Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002629

Physical Location & Seq

Genomic Coordinates Reverse (-)

81227299 .. 81230313

Gene Structure 3015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG642300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGAAGTTGTTACAATGGGTGCACCAAAAATTTCAGCACAGTAGCATTGAACCTCTCAAGGATCTCAGTATTGCTCAGCCATCAGATGATGACCAAGATGCCTATACAAAGCCAACCATCCGTTACAGATATGGATCTACATTCCTAGAGCCACCTAGGAAGGACCAAAAGAAATCTTTTTCTGAATCTGAAGACAGGAGAGAAGAAGAAACATCTGCTATTGTCTCAGAGCTGTTTCATGGCTTTCTCACCATTGGAACTCTTGGCTCGGAAACAAGTGCCAATGAACCAGCAACACCAACGTTTGCAACACCTTTAGAGAACCTAACTGAGAGAAAAACAGAGGTCACAGAAAATGACTTGAAGCTCATCAACTATGAGCTAGAGAGGTTTCTTGAGGCTGAGACAAGGGAAGATCCATCATCAGCGAGGAACAGTCATGTTAGCAGTATTACACTCAGTGGCATGCAAATGGAGGACTCTGAAGGTGAAGAGTACTGTGCAGCAACAGTGGTATGTCCCCTCCAAGGATATCTGCTTGGGTCCTCAGTTGAATTGCCAGAAATGAGAACAGAAGCAAAGAAAGAAAAGGCATCACTACAAGAGCTGTTTGATAGGACAAAAGTGACTGAAAATTTCGAGAAAAGTGAGGAGAAAGATCCCAAGCAAAAACGTAAATCTGCCGTGGATTCCATGAAGAAGATAATAAAAAAACTCTATGCTTCTTCCAAGAGCTCCACTTCTACTAGCGGTCATTCAAATGATCCTGTTTCCATCATGAAGAAACTTGGTGAGGCATCTGATTCTGTTTCAACCAAGAAGAAACCCCATCAGGTTTTATGTATGTTTCAAAGAAGGATTCATCCTGAAGGCTCTATTGCTGAAAAAGAATTTATCAAGTCCAAGAAATACAAGGACAAGAGCAACTCCAGTAACATTGGTGGTTGTAATAGGAATCTGATACTCATGGGTGCAGAGAACAGAAGGTTACCCCATGAGTCAAAGTTTAAGGAAGGGACCAAACAAAGTAAGAAGTACATGGACTGGCCTCAATACAGGCTGAATGGCAGTGATTTGAGAAGAAATGAAGAGCACTGGATCAAAACAGATGCAGACTATACCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009959 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

375

Amino Acids

42.82

Weight (kDa)

