Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002629

Physical Location & Seq

Genomic Coordinates Reverse (-)

9029506 .. 9032392

Gene Structure 2887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1122400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGAAGTTACTAGGTTGGATGCATCGTAAGTTTCGGCAGAATAGCAACGATCCATTTAAAGTTTTCGTCGTTGGGCAGCCATCGCTCGACGATCAACAATACTATCCGAAGCCAAACTGCGGCACGAAACCCTTTAAACAAGCCCCGAGAGATCAGCACGTTCGAAAATCTTTCAACGGTCTAGAAGCAGCTAGGACAGAAGAAGAATACTACGAAGAAGAATCATCTGCTGAAGCATCTGAATACTTCCATGGATTTCTTGCAATCGGTACTCTTGGCAGCTCGGACCAAGTGACCACTGAACCATCAACTCCAACGCTTGGAATCTCTGTGGAGAACATAACCGAAAAAGAAACCGAGGCCACGGAGAACGAGCTGAAGCTCATCAATGATGAATTGGAGAGAGAGTTGGTGGCTGATCCGGCGAAGGATGATATTTGCAATGATTCATCTGGAAGAAACAGCTATGTCAGCAATGGAAGAAGTAGCCATGGAAGCACCATTACGCTTAGTGGGAAGGCGCTGGAAGGCGGAGAGAGCAACGGGATCAATGGAACTGCAGTGTGCCCGCTCCAGGGATATCTTTTCGGGTCGGCATATGAATTGTCTGAAACAACAAGCGTGACAAAGAAGGAACACAGGACATCCCTTGGTGAGCTATTTCAGAGGACTAAATTGGCAGAGGAGATTTCTGGAGCAAAATTAAGCAAGGAGGAGAAGCGAGCAGAGAAGGAAGCGGATAAGTCCGCCATGCACTTGATGAAAAAGATGCTCAAGAAAAAAATGATTCACGCTTCTTCTCGTGGCTCCGGCGGAGCTGCTGATCACGCTTCAGCAGAAACAAAACTCAATAAGATCCTTCACATGTTTCATAGAAAAGTTCACCCTGAAACCTCGGCGGCTCAGCAAAAACCTGGTAAGTACGAAAGGAACCAAACCAAGAAGAAAACCAGCAGTGAGGGGACTTACAGCAATGGAGATCAGGAGGATGATATCATCTTATATCCTCAGCAAGGATTTTCTTCAAATCCGAGCATGCGGCGCTACAAGAGCCAATCAAACCCGCCCCAAATCGCGCTTAGCGGCATGGATTCAAATGATAACAGGGAGCACTGGATCAAAACGGATGCTGACTACCTAGTCTTGGAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0010817 GO:0016020 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0051049 GO:0065007 GO:0065008 GO:0071944 GO:2000012

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

385

Amino Acids

42.77

Weight (kDa)

