Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0016211

Physical Location & Seq

Genomic Coordinates Forward (+)

88942934 .. 88945524

Gene Structure 2591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG679400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCGAGCTCAGTTTTGGCTTTGGAGCCCTTTTCAGGCTGCAGACCGCTCCAACCGGCTGCCTCAATCGCACCCAAATCGCCTTCAAGTCTGAGGTTCCGGAAATCTCAACCTGTGAAATTCAAATGCGATTACTCCTGCTTTGAAGTCAGAGATGTGAGCTACCAACCGCCAGGGACCGAGCTCAGCCTTCTAAATGCTGTTAGTTTTTCGCTTCCGGAGAAGAGCTTTGGCTTGATTTTTGGGAGGAGTGGTAGCGGAAAGACTACTCTTGTGCAGCTGCTTGCAGGTTTAAATAAACCGACTTCAGGTTCAATTCAGATTCAAAAATATGGAAATGATGGCAAGCCGATTCGGTCTCCGGAATCCTTATCCACAGGAAGAGTTGGCATTGTATTTCAGTTTCCAGAGAGGTATTTCGTGGCAGATAATGTGTTTGATGAAGTTACTTTTGGGTGGCCAAGGCAAAAGGGAGATCTTCAAATGAAGGAGAATCTTGCTCGAAACCTCCACAGAGCGATTAATTGGGTTGGTTTAAGTGGGATCTCACTGGATAGAGATCCTTACTCCCTTAGTGGTGGCTACAAACGTCGTCTTGCCTTGGCAATTCAACTGGTACAAATCCCAGATTTATTGATATTGGATGAACCTCTTGCTGGTCTTGATTGGAAGGCACGTGCAGATGTTGTGAAGCTACTAAAGCATCTAAAGAAAGAATTAACCATACTTGTTGTCAGCCATGATCTCAAAGAGTTAGCAGCTTTAGTTGATCATTCTTGGAGGATGGATATGGGTGGCATTCTTAAGGAGGAGCCTCTGCCAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

275

Amino Acids

30.42

Weight (kDa)

9.28

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	65 - 219	7.5e-25	ABC transporter
SMC_N	PF02463	74 - 252	1.6e-06	RecF/RecN/SMC N terminal domain
AAA_21	PF13304	186 - 251	9.7e-06	AAA domain, putative AbiEii toxin, Type IV TA system