6.79

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14090 AT5G14090
fragaria_vesca	FvH4_4g23460 FvH4_6g53810
malus_domestica	MD09G1008500.v1.1 MD13G1122400.v1.1 MD16G1122900.v1.1 MD17G1002300.v1.1
prunus_persica	Prupe.1G222800_v2.0.a1 Prupe.1G222800_v2.0.a1 Prupe.3G308500_v2.0.a1 Prupe.3G308500_v2.0.a1
pyrus_communis	pycom111g00680 pycom16g10510
rosa_chinensis	RchiOBHm_Chr4g0429831
rosa_laevigata	RLG00000007040 RLG00000022367
rosa_multiflora	Rmu_co8344809.1_g000001 Rmu_sc0006762.1_g000005 Rmu_sc0012106.1_g000002 Rmu_sc0018638.1_g000001 Rmu_sc0018801.1_g000006 Rmu_sc0037594.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076940 Rroxscaffold_5G00371590
rosa_rugosa	Rorug02G0588700 Rorug02G0588800 Rorug04G0238500 Rorug04G0238500 Rorug04G0238500
rosa_samantha	Rh2AG668000 Rh2BG679500 Rh2CG642300 Rh2DG693000 Rh4AG294700 Rh4BG301100 Rh4CG316300 Rh4DG298000
rosa_wichuraiana	Rw2G054760 Rw4G025500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	750
AclI	AACGTT	1 cut(s)	302
AclWI	GGATC	6 cut(s)	69, 142, 410, 653, 758, 1106
AcsI	RAATTY	3 cut(s)	29, 634, 890
AcuI	CTGAAG	3 cut(s)	210, 504, 888
AdeI	CACNNNGTG	1 cut(s)	461
AfaI	GTAC	2 cut(s)	497, 1037
AfiI	CCNNNNNNNGG	1 cut(s)	527
AgsI	TTSAA	6 cut(s)	50, 364, 554, 759, 813, 851
AluBI	AGCT	5 cut(s)	232, 367, 382, 607, 735
AluI	AGCT	5 cut(s)	232, 367, 382, 607, 735
Alw21I	GWGCWC	3 cut(s)	24, 737, 1095
Alw26I	GTCTC	2 cut(s)	229, 398
Alw44I	GTGCAC	1 cut(s)	20
AlwI	GGATC	6 cut(s)	69, 142, 410, 653, 758, 1106
AoxI	GGCC	1 cut(s)	1046
ApaLI	GTGCAC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	503
ApoI	RAATTY	3 cut(s)	29, 634, 890
AspA2I	CCTAGG	1 cut(s)	155
AspS9I	GGNCC	3 cut(s)	163, 543, 1017
AsuHPI	GGTGA	3 cut(s)	241, 500, 803
AvaII	GGWCC	3 cut(s)	163, 543, 1017
AvrII	CCTAGG	1 cut(s)	155
BaeGI	GKGCMC	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	737
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	3 cut(s)	24, 737, 1095
BbvI	GCAGC	1 cut(s)	515
BccI	CCATC	5 cut(s)	88, 125, 427, 782, 837
BceAI	ACGGC	1 cut(s)	668
BcoDI	GTCTC	2 cut(s)	229, 398
BfaI	CTAG	4 cut(s)	146, 156, 383, 747
BisI	GCNGC	1 cut(s)	504
BlnI	CCTAGG	1 cut(s)	155
BlpI	GCTNAGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	505
BmcAI	AGTACT	1 cut(s)	497
Bme18I	GGWCC	3 cut(s)	163, 543, 1017
BmgT120I	GGNCC	3 cut(s)	163, 543, 1017
BmiI	GGNNCC	2 cut(s)	544, 1018
BmsI	GCATC	4 cut(s)	88, 602, 806, 1099
BpiI	GAAGAC	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	913
Bpu1102I	GCTNAGC	1 cut(s)	75
BpuEI	CTTGAG	2 cut(s)	41, 416
BsaBI	GATNNNNATC	1 cut(s)	133
BsaJI	CCNNGG	3 cut(s)	155, 526, 684
Bsc4I	CCNNNNNNNGG	1 cut(s)	527
Bse1I	ACTGG	3 cut(s)	930, 1049, 1100
Bse8I	GATNNNNATC	1 cut(s)	133
BseDI	CCNNGG	3 cut(s)	155, 526, 684
BseGI	GGATG	2 cut(s)	117, 862
BseJI	GATNNNNATC	1 cut(s)	133
BseLI	CCNNNNNNNGG	1 cut(s)	527
BseMII	CTCAG	7 cut(s)	79, 89, 240, 321, 393, 472, 561
BseNI	ACTGG	3 cut(s)	930, 1049, 1100
BseRI	GAGGAG	1 cut(s)	665
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	515
BsgI	GTGCAG	2 cut(s)	522, 993
BshFI	GGCC	1 cut(s)	1048
BsiHKAI	GWGCWC	3 cut(s)	24, 737, 1095