6.11

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14090 AT5G14090
fragaria_vesca	FvH4_4g23460 FvH4_6g53810
malus_domestica	MD09G1008500.v1.1 MD13G1122400.v1.1 MD16G1122900.v1.1 MD17G1002300.v1.1
prunus_persica	Prupe.1G222800_v2.0.a1 Prupe.1G222800_v2.0.a1 Prupe.3G308500_v2.0.a1 Prupe.3G308500_v2.0.a1
pyrus_communis	pycom111g00680 pycom16g10510
rosa_chinensis	RchiOBHm_Chr4g0429831
rosa_laevigata	RLG00000007040 RLG00000022367
rosa_multiflora	Rmu_co8344809.1_g000001 Rmu_sc0006762.1_g000005 Rmu_sc0012106.1_g000002 Rmu_sc0018638.1_g000001 Rmu_sc0018801.1_g000006 Rmu_sc0037594.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076940 Rroxscaffold_5G00371590
rosa_rugosa	Rorug02G0588700 Rorug02G0588800 Rorug04G0238500 Rorug04G0238500 Rorug04G0238500
rosa_samantha	Rh2AG668000 Rh2BG679500 Rh2CG642300 Rh2DG693000 Rh4AG294700 Rh4BG301100 Rh4CG316300 Rh4DG298000
rosa_wichuraiana	Rw2G054760 Rw4G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1139
AccB7I	CCANNNNNTGG	1 cut(s)	320
AccBSI	CCGCTC	1 cut(s)	571
AccII	CGCG	1 cut(s)	1076
AclWI	GGATC	5 cut(s)	44, 413, 554, 850, 1124
AcuI	CTGAAG	3 cut(s)	252, 398, 816
AfaI	GTAC	2 cut(s)	271, 923
AfiI	CCNNNNNNNGG	6 cut(s)	119, 320, 574, 575, 1013, 1144
AflIII	ACRYGT	1 cut(s)	864
AgsI	TTSAA	3 cut(s)	175, 1026, 1095
AjnI	CCWGG	2 cut(s)	573, 913
AluBI	AGCT	8 cut(s)	191, 282, 376, 382, 465, 658, 818, 1150
AluI	AGCT	8 cut(s)	191, 282, 376, 382, 465, 658, 818, 1150
Alw21I	GWGCWC	1 cut(s)	1113
AlwI	GGATC	5 cut(s)	44, 413, 554, 850, 1124
Ama87I	CYCGRG	1 cut(s)	145
AoxI	GGCC	1 cut(s)	360
ApeKI	GCWGC	4 cut(s)	76, 188, 279, 818
AspLEI	GCGC	3 cut(s)	523, 1044, 1078
AspS9I	GGNCC	1 cut(s)	286
AsuHPI	GGTGA	2 cut(s)	665, 875
AsuII	TTCGAA	1 cut(s)	163
AvaI	CYCGRG	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	286
BaeGI	GKGCMC	1 cut(s)	569
BarI	GAAGNNNNNNTAC	2 cut(s)	487, 519
BauI	CACGAG	1 cut(s)	801
Bbv12I	GWGCWC	1 cut(s)	1113
BbvCI	CCTCAGC	1 cut(s)	1008
BbvI	GCAGC	4 cut(s)	88, 200, 291, 805
BccI	CCATC	2 cut(s)	88, 313
BciT130I	CCWGG	2 cut(s)	575, 915
BclI	TGATCA	1 cut(s)	823
BfaI	CTAG	4 cut(s)	11, 182, 192, 1139
BfmI	CTRYAG	1 cut(s)	558
BfoI	RGCGCY	2 cut(s)	524, 1045
BisI	GCNGC	8 cut(s)	77, 121, 189, 280, 819, 900, 1040, 1084
BlpI	GCTNAGC	2 cut(s)	903, 1079
BlsI	GCNGC	8 cut(s)	78, 122, 190, 281, 820, 901, 1041, 1085
Bme1390I	CCNGG	2 cut(s)	575, 915
Bme18I	GGWCC	1 cut(s)	286
BmeT110I	CYCGRG	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	286
BmiI	GGNNCC	2 cut(s)	808, 932
BmrFI	CCNGG	2 cut(s)	575, 915
BmsI	GCATC	5 cut(s)	9, 31, 245, 759, 1117
BpmI	CTGGAG	2 cut(s)	557, 714
Bpu10I	CCTNAGC	1 cut(s)	1008
Bpu1102I	GCTNAGC	2 cut(s)	903, 1079
Bpu14I	TTCGAA	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	758
