Rw2G054750

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0016211
Physical Location & Seq
Forward (+)
82355371 .. 82358005
2635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G054750.1

Sequence Viewer

Length: 810 bp
ATGTCCCAAGCCCACGAGGCAGTGAGACCGCTCCAACCGGCTGCCTCAATCGCACCCAAATCGCCTTCAAGTTTGAGGTTCCGGAAATCTCAACCCGTGAAATTCAAATGCGATTACTCCTGCTTTGAAGTCAGAGATGTGAGCTACCAACCGCCAGGGACCGAGCTCAGCCTTCTAAATGCTGTTAGTTTTTCGCTTCCGGACAAGAGCTTTGGCTTGATTTTTGGGAGGAGTGGTAGCGGAAAGACTACTCTTGTGCAGCTGCTTGCAGGTTTAAACAAACCAACTTCAGGTTCAATTCAGATTCAAAAATATGGAAATGACGGCAAGCCGATTCGGTCTCCGGAATCCTTATCCACAGGAAGAGTTGGCATTGTATTTCAGTTTCCAGAGAGGTATTTCGTAGCAGATAATGTGCTTGATGAAGTTACTTTTGGGTGGCCAAGGCAAAAGGGAGATCTTCAAATGAAGGAGAATCTTGCTCGAAACCTCCACAGAGCGATTAATTGGGTTGGTTTAAGTGGGATCGCACTGGATAGAGATCCTTACTCCCTTAGTGGTGGCTACAAACGTCGTCTTGCCTTGGCAATTCAACTGGTACAAATCCCAGATTTATTGATATTGGATGAACCTCTTGCTGGTCTTGATTGGAAGGCACGTGCAGATGTTGTGAAGCTACTAAAGCATCTAAAGAAAGAATTAACCATACTTGTTGTCAGCCATGATCTCAAAGAGTTAGCAGCTTTAGTTGATCATTCTTGGAGGATGGATATGGGTGGCATTCTTAAGGAGGAGCCTCTGCCAATTTAA

Protein Analysis

269

Amino Acids

29.81

Weight (kDa)

9.35

Isoelectric Point (pI)

