatgaaatttgcaatgattcatctggaaggaacagccatgttagcaacggaagaagtagtcatggtagcaccattacactgagtgggaagatgctagaagtcccagagagcaatgggattaatggaactacagtctgcccactccagggatatcttttcgggtcagcgtatgagttgtcagaaacaacaacagtagcgaagaaggagcagaggacatctcttggtgagctgtttcagaagagtaagttgaccgaagagaattattctggagcaaaactcagcaaggaggagaagcgagcagatcagaaggaagctgataagtcttccattcatttgatgaaaaagaagctcatgaaaaaagtgcttcacatgaatgcttcttctcggagctctgcagcagctgctgatgctggctcagcagaaacaaaactgaataagatccttcagatgttccacagaaaagttcacccagaaaactcgaatgctggggaaaaatctggcaagtaccaaaagggcgaaaagaaaaagagaatgagcactgatgggatttgcaaccaccgagatcaggtcctcccagatgatcaagacatcatgttatatcctgaacaagtcttttcatcaaaacagagcatgcgacgctacaagagccaatctaacccgccccagtttgcacttggcgggcttgattcaaatgggaacaaggagcactggatcaaaactgatgcagact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0010817 GO:0016020 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0051049 GO:0065007 GO:0065008 GO:0071944 GO:2000012

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

377

Amino Acids

42.03

Weight (kDa)

6.3

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14090 AT5G14090
fragaria_vesca	FvH4_4g23460 FvH4_6g53810
malus_domestica	MD09G1008500.v1.1 MD13G1122400.v1.1 MD16G1122900.v1.1 MD17G1002300.v1.1
prunus_persica	Prupe.1G222800_v2.0.a1 Prupe.1G222800_v2.0.a1 Prupe.3G308500_v2.0.a1 Prupe.3G308500_v2.0.a1
pyrus_communis	pycom111g00680 pycom16g10510
rosa_chinensis	RchiOBHm_Chr4g0429831
rosa_laevigata	RLG00000007040 RLG00000022367
rosa_multiflora	Rmu_co8344809.1_g000001 Rmu_sc0006762.1_g000005 Rmu_sc0012106.1_g000002 Rmu_sc0018638.1_g000001 Rmu_sc0018801.1_g000006 Rmu_sc0037594.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076940 Rroxscaffold_5G00371590
rosa_rugosa	Rorug02G0588700 Rorug02G0588800 Rorug04G0238500 Rorug04G0238500 Rorug04G0238500
rosa_samantha	Rh2AG668000 Rh2BG679500 Rh2CG642300 Rh2DG693000 Rh4AG294700 Rh4BG301100 Rh4CG316300 Rh4DG298000
rosa_wichuraiana	Rw2G054760 Rw4G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	248
AciI	CCGC	3 cut(s)	212, 1061, 1080
AclWI	GGATC	2 cut(s)	835, 1121
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	2 cut(s)	142, 408
AcuI	CTGAAG	2 cut(s)	414, 830
AdeI	CACNNNGTG	1 cut(s)	485
AfaI	GTAC	2 cut(s)	250, 908
AfiI	CCNNNNNNNGG	3 cut(s)	547, 548, 967
AgsI	TTSAA	2 cut(s)	355, 1092
AjnI	CCWGG	1 cut(s)	546
AloI	GAACNNNNNNTCC	2 cut(s)	24, 56
Alw21I	GWGCWC	4 cut(s)	225, 794, 941, 1110