BsaJI	CCNNGG	7 cut(s)	250, 357, 363, 490, 574, 649, 894
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bsc4I	CCNNNNNNNGG	6 cut(s)	119, 320, 574, 575, 1013, 1144
Bse1I	ACTGG	1 cut(s)	1118
Bse3DI	GCAATG	3 cut(s)	448, 481, 979
BseBI	CCWGG	2 cut(s)	575, 915
BseDI	CCNNGG	7 cut(s)	250, 357, 363, 490, 574, 649, 894
BseGI	GGATG	5 cut(s)	24, 436, 644, 994, 1132
BseLI	CCNNNNNNNGG	6 cut(s)	119, 320, 574, 575, 1013, 1144
BseMI	GCAATG	3 cut(s)	448, 481, 979
BseMII	CTCAG	2 cut(s)	917, 1022
BseNI	ACTGG	1 cut(s)	1118
BseRI	GAGGAG	2 cut(s)	698, 728
BseSI	GKGCMC	1 cut(s)	569
BseXI	GCAGC	4 cut(s)	88, 200, 291, 805
Bsh1236I	CGCG	1 cut(s)	1076
BshFI	GGCC	1 cut(s)	362
BsiHKAI	GWGCWC	1 cut(s)	1113
BsiHKCI	CYCGRG	1 cut(s)	145
BsiSI	CCGG	2 cut(s)	422, 810
BslFI	GGGAC	1 cut(s)	976
BslI	CCNNNNNNNGG	6 cut(s)	119, 320, 574, 575, 1013, 1144
BsmFI	GGGAC	1 cut(s)	976
BsnI	GGCC	1 cut(s)	362
BsoBI	CYCGRG	1 cut(s)	145
Bsp119I	TTCGAA	1 cut(s)	163
Bsp1286I	GDGCHC	2 cut(s)	569, 1113
Bsp143I	GATC	9 cut(s)	49, 91, 151, 418, 546, 823, 855, 979, 1116
Bsp1720I	GCTNAGC	2 cut(s)	903, 1079
Bsp19I	CCATGG	2 cut(s)	250, 490
BspANI	GGCC	1 cut(s)	362
BspCNI	CTCAG	2 cut(s)	916, 1021
BspFNI	CGCG	1 cut(s)	1076
BspLI	GGNNCC	2 cut(s)	808, 932
BspMAI	CTGCAG	1 cut(s)	562
BspPI	GGATC	5 cut(s)	44, 413, 554, 850, 1124
BspT104I	TTCGAA	1 cut(s)	163
BsrBI	CCGCTC	1 cut(s)	571
BsrDI	GCAATG	3 cut(s)	448, 481, 979
BsrI	ACTGG	1 cut(s)	1118
BssECI	CCNNGG	7 cut(s)	250, 357, 363, 490, 574, 649, 894
BssMI	GATC	9 cut(s)	49, 91, 151, 418, 546, 823, 855, 979, 1116
BssSI	CACGAG	1 cut(s)	801
BssT1I	CCWWGG	3 cut(s)	250, 490, 649
Bst2BI	CACGAG	1 cut(s)	801
Bst2UI	CCWGG	2 cut(s)	575, 915
Bst4CI	ACNGT	1 cut(s)	179
BstBI	TTCGAA	1 cut(s)	163
BstC8I	GCNNGC	3 cut(s)	569, 723, 1037
BstDEI	CTNAG	4 cut(s)	509, 903, 1008, 1079
BstDSI	CCRYGG	3 cut(s)	250, 363, 490
BstENI	CCTNNNNNAGG	1 cut(s)	1011
BstF5I	GGATG	5 cut(s)	24, 436, 644, 994, 1132
BstFNI	CGCG	1 cut(s)	1076
BstH2I	RGCGCY	2 cut(s)	524, 1045
BstHHI	GCGC	3 cut(s)	523, 1044, 1078
BstKTI	GATC	9 cut(s)	52, 94, 154, 421, 549, 826, 858, 982, 1119
BstMBI	GATC	9 cut(s)	49, 91, 151, 418, 546, 823, 855, 979, 1116
BstMWI	GCNNNNNNNGC	8 cut(s)	82, 422, 471, 495, 537, 827, 1041, 1050
BstNI	CCWGG	2 cut(s)	575, 915
BstNSI	RCATGY	2 cut(s)	868, 1039
BstSCI	CCNGG	2 cut(s)	573, 913
BstSFI	CTRYAG	1 cut(s)	558
BstSLI	GKGCMC	1 cut(s)	569
BstUI	CGCG	1 cut(s)	1076
BstV1I	GCAGC	4 cut(s)	88, 200, 291, 805
BstX2I	RGATCY	1 cut(s)	855
BstYI	RGATCY	1 cut(s)	855
BsuRI	GGCC	1 cut(s)	362
BtgI	CCRYGG	3 cut(s)	250, 363, 490
BtgZI	GCGATG	1 cut(s)	66
BtsCI	GGATG	5 cut(s)	24, 436, 644, 994, 1132
BtsI	GCAGTG	2 cut(s)	567, 961
BtsIMutI	CAGTG	4 cut(s)	297, 567, 961, 1111
Cac8I	GCNNGC	3 cut(s)	569, 723, 1037
CfoI	GCGC	3 cut(s)	523, 1044, 1078
Cfr13I	GGNCC	1 cut(s)	286
