Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016211

Physical Location & Seq

Genomic Coordinates Forward (+)

39378491 .. 39381142

Gene Structure 2652 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g53800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTCGAGCTCAGTTTTGGCTCTGAACCCCTTTTCAGTCTCGACACCGCTCCAACCGGCAACCTCAATCGCCTCCAAATCGCGTTCCAGTTTGAAGTTCCGGAAATCTCAACCTGTGAAATTCAAATGTGATTACTCATGCTTCGAAGTCAAAGATGTGAGCTACCAACCGCCAGGGACTGAGCTCCGCCTTCTAAATGCTGTTAGTTTTTCGCTTCCGGAGAAGAGCTTGGGCTTAATTTTTGGACAGAGTGGTAGCGGAAAGACTACTCTCGTGCAGCTGCTTGCAGGATTGAACAAACCAACTTCAGGCTCAATTCAGATTCAAAAATATGGAAATGATGGCAAGCCAATTCAGTCTCCTGAATCCTTATCCACAGGACGAGTTGGCATTGTGTTTCAGTTTCCAGAGAGGTATTTCGTGGCTGATAATGTGCTTGATGAAGTTACTTTTGCATGGCCAAGGCAAAAGGGAGATCTTCAAATGAAGGAGAATCTTGCTCGAAACCTCCACAGAGCAATTAATTGGGTTGGTTTAAGTGGGATCTCACTGGATAGAGACCCTCACTCCCTTAGTGGTGGCTACAAACGTCGTCTTGCCTTGGCAATTCAGCTAGTACAAATCCCAGATTTATTGATATTGGATGAACCCCTTGCTGGTCTTGATTGGAAGGCACGTGCAGATGTTGTAAAGCTGCTAAAGCATCTAAAGAAAGAATTAACCATACTGGTTGTCAGCCATGATCTCAAAGAGTTAGCAGCTCTAGTTGATCGATCATGGAGGATGGATATGGGTGGAATTCTTAAGGAGGAGCCTCTGCCGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

276

Amino Acids

30.36

Weight (kDa)