Alw26I	GTCTC	2 cut(s)	120, 323
AlwI	GGATC	2 cut(s)	835, 1121
AlwNI	CAGNNNCTG	2 cut(s)	803, 806
AoxI	GGCC	3 cut(s)	49, 118, 336
ApeKI	GCWGC	4 cut(s)	209, 797, 800, 803
ApoI	RAATTY	2 cut(s)	142, 408
ArsI	GACNNNNNNTTYG	1 cut(s)	33
AseI	ATTAAT	1 cut(s)	522
Asp718I	GGTACC	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	970
AsuHPI	GGTGA	2 cut(s)	638, 860
AsuII	TTCGAA	1 cut(s)	139
AvaII	GGWCC	1 cut(s)	970
BalI	TGGCCA	1 cut(s)	51
BanI	GGYRCC	1 cut(s)	248
BanII	GRGCYC	2 cut(s)	225, 794
BbsI	GAAGAC	1 cut(s)	717
Bbv12I	GWGCWC	4 cut(s)	225, 794, 941, 1110
BbvI	GCAGC	4 cut(s)	196, 790, 809, 812
BccI	CCATC	4 cut(s)	64, 138, 289, 938
BciT130I	CCWGG	1 cut(s)	548
BclI	TGATCA	2 cut(s)	67, 982
BcoDI	GTCTC	2 cut(s)	120, 323
BfaI	CTAG	2 cut(s)	158, 497
BfmI	CTRYAG	2 cut(s)	531, 795
BisI	GCNGC	5 cut(s)	210, 213, 798, 801, 804
BlpI	GCTNAGC	1 cut(s)	817
BlsI	GCNGC	5 cut(s)	211, 214, 799, 802, 805
Bme1390I	CCNGG	1 cut(s)	548
Bme18I	GGWCC	1 cut(s)	970
BmgT120I	GGNCC	1 cut(s)	970
BmiI	GGNNCC	2 cut(s)	250, 279
BmrFI	CCNGG	1 cut(s)	548
BmrI	ACTGGG	1 cut(s)	1060
BmsI	GCATC	5 cut(s)	13, 224, 483, 799, 1114
BmuI	ACTGGG	1 cut(s)	1060
BpiI	GAAGAC	1 cut(s)	717
BplI	GAGNNNNNCTC	6 cut(s)	188, 220, 604, 636, 663, 695
BpmI	CTGGAG	2 cut(s)	530, 690
Bpu10I	CCTNAGC	2 cut(s)	168, 399
Bpu1102I	GCTNAGC	1 cut(s)	817
Bpu14I	TTCGAA	1 cut(s)	139
BsaI	GGTCTC	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	229, 547
Bsc4I	CCNNNNNNNGG	3 cut(s)	547, 548, 967
Bse1I	ACTGG	2 cut(s)	1066, 1115
Bse3DI	GCAATG	2 cut(s)	421, 520
BseBI	CCWGG	1 cut(s)	548
BseDI	CCNNGG	2 cut(s)	229, 547
BseGI	GGATG	1 cut(s)	409
BseLI	CCNNNNNNNGG	3 cut(s)	547, 548, 967
BseMI	GCAATG	2 cut(s)	421, 520
BseMII	CTCAG	5 cut(s)	210, 273, 473, 694, 831
BseNI	ACTGG	2 cut(s)	1066, 1115
BseRI	GAGGAG	1 cut(s)	704
BseXI	GCAGC	4 cut(s)	196, 790, 809, 812
BseYI	CCCAGC	1 cut(s)	887
BshFI	GGCC	3 cut(s)	51, 120, 338
BshNI	GGYRCC	1 cut(s)	248
BsiHKAI	GWGCWC	4 cut(s)	225, 794, 941, 1110
BslFI	GGGAC	1 cut(s)	488
BslI	CCNNNNNNNGG	3 cut(s)	547, 548, 967
BsmAI	GTCTC	2 cut(s)	120, 323
BsmFI	GGGAC	1 cut(s)	488
BsmI	GAATGC	2 cut(s)	781, 889
BsnI	GGCC	3 cut(s)	51, 120, 338
Bso31I	GGTCTC	1 cut(s)	120
Bsp119I	TTCGAA	1 cut(s)	139
Bsp1286I	GDGCHC	4 cut(s)	225, 794, 941, 1110
Bsp143I	GATC	7 cut(s)	67, 175, 703, 840, 964, 982, 1113
Bsp1720I	GCTNAGC	1 cut(s)	817
Bsp19I	CCATGG	1 cut(s)	229
BspACI	CCGC	3 cut(s)	212, 1061, 1080
BspANI	GGCC	3 cut(s)	51, 120, 338