CsiI	ACCWGGT	1 cut(s)	913
Csp6I	GTAC	2 cut(s)	270, 922
CviAII	CATG	6 cut(s)	251, 491, 751, 865, 1036, 1087
CviQI	GTAC	2 cut(s)	270, 922
DdeI	CTNAG	4 cut(s)	509, 903, 1008, 1079
DpnI	GATC	9 cut(s)	51, 93, 153, 420, 548, 825, 857, 981, 1118
DpnII	GATC	9 cut(s)	49, 91, 151, 418, 546, 823, 855, 979, 1116
DraI	TTTAAA	2 cut(s)	58, 136
DrdI	GACNNNNNNGTC	1 cut(s)	1139
DseDI	GACNNNNNNGTC	1 cut(s)	1139
EciI	GGCGGA	3 cut(s)	546, 736, 828
Eco130I	CCWWGG	3 cut(s)	250, 490, 649
Eco32I	GATATC	2 cut(s)	581, 994
Eco47I	GGWCC	1 cut(s)	286
Eco57I	CTGAAG	3 cut(s)	252, 398, 816
Eco88I	CYCGRG	1 cut(s)	145
EcoNI	CCTNNNNNAGG	1 cut(s)	1011
EcoRII	CCWGG	2 cut(s)	573, 913
EcoRV	GATATC	2 cut(s)	581, 994
EcoT14I	CCWWGG	3 cut(s)	250, 490, 649
EcoT22I	ATGCAT	1 cut(s)	24
ErhI	CCWWGG	3 cut(s)	250, 490, 649
FaeI	CATG	6 cut(s)	254, 494, 754, 868, 1039, 1090
FaqI	GGGAC	1 cut(s)	976
FatI	CATG	6 cut(s)	250, 490, 750, 864, 1035, 1086
FauI	CCCGC	2 cut(s)	576, 1071
FauNDI	CATATG	1 cut(s)	598
FbaI	TGATCA	1 cut(s)	823
Fnu4HI	GCNGC	8 cut(s)	77, 121, 189, 280, 819, 900, 1040, 1084
FokI	GGATG	5 cut(s)	31, 443, 631, 1001, 1139
Fsp4HI	GCNGC	8 cut(s)	77, 121, 189, 280, 819, 900, 1040, 1084
FspBI	CTAG	4 cut(s)	11, 182, 192, 1139
GlaI	GCGC	3 cut(s)	522, 1043, 1077
GluI	GCNGC	8 cut(s)	77, 121, 189, 280, 819, 900, 1040, 1084
GsuI	CTGGAG	2 cut(s)	557, 714
HaeII	RGCGCY	2 cut(s)	524, 1045
HaeIII	GGCC	1 cut(s)	362
HapII	CCGG	2 cut(s)	422, 810
HhaI	GCGC	3 cut(s)	523, 1044, 1078
Hin1II	CATG	6 cut(s)	254, 494, 754, 868, 1039, 1090
Hin6I	GCGC	3 cut(s)	521, 1042, 1076
HinP1I	GCGC	3 cut(s)	521, 1042, 1076
HinfI	GANTC	5 cut(s)	221, 324, 446, 787, 1091
HpaII	CCGG	2 cut(s)	422, 810
HphI	GGTGA	2 cut(s)	665, 875
Hpy166II	GTNNAC	1 cut(s)	883
Hpy188I	TCNGA	6 cut(s)	108, 241, 286, 610, 666, 1032
Hpy188III	TCNNGA	5 cut(s)	182, 453, 693, 775, 983
Hpy8I	GTNNAC	1 cut(s)	883
Hpy99I	CGWCG	2 cut(s)	71, 92
HpyAV	CCTTC	6 cut(s)	421, 511, 521, 625, 724, 869
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	5 cut(s)	22, 263, 441, 560, 754
HpyF10VI	GCNNNNNNNGC	8 cut(s)	82, 422, 471, 495, 537, 827, 1041, 1050
HpyF3I	CTNAG	4 cut(s)	509, 903, 1008, 1079
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	6 cut(s)	254, 494, 754, 868, 1039, 1090
HspAI	GCGC	3 cut(s)	521, 1042, 1076
Ksp22I	TGATCA	1 cut(s)	823
Kzo9I	GATC	9 cut(s)	49, 91, 151, 418, 546, 823, 855, 979, 1116
LmnI	GCTCC	6 cut(s)	576, 695, 812, 815, 1108, 1147
Lsp1109I	GCAGC	4 cut(s)	88, 200, 291, 805
LweI	GCATC	5 cut(s)	9, 31, 245, 759, 1117
MabI	ACCWGGT	1 cut(s)	913
MaeI	CTAG	4 cut(s)	11, 182, 192, 1139
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	3 cut(s)	6, 292, 622
MalI	GATC	9 cut(s)	51, 93, 153, 420, 548, 825, 857, 981, 1118
MbiI	CCGCTC	1 cut(s)	571