BslFI	GGGAC	2 cut(s)	504, 1030
BslI	CCNNNNNNNGG	1 cut(s)	527
BsmAI	GTCTC	2 cut(s)	229, 398
BsmFI	GGGAC	2 cut(s)	504, 1030
BsnI	GGCC	1 cut(s)	1048
Bsp1286I	GDGCHC	3 cut(s)	24, 737, 1095
Bsp143I	GATC	6 cut(s)	61, 134, 415, 658, 763, 1098
Bsp1720I	GCTNAGC	1 cut(s)	75
BspACI	CCGC	1 cut(s)	750
BspANI	GGCC	1 cut(s)	1048
BspCNI	CTCAG	7 cut(s)	78, 88, 239, 322, 394, 471, 560
BspHI	TCATGA	1 cut(s)	777
BspLI	GGNNCC	2 cut(s)	544, 1018
BspPI	GGATC	6 cut(s)	69, 142, 410, 653, 758, 1106
BspQI	GCTCTTC	1 cut(s)	1083
BsrI	ACTGG	3 cut(s)	930, 1049, 1100
BssECI	CCNNGG	3 cut(s)	155, 526, 684
BssMI	GATC	6 cut(s)	61, 134, 415, 658, 763, 1098
BssT1I	CCWWGG	2 cut(s)	155, 526
Bst4CI	ACNGT	4 cut(s)	41, 437, 500, 511
Bst6I	CTCTTC	2 cut(s)	486, 1083
BstC8I	GCNNGC	1 cut(s)	467
BstDEI	CTNAG	7 cut(s)	65, 75, 226, 330, 402, 458, 547
BstDSI	CCRYGG	1 cut(s)	684
BstEII	GGTNACC	1 cut(s)	987
BstF5I	GGATG	2 cut(s)	117, 862
BstKTI	GATC	6 cut(s)	64, 137, 418, 661, 766, 1101
BstMAI	GTCTC	2 cut(s)	229, 398
BstMBI	GATC	6 cut(s)	61, 134, 415, 658, 763, 1098
BstNSI	RCATGY	1 cut(s)	469
BstPI	GGTNACC	1 cut(s)	987
BstSLI	GKGCMC	1 cut(s)	24
BstV1I	GCAGC	1 cut(s)	515
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	4 cut(s)	61, 134, 415, 658
BstYI	RGATCY	4 cut(s)	61, 134, 415, 658
BsuRI	GGCC	1 cut(s)	1048
BtgI	CCRYGG	1 cut(s)	684
BtsCI	GGATG	2 cut(s)	117, 862
BtsI	GCAGTG	1 cut(s)	1075
BtsIMutI	CAGTG	4 cut(s)	466, 516, 1075, 1093
Cac8I	GCNNGC	1 cut(s)	467
CciI	TCATGA	1 cut(s)	777
Cfr13I	GGNCC	3 cut(s)	163, 543, 1017
Csp6I	GTAC	2 cut(s)	496, 1036
CviAII	CATG	9 cut(s)	239, 440, 466, 694, 778, 967, 995, 1039, 1123
CviQI	GTAC	2 cut(s)	496, 1036
DdeI	CTNAG	7 cut(s)	65, 75, 226, 330, 402, 458, 547
DpnI	GATC	6 cut(s)	63, 136, 417, 660, 765, 1100
DpnII	GATC	6 cut(s)	61, 134, 415, 658, 763, 1098
DraIII	CACNNNGTG	1 cut(s)	461
Eam1104I	CTCTTC	2 cut(s)	486, 1083
EarI	CTCTTC	2 cut(s)	486, 1083
Ecl136II	GAGCTC	1 cut(s)	735
Eco130I	CCWWGG	2 cut(s)	155, 526
Eco24I	GRGCYC	1 cut(s)	737
Eco32I	GATATC	1 cut(s)	533
Eco47I	GGWCC	3 cut(s)	163, 543, 1017
Eco53kI	GAGCTC	1 cut(s)	735
Eco57I	CTGAAG	3 cut(s)	210, 504, 888
Eco91I	GGTNACC	1 cut(s)	987
EcoICRI	GAGCTC	1 cut(s)	735
EcoO109I	RGGNCCY	1 cut(s)	543
EcoO65I	GGTNACC	1 cut(s)	987
EcoRV	GATATC	1 cut(s)	533
EcoT14I	CCWWGG	2 cut(s)	155, 526
EcoT38I	GRGCYC	1 cut(s)	737
ErhI	CCWWGG	2 cut(s)	155, 526
FaeI	CATG	9 cut(s)	242, 443, 469, 697, 781, 970, 998, 1042, 1126
FaqI	GGGAC	2 cut(s)	504, 1030
FatI	CATG	9 cut(s)	238, 439, 465, 693, 777, 966, 994, 1038, 1122
Fnu4HI	GCNGC	1 cut(s)	504
FokI	GGATG	2 cut(s)	104, 849
FriOI	GRGCYC	1 cut(s)	737
Fsp4HI	GCNGC	1 cut(s)	504
FspBI	CTAG	4 cut(s)	146, 156, 383, 747
GluI	GCNGC	1 cut(s)	504
GsuI	CTGGAG	1 cut(s)	913
HaeIII	GGCC	1 cut(s)	1048
Hin1II	CATG	9 cut(s)	242, 443, 469, 697, 781, 970, 998, 1042, 1126
HinfI	GANTC	7 cut(s)	185, 479, 689, 803, 859, 955, 998
HphI	GGTGA	3 cut(s)	241, 500, 803
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	8 cut(s)	85, 184, 190, 229, 271, 484, 802, 960
Hpy188III	TCNNGA	4 cut(s)	395, 640, 778, 866
Hpy8I	GTNNAC	1 cut(s)	22
HpyAV	CCTTC	6 cut(s)	154, 479, 849, 863, 978, 1007