BspCNI	CTCAG	5 cut(s)	211, 272, 474, 693, 830
BspHI	TCATGA	1 cut(s)	753
BspLI	GGNNCC	2 cut(s)	250, 279
BspMAI	CTGCAG	1 cut(s)	799
BspPI	GGATC	2 cut(s)	835, 1121
BspQI	GCTCTTC	1 cut(s)	230
BspT104I	TTCGAA	1 cut(s)	139
BspT107I	GGYRCC	1 cut(s)	248
BspTNI	GGTCTC	1 cut(s)	120
BsrDI	GCAATG	2 cut(s)	421, 520
BsrI	ACTGG	2 cut(s)	1066, 1115
BssECI	CCNNGG	2 cut(s)	229, 547
BssMI	GATC	7 cut(s)	67, 175, 703, 840, 964, 982, 1113
BssT1I	CCWWGG	1 cut(s)	229
Bst2UI	CCWGG	1 cut(s)	548
Bst4CI	ACNGT	2 cut(s)	535, 595
Bst6I	CTCTTC	4 cut(s)	189, 230, 635, 651
BstAPI	GCANNNNNTGC	1 cut(s)	803
BstBI	TTCGAA	1 cut(s)	139
BstC8I	GCNNGC	5 cut(s)	53, 699, 814, 1034, 1082
BstDEI	CTNAG	7 cut(s)	168, 219, 259, 399, 482, 680, 817
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	409
BstKTI	GATC	7 cut(s)	70, 178, 706, 843, 967, 985, 1116
BstMAI	GTCTC	2 cut(s)	120, 323
BstMBI	GATC	7 cut(s)	67, 175, 703, 840, 964, 982, 1113
BstMWI	GCNNNNNNNGC	6 cut(s)	444, 803, 809, 818, 1038, 1047
BstNI	CCWGG	1 cut(s)	548
BstNSI	RCATGY	1 cut(s)	1036
BstSCI	CCNGG	1 cut(s)	546
BstSFI	CTRYAG	2 cut(s)	531, 795
BstV1I	GCAGC	4 cut(s)	196, 790, 809, 812
BstV2I	GAAGAC	1 cut(s)	717
BstX2I	RGATCY	1 cut(s)	840
BstYI	RGATCY	1 cut(s)	840
BsuRI	GGCC	3 cut(s)	51, 120, 338
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	409
BtsI	GCAGTG	1 cut(s)	293
BtsIMutI	CAGTG	4 cut(s)	293, 479, 939, 1108
Cac8I	GCNNGC	5 cut(s)	53, 699, 814, 1034, 1082
CaiI	CAGNNNCTG	2 cut(s)	803, 806
CciI	TCATGA	1 cut(s)	753
Cfr13I	GGNCC	1 cut(s)	970
CseI	GACGC	1 cut(s)	1047
Csp6I	GTAC	2 cut(s)	249, 907
CviAII	CATG	7 cut(s)	230, 440, 464, 754, 772, 994, 1033
CviQI	GTAC	2 cut(s)	249, 907
DdeI	CTNAG	7 cut(s)	168, 219, 259, 399, 482, 680, 817
DpnI	GATC	7 cut(s)	69, 177, 705, 842, 966, 984, 1115
DpnII	GATC	7 cut(s)	67, 175, 703, 840, 964, 982, 1113
DraIII	CACNNNGTG	1 cut(s)	485
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	4 cut(s)	189, 230, 635, 651
EarI	CTCTTC	4 cut(s)	189, 230, 635, 651
Ecl136II	GAGCTC	2 cut(s)	223, 792
Eco130I	CCWWGG	1 cut(s)	229
Eco24I	GRGCYC	2 cut(s)	225, 794
Eco31I	GGTCTC	1 cut(s)	120
Eco32I	GATATC	1 cut(s)	554
Eco47I	GGWCC	1 cut(s)	970
Eco53kI	GAGCTC	2 cut(s)	223, 792
Eco57I	CTGAAG	2 cut(s)	414, 830
EcoICRI	GAGCTC	2 cut(s)	223, 792
EcoO109I	RGGNCCY	1 cut(s)	970
EcoRII	CCWGG	1 cut(s)	546
EcoRV	GATATC	1 cut(s)	554
EcoT14I	CCWWGG	1 cut(s)	229
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	225, 794