9.43

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	65 - 219	3.9e-25	ABC transporter
SMC_N	PF02463	74 - 252	1.2e-06	RecF/RecN/SMC N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14100
fragaria_vesca	FvH4_6g53800
malus_domestica	MD17G1001700.v1.1
prunus_persica	Prupe.3G308400_v2.0.a1
pyrus_communis	pycom17g00710
rosa_chinensis	RchiOBHm_Chr2g0175931
rosa_laevigata	RLG00000022366
rosa_roxburghii	Rroxscaffold_2G00076920
rosa_rugosa	Rorug02G0588700 Rorug02G0588700
rosa_samantha	Rh2AG667900 Rh2BG679400 Rh2CG642200 Rh2DG692900
rosa_wichuraiana	Rw2G054750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	49
AccII	CGCG	1 cut(s)	82
AccIII	TCCGGA	2 cut(s)	99, 217
AciI	CCGC	4 cut(s)	47, 170, 187, 258
AclWI	GGATC	1 cut(s)	551
AcoI	YGGCCR	1 cut(s)	458
AcsI	RAATTY	2 cut(s)	119, 798
AcuI	CTGAAG	1 cut(s)	291
AcvI	CACGTG	1 cut(s)	677
AfaI	GTAC	1 cut(s)	618
AfiI	CCNNNNNNNGG	2 cut(s)	308, 656
AflII	CTTAAG	1 cut(s)	803
AgsI	TTSAA	5 cut(s)	94, 124, 295, 326, 482
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	8 cut(s)	9, 162, 184, 228, 280, 613, 694, 761
AluI	AGCT	8 cut(s)	9, 162, 184, 228, 280, 613, 694, 761
Alw21I	GWGCWC	2 cut(s)	11, 186
Alw26I	GTCTC	3 cut(s)	43, 363, 552
AlwI	GGATC	1 cut(s)	551
AlwNI	CAGNNNCTG	1 cut(s)	179
Aor13HI	TCCGGA	2 cut(s)	99, 217
AoxI	GGCC	1 cut(s)	458
ApeKI	GCWGC	4 cut(s)	277, 280, 694, 758
ApoI	RAATTY	2 cut(s)	119, 798
AseI	ATTAAT	1 cut(s)	522
AsuII	TTCGAA	1 cut(s)	144
BalI	TGGCCA	1 cut(s)	460
BanII	GRGCYC	2 cut(s)	11, 186
BauI	CACGAG	1 cut(s)	272
BbrPI	CACGTG	1 cut(s)	677
Bbv12I	GWGCWC	2 cut(s)	11, 186
BbvI	GCAGC	4 cut(s)	267, 289, 681, 770
BccI	CCATC	2 cut(s)	335, 778
BciT130I	CCWGG	1 cut(s)	174
BcoDI	GTCTC	3 cut(s)	43, 363, 552
BfaI	CTAG	2 cut(s)	614, 764
BfrI	CTTAAG	1 cut(s)	803
BglII	AGATCT	1 cut(s)	475
BisI	GCNGC	4 cut(s)	278, 281, 695, 759
BlsI	GCNGC	4 cut(s)	279, 282, 696, 760
Bme1390I	CCNGG	1 cut(s)	174
BmiI	GGNNCC	1 cut(s)	813
BmrFI	CCNGG	1 cut(s)	174
BmsI	GCATC	1 cut(s)	712
Bpu14I	TTCGAA	1 cut(s)	144
Bsa29I	ATCGAT	1 cut(s)	772
BsaAI	YACGTR	1 cut(s)	677
BsaI	GGTCTC	1 cut(s)	552
BsaJI	CCNNGG	3 cut(s)	173, 461, 600
BsaWI	WCCGGW	2 cut(s)	99, 217
BsaXI	ACNNNNNCTCC	2 cut(s)	551, 581
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 656
Bse118I	RCCGGY	1 cut(s)	55
Bse1I	ACTGG	3 cut(s)	87, 555, 732
BseAI	TCCGGA	2 cut(s)	99, 217
BseBI	CCWGG	1 cut(s)	174
BseCI	ATCGAT	1 cut(s)	772
BseDI	CCNNGG	3 cut(s)	173, 461, 600
BseGI	GGATG	2 cut(s)	649, 789
BseLI	CCNNNNNNNGG	2 cut(s)	308, 656
BseMII	CTCAG	2 cut(s)	24, 171
BseNI	ACTGG	3 cut(s)	87, 555, 732
BseRI	GAGGAG	1 cut(s)	824
BseXI	GCAGC	4 cut(s)	267, 289, 681, 770
BsgI	GTGCAG	2 cut(s)	296, 699
Bsh1236I	CGCG	1 cut(s)	82
BshFI	GGCC	1 cut(s)	460
BshVI	ATCGAT	1 cut(s)	772
BsiHKAI	GWGCWC	2 cut(s)	11, 186
BsiSI	CCGG	3 cut(s)	56, 100, 218
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	2 cut(s)	308, 656
BsmAI	GTCTC	3 cut(s)	43, 363, 552
BsmFI	GGGAC	1 cut(s)	190
BsnI	GGCC	1 cut(s)	460
Bso31I	GGTCTC	1 cut(s)	552
Bsp119I	TTCGAA	1 cut(s)	144
Bsp1286I	GDGCHC	2 cut(s)	11, 186
Bsp13I	TCCGGA	2 cut(s)	99, 217