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14100
fragaria_vesca	FvH4_6g53800
malus_domestica	MD17G1001700.v1.1
prunus_persica	Prupe.3G308400_v2.0.a1
pyrus_communis	pycom17g00710
rosa_chinensis	RchiOBHm_Chr2g0175931
rosa_laevigata	RLG00000022366
rosa_roxburghii	Rroxscaffold_2G00076920
rosa_rugosa	Rorug02G0588700 Rorug02G0588700
rosa_samantha	Rh2AG667900 Rh2BG679400 Rh2CG642200 Rh2DG692900
rosa_wichuraiana	Rw2G054750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	278
AccBSI	CCGCTC	1 cut(s)	49
AccIII	TCCGGA	3 cut(s)	99, 217, 361
AciI	CCGC	3 cut(s)	47, 170, 258
AclWI	GGATC	2 cut(s)	551, 554
AcoI	YGGCCR	1 cut(s)	458
AcsI	RAATTY	1 cut(s)	119
AcuI	CTGAAG	1 cut(s)	291
AcvI	CACGTG	1 cut(s)	677
AfaI	GTAC	1 cut(s)	618
AfiI	CCNNNNNNNGG	3 cut(s)	35, 308, 656
AflII	CTTAAG	1 cut(s)	803
AgsI	TTSAA	7 cut(s)	87, 124, 146, 315, 326, 482, 611
AjnI	CCWGG	1 cut(s)	172
AjuI	GAANNNNNNNTTGG	2 cut(s)	435, 467
AluBI	AGCT	7 cut(s)	9, 162, 184, 228, 280, 694, 761
AluI	AGCT	7 cut(s)	9, 162, 184, 228, 280, 694, 761
Alw21I	GWGCWC	2 cut(s)	11, 186
Alw26I	GTCTC	1 cut(s)	363
AlwI	GGATC	2 cut(s)	551, 554
Aor13HI	TCCGGA	3 cut(s)	99, 217, 361
AoxI	GGCC	1 cut(s)	458
ApeKI	GCWGC	5 cut(s)	39, 59, 277, 280, 758
ApoI	RAATTY	1 cut(s)	119
AseI	ATTAAT	1 cut(s)	522
AspS9I	GGNCC	1 cut(s)	177
AvaII	GGWCC	1 cut(s)	177
BalI	TGGCCA	1 cut(s)	460
BanII	GRGCYC	3 cut(s)	11, 30, 186
BbrPI	CACGTG	1 cut(s)	677
Bbv12I	GWGCWC	2 cut(s)	11, 186
BbvI	GCAGC	5 cut(s)	26, 46, 267, 289, 770
BccI	CCATC	2 cut(s)	335, 778
BcgI	CGANNNNNNTGC	2 cut(s)	60, 94
BciT130I	CCWGG	1 cut(s)	174
BclI	TGATCA	1 cut(s)	769
BcoDI	GTCTC	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	40
BfrI	CTTAAG	1 cut(s)	803
BfuAI	ACCTGC	1 cut(s)	278
BglII	AGATCT	1 cut(s)	475
BisI	GCNGC	5 cut(s)	40, 60, 278, 281, 759
BlpI	GCTNAGC	1 cut(s)	185
BlsI	GCNGC	5 cut(s)	41, 61, 279, 282, 760
Bme1390I	CCNGG	1 cut(s)	174
Bme18I	GGWCC	1 cut(s)	177
BmgT120I	GGNCC	1 cut(s)	177
BmiI	GGNNCC	4 cut(s)	27, 98, 178, 813
BmrFI	CCNGG	1 cut(s)	174
BmsI	GCATC	1 cut(s)	712
Bpu1102I	GCTNAGC	1 cut(s)	185
BsaAI	YACGTR	1 cut(s)	677
BsaBI	GATNNNNATC	1 cut(s)	558
BsaI	GGTCTC	1 cut(s)	363
BsaJI	CCNNGG	3 cut(s)	173, 461, 600
BsaWI	WCCGGW	3 cut(s)	99, 217, 361
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 308, 656
Bse118I	RCCGGY	1 cut(s)	55
Bse1I	ACTGG	2 cut(s)	555, 618
Bse8I	GATNNNNATC	1 cut(s)	558
BseAI	TCCGGA	3 cut(s)	99, 217, 361
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	3 cut(s)	173, 461, 600
BseGI	GGATG	2 cut(s)	649, 789
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	3 cut(s)	35, 308, 656
BseMII	CTCAG	3 cut(s)	24, 83, 199
BseNI	ACTGG	2 cut(s)	555, 618
BseRI	GAGGAG	2 cut(s)	262, 824
BseXI	GCAGC	5 cut(s)	26, 46, 267, 289, 770
BsgI	GTGCAG	2 cut(s)	296, 699
BshFI	GGCC	1 cut(s)	460
BsiHKAI	GWGCWC	2 cut(s)	11, 186
BsiSI	CCGG	4 cut(s)	56, 100, 218, 362
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	3 cut(s)	35, 308, 656
BsmAI	GTCTC	1 cut(s)	363
BsmFI	GGGAC	1 cut(s)	190
BsmI	GAATGC	1 cut(s)	798
BsnI	GGCC	1 cut(s)	460
Bso31I	GGTCTC	1 cut(s)	363