ErhI	CCWWGG	1 cut(s)	229
FaeI	CATG	7 cut(s)	233, 443, 467, 757, 775, 997, 1036
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	7 cut(s)	229, 439, 463, 753, 771, 993, 1032
FauI	CCCGC	2 cut(s)	1068, 1073
FbaI	TGATCA	2 cut(s)	67, 982
Fnu4HI	GCNGC	5 cut(s)	210, 213, 798, 801, 804
FokI	GGATG	1 cut(s)	416
FriOI	GRGCYC	2 cut(s)	225, 794
Fsp4HI	GCNGC	5 cut(s)	210, 213, 798, 801, 804
FspBI	CTAG	2 cut(s)	158, 497
GluI	GCNGC	5 cut(s)	210, 213, 798, 801, 804
GsaI	CCCAGC	1 cut(s)	891
GsuI	CTGGAG	2 cut(s)	530, 690
HaeIII	GGCC	3 cut(s)	51, 120, 338
HgaI	GACGC	1 cut(s)	1047
Hin1II	CATG	7 cut(s)	233, 443, 467, 757, 775, 997, 1036
HincII	GTYRAC	1 cut(s)	651
HindII	GTYRAC	1 cut(s)	651
HinfI	GANTC	4 cut(s)	161, 200, 419, 1088
HphI	GGTGA	2 cut(s)	638, 860
Hpy166II	GTNNAC	2 cut(s)	651, 868
Hpy188I	TCNGA	8 cut(s)	21, 220, 262, 583, 639, 708, 789, 849
Hpy188III	TCNNGA	8 cut(s)	158, 179, 310, 426, 669, 754, 986, 1004
Hpy8I	GTNNAC	2 cut(s)	651, 868
Hpy99I	CGWCG	1 cut(s)	1041
HpyAV	CCTTC	5 cut(s)	373, 423, 598, 703, 854
HpyCH4III	ACNGT	2 cut(s)	535, 595
HpyCH4V	TGCA	7 cut(s)	4, 242, 414, 797, 954, 1073, 1127
HpyF10VI	GCNNNNNNNGC	6 cut(s)	444, 803, 809, 818, 1038, 1047
HpyF3I	CTNAG	7 cut(s)	168, 219, 259, 399, 482, 680, 817
Hsp92II	CATG	7 cut(s)	233, 443, 467, 757, 775, 997, 1036
KpnI	GGTACC	1 cut(s)	252
Ksp22I	TGATCA	2 cut(s)	67, 982
Kzo9I	GATC	7 cut(s)	67, 175, 703, 840, 964, 982, 1113
LguI	GCTCTTC	1 cut(s)	230
LmnI	GCTCC	5 cut(s)	277, 607, 671, 789, 1105
Lsp1109I	GCAGC	4 cut(s)	196, 790, 809, 812
LweI	GCATC	5 cut(s)	13, 224, 483, 799, 1114
MaeI	CTAG	2 cut(s)	158, 497
MalI	GATC	7 cut(s)	69, 177, 705, 842, 966, 984, 1115
MboI	GATC	7 cut(s)	67, 175, 703, 840, 964, 982, 1113
MfeI	CAATTG	1 cut(s)	243
MflI	RGATCY	1 cut(s)	840
MhlI	GDGCHC	4 cut(s)	225, 794, 941, 1110
MlsI	TGGCCA	1 cut(s)	51
MluCI	AATT	5 cut(s)	142, 243, 350, 408, 661
MluNI	TGGCCA	1 cut(s)	51
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	7 cut(s)	53, 190, 214, 328, 606, 682, 983
Mox20I	TGGCCA	1 cut(s)	51
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	51
MseI	TTAA	2 cut(s)	111, 522
MslI	CAYNNNNRTG	1 cut(s)	774
Msp20I	TGGCCA	1 cut(s)	51
MspA1I	CMGCKG	1 cut(s)	803
MspR9I	CCNGG	1 cut(s)	548
MunI	CAATTG	1 cut(s)	243
Mva1269I	GAATGC	2 cut(s)	781, 889
MvaI	CCWGG	1 cut(s)	548
MwoI	GCNNNNNNNGC	6 cut(s)	444, 803, 809, 818, 1038, 1047
NcoI	CCATGG	1 cut(s)	229