Bsp143I	GATC	5 cut(s)	475, 543, 742, 769, 773
BspACI	CCGC	4 cut(s)	47, 170, 187, 258
BspANI	GGCC	1 cut(s)	460
BspCNI	CTCAG	2 cut(s)	23, 172
BspDI	ATCGAT	1 cut(s)	772
BspEI	TCCGGA	2 cut(s)	99, 217
BspFNI	CGCG	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	813
BspPI	GGATC	1 cut(s)	551
BspQI	GCTCTTC	1 cut(s)	218
BspT104I	TTCGAA	1 cut(s)	144
BspTI	CTTAAG	1 cut(s)	803
BspTNI	GGTCTC	1 cut(s)	552
BsrBI	CCGCTC	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	55
BsrI	ACTGG	3 cut(s)	87, 555, 732
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	3 cut(s)	173, 461, 600
BssMI	GATC	5 cut(s)	475, 543, 742, 769, 773
BssSI	CACGAG	1 cut(s)	272
BssT1I	CCWWGG	2 cut(s)	461, 600
Bst2BI	CACGAG	1 cut(s)	272
Bst2UI	CCWGG	1 cut(s)	174
Bst6I	CTCTTC	1 cut(s)	218
BstAFI	CTTAAG	1 cut(s)	803
BstBAI	YACGTR	1 cut(s)	677
BstBI	TTCGAA	1 cut(s)	144
BstC8I	GCNNGC	2 cut(s)	285, 347
BstDEI	CTNAG	3 cut(s)	10, 180, 572
BstF5I	GGATG	2 cut(s)	649, 789
BstFNI	CGCG	1 cut(s)	82
BstKTI	GATC	5 cut(s)	478, 546, 745, 772, 776
BstMAI	GTCTC	3 cut(s)	43, 363, 552
BstMBI	GATC	5 cut(s)	475, 543, 742, 769, 773
BstMWI	GCNNNNNNNGC	1 cut(s)	700
BstNI	CCWGG	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	172
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	4 cut(s)	267, 289, 681, 770
BstX2I	RGATCY	2 cut(s)	475, 543
BstYI	RGATCY	2 cut(s)	475, 543
Bsu15I	ATCGAT	1 cut(s)	772
BsuRI	GGCC	1 cut(s)	460
BsuTUI	ATCGAT	1 cut(s)	772
BtsCI	GGATG	2 cut(s)	649, 789
BtsIMutI	CAGTG	1 cut(s)	548
Cac8I	GCNNGC	2 cut(s)	285, 347
CaiI	CAGNNNCTG	1 cut(s)	179
Cfr10I	RCCGGY	1 cut(s)	55
ClaI	ATCGAT	1 cut(s)	772
Csp6I	GTAC	1 cut(s)	617
CviAII	CATG	4 cut(s)	138, 456, 740, 777
CviQI	GTAC	1 cut(s)	617
DdeI	CTNAG	3 cut(s)	10, 180, 572
DpnI	GATC	5 cut(s)	477, 545, 744, 771, 775
DpnII	GATC	5 cut(s)	475, 543, 742, 769, 773
EaeI	YGGCCR	1 cut(s)	458
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
EciI	GGCGGA	1 cut(s)	176
Ecl136II	GAGCTC	2 cut(s)	9, 184
Eco130I	CCWWGG	2 cut(s)	461, 600
Eco24I	GRGCYC	2 cut(s)	11, 186
Eco31I	GGTCTC	1 cut(s)	552
Eco53kI	GAGCTC	2 cut(s)	9, 184
Eco57I	CTGAAG	1 cut(s)	291
Eco72I	CACGTG	1 cut(s)	677
EcoICRI	GAGCTC	2 cut(s)	9, 184
EcoRI	GAATTC	1 cut(s)	798
EcoRII	CCWGG	1 cut(s)	172
EcoT14I	CCWWGG	2 cut(s)	461, 600
EcoT38I	GRGCYC	2 cut(s)	11, 186
ErhI	CCWWGG	2 cut(s)	461, 600
FaeI	CATG	4 cut(s)	141, 459, 743, 780
FaiI	YATR	7 cut(s)	139, 333, 457, 725, 741, 778, 791
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	4 cut(s)	137, 455, 739, 776
Fnu4HI	GCNGC	4 cut(s)	278, 281, 695, 759
FokI	GGATG	2 cut(s)	656, 796
FriOI	GRGCYC	2 cut(s)	11, 186
Fsp4HI	GCNGC	4 cut(s)	278, 281, 695, 759
FspBI	CTAG	2 cut(s)	614, 764
GluI	GCNGC	4 cut(s)	278, 281, 695, 759
HaeIII	GGCC	1 cut(s)	460
HapII	CCGG	3 cut(s)	56, 100, 218
Hin1II	CATG	4 cut(s)	141, 459, 743, 780
HinfI	GANTC	3 cut(s)	322, 365, 493
HpaII	CCGG	3 cut(s)	56, 100, 218
Hpy188I	TCNGA	2 cut(s)	24, 321
Hpy188III	TCNNGA	6 cut(s)	40, 100, 218, 362, 407, 662
Hpy99I	CGWCG	1 cut(s)	594
HpyAV	CCTTC	3 cut(s)	200, 481, 664
HpyCH4IV	ACGT	2 cut(s)	589, 676