Bsp1286I	GDGCHC	3 cut(s)	11, 30, 186
Bsp13I	TCCGGA	3 cut(s)	99, 217, 361
Bsp143I	GATC	5 cut(s)	475, 543, 559, 742, 769
Bsp1720I	GCTNAGC	1 cut(s)	185
BspACI	CCGC	3 cut(s)	47, 170, 258
BspANI	GGCC	1 cut(s)	460
BspCNI	CTCAG	3 cut(s)	23, 84, 198
BspEI	TCCGGA	3 cut(s)	99, 217, 361
BspLI	GGNNCC	4 cut(s)	27, 98, 178, 813
BspMAI	CTGCAG	1 cut(s)	44
BspMI	ACCTGC	1 cut(s)	278
BspPI	GGATC	2 cut(s)	551, 554
BspQI	GCTCTTC	1 cut(s)	218
BspTI	CTTAAG	1 cut(s)	803
BspTNI	GGTCTC	1 cut(s)	363
BsrBI	CCGCTC	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	55
BsrI	ACTGG	2 cut(s)	555, 618
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	3 cut(s)	173, 461, 600
BssMI	GATC	5 cut(s)	475, 543, 559, 742, 769
BssT1I	CCWWGG	2 cut(s)	461, 600
Bst2UI	CCWGG	1 cut(s)	174
Bst6I	CTCTTC	2 cut(s)	218, 376
BstAFI	CTTAAG	1 cut(s)	803
BstBAI	YACGTR	1 cut(s)	677
BstC8I	GCNNGC	3 cut(s)	7, 285, 347
BstDEI	CTNAG	4 cut(s)	10, 92, 185, 572
BstF5I	GGATG	2 cut(s)	649, 789
BstKTI	GATC	5 cut(s)	478, 546, 562, 745, 772
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	5 cut(s)	475, 543, 559, 742, 769
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 700
BstNI	CCWGG	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	172
BstSFI	CTRYAG	1 cut(s)	40
BstV1I	GCAGC	5 cut(s)	26, 46, 267, 289, 770
BstX2I	RGATCY	3 cut(s)	475, 543, 559
BstYI	RGATCY	3 cut(s)	475, 543, 559
BsuRI	GGCC	1 cut(s)	460
BtsCI	GGATG	2 cut(s)	649, 789
BtsIMutI	CAGTG	1 cut(s)	548
BveI	ACCTGC	1 cut(s)	278
Cac8I	GCNNGC	3 cut(s)	7, 285, 347
Cfr10I	RCCGGY	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	617
CviAII	CATG	1 cut(s)	740
CviQI	GTAC	1 cut(s)	617
DdeI	CTNAG	4 cut(s)	10, 92, 185, 572
DpnI	GATC	5 cut(s)	477, 545, 561, 744, 771
DpnII	GATC	5 cut(s)	475, 543, 559, 742, 769
DraI	TTTAAA	1 cut(s)	294
EaeI	YGGCCR	1 cut(s)	458
Eam1104I	CTCTTC	2 cut(s)	218, 376
EarI	CTCTTC	2 cut(s)	218, 376
Ecl136II	GAGCTC	2 cut(s)	9, 184
Eco130I	CCWWGG	2 cut(s)	461, 600
Eco24I	GRGCYC	3 cut(s)	11, 30, 186
Eco31I	GGTCTC	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	177
Eco53kI	GAGCTC	2 cut(s)	9, 184
Eco57I	CTGAAG	1 cut(s)	291
Eco72I	CACGTG	1 cut(s)	677
EcoICRI	GAGCTC	2 cut(s)	9, 184
EcoRII	CCWGG	1 cut(s)	172
EcoT14I	CCWWGG	2 cut(s)	461, 600
EcoT38I	GRGCYC	3 cut(s)	11, 30, 186
ErhI	CCWWGG	2 cut(s)	461, 600
FaeI	CATG	1 cut(s)	743
FaiI	YATR	4 cut(s)	333, 725, 741, 791
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	1 cut(s)	739
FbaI	TGATCA	1 cut(s)	769
Fnu4HI	GCNGC	5 cut(s)	40, 60, 278, 281, 759
FokI	GGATG	2 cut(s)	656, 796
FriOI	GRGCYC	3 cut(s)	11, 30, 186
Fsp4HI	GCNGC	5 cut(s)	40, 60, 278, 281, 759
GluI	GCNGC	5 cut(s)	40, 60, 278, 281, 759
HaeIII	GGCC	1 cut(s)	460
HapII	CCGG	4 cut(s)	56, 100, 218, 362
Hin1II	CATG	1 cut(s)	743
HinfI	GANTC	4 cut(s)	322, 352, 365, 493
HpaII	CCGG	4 cut(s)	56, 100, 218, 362
Hpy188I	TCNGA	3 cut(s)	93, 152, 321
Hpy188III	TCNNGA	5 cut(s)	100, 218, 362, 407, 662
Hpy99I	CGWCG	1 cut(s)	594
HpyAV	CCTTC	4 cut(s)	93, 200, 481, 664
HpyCH4IV	ACGT	2 cut(s)	589, 676
HpyCH4V	TGCA	4 cut(s)	42, 277, 287, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 700