NdeII	GATC	7 cut(s)	67, 175, 703, 840, 964, 982, 1113
NlaIII	CATG	7 cut(s)	233, 443, 467, 757, 775, 997, 1036
NlaIV	GGNNCC	2 cut(s)	250, 279
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	1036
NspV	TTCGAA	1 cut(s)	139
PaeI	GCATGC	1 cut(s)	1036
PagI	TCATGA	1 cut(s)	753
PciSI	GCTCTTC	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	1 cut(s)	13
PctI	GAATGC	2 cut(s)	781, 889
PfeI	GAWTC	4 cut(s)	161, 200, 419, 1088
PflFI	GACNNNGTC	1 cut(s)	266
PkrI	GCNGC	5 cut(s)	211, 214, 799, 802, 805
PpuMI	RGGWCCY	1 cut(s)	970
PshBI	ATTAAT	1 cut(s)	522
Psp124BI	GAGCTC	2 cut(s)	225, 794
Psp5II	RGGWCCY	1 cut(s)	970
Psp6I	CCWGG	1 cut(s)	546
PspFI	CCCAGC	1 cut(s)	887
PspGI	CCWGG	1 cut(s)	546
PspN4I	GGNNCC	2 cut(s)	250, 279
PspPI	GGNCC	1 cut(s)	970
PspPPI	RGGWCCY	1 cut(s)	970
PstI	CTGCAG	1 cut(s)	799
PstNI	CAGNNNCTG	2 cut(s)	803, 806
PsuI	RGATCY	1 cut(s)	840
PsyI	GACNNNGTC	1 cut(s)	266
PvuII	CAGCTG	1 cut(s)	803
RsaI	GTAC	2 cut(s)	250, 908
RsaNI	GTAC	2 cut(s)	249, 907
RseI	CAYNNNNRTG	1 cut(s)	774
SacI	GAGCTC	2 cut(s)	225, 794
SapI	GCTCTTC	1 cut(s)	230
SaqAI	TTAA	2 cut(s)	111, 522
SatI	GCNGC	5 cut(s)	210, 213, 798, 801, 804
Sau3AI	GATC	7 cut(s)	67, 175, 703, 840, 964, 982, 1113
Sau96I	GGNCC	1 cut(s)	970
ScrFI	CCNGG	1 cut(s)	548
SduI	GDGCHC	4 cut(s)	225, 794, 941, 1110
SfaNI	GCATC	5 cut(s)	13, 224, 483, 799, 1114
SfcI	CTRYAG	2 cut(s)	531, 795
SfuI	TTCGAA	1 cut(s)	139
SinI	GGWCC	1 cut(s)	970
SmiMI	CAYNNNNRTG	1 cut(s)	774
SphI	GCATGC	1 cut(s)	1036
Sse9I	AATT	5 cut(s)	142, 243, 350, 408, 661
SsiI	CCGC	3 cut(s)	212, 1061, 1080
SspMI	CTAG	2 cut(s)	158, 497
SstI	GAGCTC	2 cut(s)	225, 794
StyD4I	CCNGG	1 cut(s)	546
StyI	CCWWGG	1 cut(s)	229
TaaI	ACNGT	2 cut(s)	535, 595
TaqI	TCGA	5 cut(s)	7, 63, 139, 309, 881
TaqII	GACCGA	1 cut(s)	668
TasI	AATT	5 cut(s)	142, 243, 350, 408, 661
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	4 cut(s)	161, 200, 419, 1088
Tru1I	TTAA	2 cut(s)	111, 522
Tru9I	TTAA	2 cut(s)	111, 522
TscAI	CASTG	4 cut(s)	300, 486, 946, 1115
TseI	GCWGC	4 cut(s)	209, 797, 800, 803
TspGWI	ACGGA	2 cut(s)	290, 465
TspRI	CASTG	4 cut(s)	300, 486, 946, 1115
Tth111I	GACNNNGTC	1 cut(s)	266
VpaK11BI	GGWCC	1 cut(s)	970
VspI	ATTAAT	1 cut(s)	522
XapI	RAATTY	2 cut(s)	142, 408
XbaI	TCTAGA	1 cut(s)	157
XceI	RCATGY	1 cut(s)	1036
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1073
XspI	CTAG	2 cut(s)	158, 497
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.