MboI	GATC	9 cut(s)	49, 91, 151, 418, 546, 823, 855, 979, 1116
MboII	GAAGA	9 cut(s)	212, 215, 227, 230, 468, 492, 789, 955, 1014
MflI	RGATCY	1 cut(s)	855
MhlI	GDGCHC	2 cut(s)	569, 1113
MluCI	AATT	4 cut(s)	395, 602, 674, 701
MmeI	TCCRAC	1 cut(s)	338
MnlI	CCTC	8 cut(s)	352, 660, 676, 706, 904, 952, 979, 1017
Mph1103I	ATGCAT	1 cut(s)	24
MseI	TTAA	3 cut(s)	57, 135, 704
MspI	CCGG	2 cut(s)	422, 810
MspR9I	CCNGG	2 cut(s)	575, 915
MvaI	CCWGG	2 cut(s)	575, 915
MvnI	CGCG	1 cut(s)	1076
MwoI	GCNNNNNNNGC	8 cut(s)	82, 422, 471, 495, 537, 827, 1041, 1050
NcoI	CCATGG	2 cut(s)	250, 490
NdeI	CATATG	1 cut(s)	598
NdeII	GATC	9 cut(s)	49, 91, 151, 418, 546, 823, 855, 979, 1116
NlaIII	CATG	6 cut(s)	254, 494, 754, 868, 1039, 1090
NlaIV	GGNNCC	2 cut(s)	808, 932
NmeAIII	GCCGAG	1 cut(s)	875
NmuCI	GTSAC	2 cut(s)	292, 622
NsiI	ATGCAT	1 cut(s)	24
NspI	RCATGY	2 cut(s)	868, 1039
NspV	TTCGAA	1 cut(s)	163
PaeI	GCATGC	1 cut(s)	1039
PciI	ACATGT	1 cut(s)	864
PfeI	GAWTC	5 cut(s)	221, 324, 446, 787, 1091
PflMI	CCANNNNNTGG	1 cut(s)	320
PkrI	GCNGC	8 cut(s)	78, 122, 190, 281, 820, 901, 1041, 1085
PscI	ACATGT	1 cut(s)	864
Psp6I	CCWGG	2 cut(s)	573, 913
PspGI	CCWGG	2 cut(s)	573, 913
PspN4I	GGNNCC	2 cut(s)	808, 932
PspPI	GGNCC	1 cut(s)	286
PstI	CTGCAG	1 cut(s)	562
PsuI	RGATCY	1 cut(s)	855
RsaI	GTAC	2 cut(s)	271, 923
RsaNI	GTAC	2 cut(s)	270, 922
SaqAI	TTAA	3 cut(s)	57, 135, 704
SatI	GCNGC	8 cut(s)	77, 121, 189, 280, 819, 900, 1040, 1084
Sau3AI	GATC	9 cut(s)	49, 91, 151, 418, 546, 823, 855, 979, 1116
Sau96I	GGNCC	1 cut(s)	286
ScrFI	CCNGG	2 cut(s)	575, 915
SduI	GDGCHC	2 cut(s)	569, 1113
SexAI	ACCWGGT	1 cut(s)	913
SfaNI	GCATC	5 cut(s)	9, 31, 245, 759, 1117
SfcI	CTRYAG	1 cut(s)	558
SfuI	TTCGAA	1 cut(s)	163
SinI	GGWCC	1 cut(s)	286
SmlI	CTYRAG	1 cut(s)	773
SmoI	CTYRAG	1 cut(s)	773
SphI	GCATGC	1 cut(s)	1039
Sse9I	AATT	4 cut(s)	395, 602, 674, 701
SspMI	CTAG	4 cut(s)	11, 182, 192, 1139
StyD4I	CCNGG	2 cut(s)	573, 913
StyI	CCWWGG	3 cut(s)	250, 490, 649
TaaI	ACNGT	1 cut(s)	179
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	2 cut(s)	87, 163
TasI	AATT	4 cut(s)	395, 602, 674, 701
TauI	GCSGC	4 cut(s)	123, 902, 1042, 1086
TfiI	GAWTC	5 cut(s)	221, 324, 446, 787, 1091
Tru1I	TTAA	3 cut(s)	57, 135, 704
Tru9I	TTAA	3 cut(s)	57, 135, 704
TscAI	CASTG	4 cut(s)	304, 567, 961, 1118
TseFI	GTSAC	2 cut(s)	292, 622
TseI	GCWGC	4 cut(s)	76, 188, 279, 818
Tsp45I	GTSAC	2 cut(s)	292, 622
TspDTI	ATGAA	6 cut(s)	17, 408, 438, 615, 776, 860
TspGWI	ACGGA	2 cut(s)	380, 1139
TspRI	CASTG	4 cut(s)	304, 567, 961, 1118
Van91I	CCANNNNNTGG	1 cut(s)	320
VpaK11BI	GGWCC	1 cut(s)	286
XagI	CCTNNNNNAGG	1 cut(s)	1011
XbaI	TCTAGA	1 cut(s)	181
XceI	RCATGY	2 cut(s)	868, 1039
XspI	CTAG	4 cut(s)	11, 182, 192, 1139
Zsp2I	ATGCAT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.