HpyCH4III	ACNGT	4 cut(s)	41, 437, 500, 511
HpyCH4IV	ACGT	2 cut(s)	302, 673
HpyCH4V	TGCA	6 cut(s)	22, 308, 469, 503, 974, 1112
HpyF3I	CTNAG	7 cut(s)	65, 75, 226, 330, 402, 458, 547
HpySE526I	ACGT	2 cut(s)	302, 673
Hsp92II	CATG	9 cut(s)	242, 443, 469, 697, 781, 970, 998, 1042, 1126
Kzo9I	GATC	6 cut(s)	61, 134, 415, 658, 763, 1098
LguI	GCTCTTC	1 cut(s)	1083
LmnI	GCTCC	1 cut(s)	740
Lsp1109I	GCAGC	1 cut(s)	515
LweI	GCATC	4 cut(s)	88, 602, 806, 1099
MaeI	CTAG	4 cut(s)	146, 156, 383, 747
MaeII	ACGT	2 cut(s)	302, 673
MaeIII	GTNAC	6 cut(s)	9, 122, 346, 625, 932, 987
MalI	GATC	6 cut(s)	63, 136, 417, 660, 765, 1100
MboI	GATC	6 cut(s)	61, 134, 415, 658, 763, 1098
MflI	RGATCY	4 cut(s)	61, 134, 415, 658
MhlI	GDGCHC	3 cut(s)	24, 737, 1095
MluCI	AATT	4 cut(s)	29, 554, 634, 890
MlyI	GAGTC	2 cut(s)	473, 1007
MseI	TTAA	1 cut(s)	1008
MslI	CAYNNNNRTG	2 cut(s)	470, 759
NdeII	GATC	6 cut(s)	61, 134, 415, 658, 763, 1098
NlaIII	CATG	9 cut(s)	242, 443, 469, 697, 781, 970, 998, 1042, 1126
NlaIV	GGNNCC	2 cut(s)	544, 1018
NmuCI	GTSAC	2 cut(s)	346, 625
NspI	RCATGY	1 cut(s)	469
PaeI	GCATGC	1 cut(s)	469
PagI	TCATGA	1 cut(s)	777
PciSI	GCTCTTC	1 cut(s)	1083
PfeI	GAWTC	5 cut(s)	185, 689, 803, 859, 955
PkrI	GCNGC	1 cut(s)	505
PleI	GAGTC	2 cut(s)	473, 1006
PpsI	GAGTC	2 cut(s)	473, 1006
PpuMI	RGGWCCY	1 cut(s)	543
Psp124BI	GAGCTC	1 cut(s)	737
Psp1406I	AACGTT	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	543
PspEI	GGTNACC	1 cut(s)	987
PspN4I	GGNNCC	2 cut(s)	544, 1018
PspPI	GGNCC	3 cut(s)	163, 543, 1017
PspPPI	RGGWCCY	1 cut(s)	543
PsuI	RGATCY	4 cut(s)	61, 134, 415, 658
RsaI	GTAC	2 cut(s)	497, 1037
RsaNI	GTAC	2 cut(s)	496, 1036
RseI	CAYNNNNRTG	2 cut(s)	470, 759
SacI	GAGCTC	1 cut(s)	737
SapI	GCTCTTC	1 cut(s)	1083
SaqAI	TTAA	1 cut(s)	1008
SatI	GCNGC	1 cut(s)	504
Sau3AI	GATC	6 cut(s)	61, 134, 415, 658, 763, 1098
Sau96I	GGNCC	3 cut(s)	163, 543, 1017
ScaI	AGTACT	1 cut(s)	497
SchI	GAGTC	2 cut(s)	473, 1007
SduI	GDGCHC	3 cut(s)	24, 737, 1095
SfaNI	GCATC	4 cut(s)	88, 602, 806, 1099
SinI	GGWCC	3 cut(s)	163, 543, 1017
SmiMI	CAYNNNNRTG	2 cut(s)	470, 759
SmlI	CTYRAG	2 cut(s)	56, 395
SmoI	CTYRAG	2 cut(s)	56, 395
SphI	GCATGC	1 cut(s)	469
Sse9I	AATT	4 cut(s)	29, 554, 634, 890
SsiI	CCGC	1 cut(s)	750
SspMI	CTAG	4 cut(s)	146, 156, 383, 747
SstI	GAGCTC	1 cut(s)	737
StyI	CCWWGG	2 cut(s)	155, 526
TaaI	ACNGT	4 cut(s)	41, 437, 500, 511
TaiI	ACGT	2 cut(s)	305, 676
TaqI	TCGA	1 cut(s)	639
TasI	AATT	4 cut(s)	29, 554, 634, 890
TatI	WGTACW	2 cut(s)	495, 1035
TfiI	GAWTC	5 cut(s)	185, 689, 803, 859, 955
Tru1I	TTAA	1 cut(s)	1008
Tru9I	TTAA	1 cut(s)	1008
TscAI	CASTG	4 cut(s)	466, 516, 1075, 1100
TseFI	GTSAC	2 cut(s)	346, 625
TseI	GCWGC	1 cut(s)	503
Tsp45I	GTSAC	2 cut(s)	346, 625
TspDTI	ATGAA	7 cut(s)	17, 227, 300, 710, 794, 851, 1101
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	4 cut(s)	466, 516, 1075, 1100
VneI	GTGCAC	1 cut(s)	20
VpaK11BI	GGWCC	3 cut(s)	163, 543, 1017
XapI	RAATTY	3 cut(s)	29, 634, 890
XceI	RCATGY	1 cut(s)	469
XmaJI	CCTAGG	1 cut(s)	155
XspI	CTAG	4 cut(s)	146, 156, 383, 747
ZrmI	AGTACT	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.