HpyCH4V	TGCA	4 cut(s)	277, 287, 455, 680
HpyF10VI	GCNNNNNNNGC	1 cut(s)	700
HpyF3I	CTNAG	3 cut(s)	10, 180, 572
HpySE526I	ACGT	2 cut(s)	589, 676
Hsp92II	CATG	4 cut(s)	141, 459, 743, 780
Kpn2I	TCCGGA	2 cut(s)	99, 217
Kzo9I	GATC	5 cut(s)	475, 543, 742, 769, 773
LguI	GCTCTTC	1 cut(s)	218
LmnI	GCTCC	3 cut(s)	54, 189, 811
Lsp1109I	GCAGC	4 cut(s)	267, 289, 681, 770
LweI	GCATC	1 cut(s)	712
MaeI	CTAG	2 cut(s)	614, 764
MaeII	ACGT	2 cut(s)	589, 676
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	5 cut(s)	477, 545, 744, 771, 775
MbiI	CCGCTC	1 cut(s)	49
MboI	GATC	5 cut(s)	475, 543, 742, 769, 773
MboII	GAAGA	2 cut(s)	235, 470
MflI	RGATCY	2 cut(s)	475, 543
MhlI	GDGCHC	2 cut(s)	11, 186
MlsI	TGGCCA	1 cut(s)	460
MluCI	AATT	9 cut(s)	119, 237, 315, 351, 519, 523, 606, 716, 798
MluNI	TGGCCA	1 cut(s)	460
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	8 cut(s)	73, 82, 405, 518, 573, 774, 802, 825
Mox20I	TGGCCA	1 cut(s)	460
MroI	TCCGGA	2 cut(s)	99, 217
MscI	TGGCCA	1 cut(s)	460
MseI	TTAA	5 cut(s)	236, 522, 536, 719, 804
Msp20I	TGGCCA	1 cut(s)	460
MspA1I	CMGCKG	1 cut(s)	280
MspCI	CTTAAG	1 cut(s)	803
MspI	CCGG	3 cut(s)	56, 100, 218
MspR9I	CCNGG	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	174
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	1 cut(s)	700
NdeII	GATC	5 cut(s)	475, 543, 742, 769, 773
NlaIII	CATG	4 cut(s)	141, 459, 743, 780
NlaIV	GGNNCC	1 cut(s)	813
NspV	TTCGAA	1 cut(s)	144
PciSI	GCTCTTC	1 cut(s)	218
PfeI	GAWTC	3 cut(s)	322, 365, 493
PkrI	GCNGC	4 cut(s)	279, 282, 696, 760
PmaCI	CACGTG	1 cut(s)	677
PmlI	CACGTG	1 cut(s)	677
Ppu21I	YACGTR	1 cut(s)	677
PshBI	ATTAAT	1 cut(s)	522
Psp124BI	GAGCTC	2 cut(s)	11, 186
Psp6I	CCWGG	1 cut(s)	172
PspCI	CACGTG	1 cut(s)	677
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	813
PstNI	CAGNNNCTG	1 cut(s)	179
PsuI	RGATCY	2 cut(s)	475, 543
PvuII	CAGCTG	1 cut(s)	280
RsaI	GTAC	1 cut(s)	618
RsaNI	GTAC	1 cut(s)	617
SacI	GAGCTC	2 cut(s)	11, 186
SapI	GCTCTTC	1 cut(s)	218
SaqAI	TTAA	5 cut(s)	236, 522, 536, 719, 804
SatI	GCNGC	4 cut(s)	278, 281, 695, 759
Sau3AI	GATC	5 cut(s)	475, 543, 742, 769, 773
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	2 cut(s)	11, 186
SfaNI	GCATC	1 cut(s)	712
SfuI	TTCGAA	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	803
SmoI	CTYRAG	1 cut(s)	803
Sse9I	AATT	9 cut(s)	119, 237, 315, 351, 519, 523, 606, 716, 798
SsiI	CCGC	4 cut(s)	47, 170, 187, 258
SspMI	CTAG	2 cut(s)	614, 764
SstI	GAGCTC	2 cut(s)	11, 186
StyD4I	CCNGG	1 cut(s)	172
StyI	CCWWGG	2 cut(s)	461, 600
TaiI	ACGT	2 cut(s)	592, 679
TaqI	TCGA	5 cut(s)	5, 41, 144, 502, 772
TasI	AATT	9 cut(s)	119, 237, 315, 351, 519, 523, 606, 716, 798
TatI	WGTACW	1 cut(s)	616
TfiI	GAWTC	3 cut(s)	322, 365, 493
Tru1I	TTAA	5 cut(s)	236, 522, 536, 719, 804
Tru9I	TTAA	5 cut(s)	236, 522, 536, 719, 804
TscAI	CASTG	1 cut(s)	555
TseI	GCWGC	4 cut(s)	277, 280, 694, 758
TspDTI	ATGAA	3 cut(s)	456, 500, 660
TspRI	CASTG	1 cut(s)	555
Vha464I	CTTAAG	1 cut(s)	803
VspI	ATTAAT	1 cut(s)	522
XapI	RAATTY	2 cut(s)	119, 798
XspI	CTAG	2 cut(s)	614, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.