HpyF3I	CTNAG	4 cut(s)	10, 92, 185, 572
HpySE526I	ACGT	2 cut(s)	589, 676
Hsp92II	CATG	1 cut(s)	743
Kpn2I	TCCGGA	3 cut(s)	99, 217, 361
Ksp22I	TGATCA	1 cut(s)	769
Kzo9I	GATC	5 cut(s)	475, 543, 559, 742, 769
LguI	GCTCTTC	1 cut(s)	218
LmnI	GCTCC	3 cut(s)	25, 54, 811
Lsp1109I	GCAGC	5 cut(s)	26, 46, 267, 289, 770
LweI	GCATC	1 cut(s)	712
MaeII	ACGT	2 cut(s)	589, 676
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	5 cut(s)	477, 545, 561, 744, 771
MbiI	CCGCTC	1 cut(s)	49
MboI	GATC	5 cut(s)	475, 543, 559, 742, 769
MboII	GAAGA	3 cut(s)	235, 393, 470
MflI	RGATCY	3 cut(s)	475, 543, 559
MhlI	GDGCHC	3 cut(s)	11, 30, 186
MlsI	TGGCCA	1 cut(s)	460
MluCI	AATT	6 cut(s)	119, 315, 523, 606, 716, 822
MluNI	TGGCCA	1 cut(s)	460
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	9 cut(s)	73, 87, 240, 405, 518, 660, 774, 802, 825
Mox20I	TGGCCA	1 cut(s)	460
MroI	TCCGGA	3 cut(s)	99, 217, 361
MscI	TGGCCA	1 cut(s)	460
MseI	TTAA	6 cut(s)	293, 522, 536, 719, 804, 826
Msp20I	TGGCCA	1 cut(s)	460
MspA1I	CMGCKG	1 cut(s)	280
MspCI	CTTAAG	1 cut(s)	803
MspI	CCGG	4 cut(s)	56, 100, 218, 362
MspR9I	CCNGG	1 cut(s)	174
Mva1269I	GAATGC	1 cut(s)	798
MvaI	CCWGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	2 cut(s)	68, 700
NdeII	GATC	5 cut(s)	475, 543, 559, 742, 769
NlaIII	CATG	1 cut(s)	743
NlaIV	GGNNCC	4 cut(s)	27, 98, 178, 813
PciSI	GCTCTTC	1 cut(s)	218
PctI	GAATGC	1 cut(s)	798
PfeI	GAWTC	4 cut(s)	322, 352, 365, 493
PkrI	GCNGC	5 cut(s)	41, 61, 279, 282, 760
PmaCI	CACGTG	1 cut(s)	677
PmlI	CACGTG	1 cut(s)	677
Ppu21I	YACGTR	1 cut(s)	677
PshBI	ATTAAT	1 cut(s)	522
Psp124BI	GAGCTC	2 cut(s)	11, 186
Psp6I	CCWGG	1 cut(s)	172
PspCI	CACGTG	1 cut(s)	677
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	4 cut(s)	27, 98, 178, 813
PspPI	GGNCC	1 cut(s)	177
PstI	CTGCAG	1 cut(s)	44
PsuI	RGATCY	3 cut(s)	475, 543, 559
PvuII	CAGCTG	1 cut(s)	280
RsaI	GTAC	1 cut(s)	618
RsaNI	GTAC	1 cut(s)	617
SacI	GAGCTC	2 cut(s)	11, 186
SapI	GCTCTTC	1 cut(s)	218
SaqAI	TTAA	6 cut(s)	293, 522, 536, 719, 804, 826
SatI	GCNGC	5 cut(s)	40, 60, 278, 281, 759
Sau3AI	GATC	5 cut(s)	475, 543, 559, 742, 769
Sau96I	GGNCC	1 cut(s)	177
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	3 cut(s)	11, 30, 186
SfaNI	GCATC	1 cut(s)	712
SfcI	CTRYAG	1 cut(s)	40
SinI	GGWCC	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	803
SmoI	CTYRAG	1 cut(s)	803
Sse9I	AATT	6 cut(s)	119, 315, 523, 606, 716, 822
SsiI	CCGC	3 cut(s)	47, 170, 258
SstI	GAGCTC	2 cut(s)	11, 186
StyD4I	CCNGG	1 cut(s)	172
StyI	CCWWGG	2 cut(s)	461, 600
TaiI	ACGT	2 cut(s)	592, 679
TaqI	TCGA	1 cut(s)	502
TaqII	GACCGA	2 cut(s)	194, 345
TasI	AATT	6 cut(s)	119, 315, 523, 606, 716, 822
TfiI	GAWTC	4 cut(s)	322, 352, 365, 493
Tru1I	TTAA	6 cut(s)	293, 522, 536, 719, 804, 826
Tru9I	TTAA	6 cut(s)	293, 522, 536, 719, 804, 826
TscAI	CASTG	1 cut(s)	555
TseI	GCWGC	5 cut(s)	39, 59, 277, 280, 758
TspDTI	ATGAA	3 cut(s)	456, 500, 660
TspRI	CASTG	1 cut(s)	555
Vha464I	CTTAAG	1 cut(s)	803
VpaK11BI	GGWCC	1 cut(s)	177
VspI	ATTAAT	1 cut(s)	522
XapI	RAATTY	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.