36.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 59 - 213 2.1e-24 ABC transporter
SMC_N PF02463 68 - 246 2e-06 RecF/RecN/SMC N terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14100
fragaria_vesca FvH4_6g53800
malus_domestica MD17G1001700.v1.1
prunus_persica Prupe.3G308400_v2.0.a1
pyrus_communis pycom17g00710
rosa_chinensis RchiOBHm_Chr2g0175931
rosa_laevigata RLG00000022366
rosa_roxburghii Rroxscaffold_2G00076920
rosa_rugosa Rorug02G0588700 Rorug02G0588700
rosa_samantha Rh2AG667900 Rh2BG679400 Rh2CG642200 Rh2DG692900
rosa_wichuraiana Rw2G054750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 260
AccBSI CCGCTC 1 cut(s) 31
AccIII TCCGGA 3 cut(s) 81, 199, 343
AciI CCGC 3 cut(s) 29, 152, 240
AclWI GGATC 2 cut(s) 533, 536
AcoI YGGCCR 1 cut(s) 440
AcsI RAATTY 1 cut(s) 101
AcuI CTGAAG 1 cut(s) 273
AcvI CACGTG 1 cut(s) 659
AfaI GTAC 1 cut(s) 600
AfiI CCNNNNNNNGG 2 cut(s) 290, 638
AflII CTTAAG 1 cut(s) 785
AgsI TTSAA 7 cut(s) 69, 106, 128, 297, 308, 464, 593
AjnI CCWGG 1 cut(s) 154
AjuI GAANNNNNNNTTGG 4 cut(s) 277, 309, 417, 449
AluBI AGCT 6 cut(s) 144, 166, 210, 262, 676, 743
AluI AGCT 6 cut(s) 144, 166, 210, 262, 676, 743
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 2 cut(s) 19, 345
AlwI GGATC 2 cut(s) 533, 536
Aor13HI TCCGGA 3 cut(s) 81, 199, 343
AoxI GGCC 1 cut(s) 440
ApeKI GCWGC 4 cut(s) 41, 259, 262, 740
ApoI RAATTY 1 cut(s) 101
ArsI GACNNNNNNTTYG 2 cut(s) 194, 226
AseI ATTAAT 1 cut(s) 504
AspS9I GGNCC 1 cut(s) 159
AvaII GGWCC 1 cut(s) 159
BalI TGGCCA 1 cut(s) 442
BanII GRGCYC 1 cut(s) 168
BauI CACGAG 1 cut(s) 14
BbrPI CACGTG 1 cut(s) 659
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 4 cut(s) 28, 249, 271, 752
BccI CCATC 1 cut(s) 760
BceAI ACGGC 1 cut(s) 340
BcgI CGANNNNNNTGC 2 cut(s) 42, 76
BciT130I CCWGG 1 cut(s) 156
BclI TGATCA 1 cut(s) 751
BcoDI GTCTC 2 cut(s) 19, 345
BfrI CTTAAG 1 cut(s) 785
BfuAI ACCTGC 1 cut(s) 260
BglI GCCNNNNNGGC 1 cut(s) 17
BglII AGATCT 1 cut(s) 457
BisI GCNGC 4 cut(s) 42, 260, 263, 741
BlpI GCTNAGC 1 cut(s) 167
BlsI GCNGC 4 cut(s) 43, 261, 264, 742
Bme1390I CCNGG 1 cut(s) 156
Bme18I GGWCC 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 3 cut(s) 80, 160, 795
BmrFI CCNGG 1 cut(s) 156
BmsI GCATC 1 cut(s) 694
Bpu1102I GCTNAGC 1 cut(s) 167
BsaAI YACGTR 1 cut(s) 659
BsaBI GATNNNNATC 1 cut(s) 540
BsaI GGTCTC 2 cut(s) 19, 345
BsaJI CCNNGG 3 cut(s) 155, 443, 582
BsaWI WCCGGW 3 cut(s) 81, 199, 343
BsaXI ACNNNNNCTCC 2 cut(s) 220, 250
Bsc4I CCNNNNNNNGG 2 cut(s) 290, 638
Bse118I RCCGGY 1 cut(s) 37
Bse1I ACTGG 2 cut(s) 537, 600
Bse8I GATNNNNATC 1 cut(s) 540
BseAI TCCGGA 3 cut(s) 81, 199, 343
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 3 cut(s) 155, 443, 582
BseGI GGATG 2 cut(s) 631, 771
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 2 cut(s) 290, 638
BseMII CTCAG 1 cut(s) 181
BseNI ACTGG 2 cut(s) 537, 600
BseRI GAGGAG 2 cut(s) 244, 806
BseXI GCAGC 4 cut(s) 28, 249, 271, 752
BsgI GTGCAG 2 cut(s) 278, 681
BshFI GGCC 1 cut(s) 442
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 4 cut(s) 38, 82, 200, 344
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 2 cut(s) 290, 638
BsmAI GTCTC 2 cut(s) 19, 345
BsmFI GGGAC 1 cut(s) 172
BsmI GAATGC 1 cut(s) 780
BsnI GGCC 1 cut(s) 442
Bso31I GGTCTC 2 cut(s) 19, 345
Bsp1286I GDGCHC 1 cut(s) 168
Bsp13I TCCGGA 3 cut(s) 81, 199, 343
Bsp143I GATC 5 cut(s) 457, 525, 541, 724, 751
Bsp1720I GCTNAGC 1 cut(s) 167
BspACI CCGC 3 cut(s) 29, 152, 240
BspANI GGCC 1 cut(s) 442
BspCNI CTCAG 1 cut(s) 180
BspEI TCCGGA 3 cut(s) 81, 199, 343
BspLI GGNNCC 3 cut(s) 80, 160, 795
BspMI ACCTGC 1 cut(s) 260
BspPI GGATC 2 cut(s) 533, 536
BspTI CTTAAG 1 cut(s) 785
BspTNI GGTCTC 2 cut(s) 19, 345
BsrBI CCGCTC 1 cut(s) 31
BsrFI RCCGGY 1 cut(s) 37
BsrI ACTGG 2 cut(s) 537, 600
BssAI RCCGGY 1 cut(s) 37
BssECI CCNNGG 3 cut(s) 155, 443, 582
BssMI GATC 5 cut(s) 457, 525, 541, 724, 751
BssSI CACGAG 1 cut(s) 14
BssT1I CCWWGG 2 cut(s) 443, 582
Bst2BI CACGAG 1 cut(s) 14
Bst2UI CCWGG 1 cut(s) 156
Bst6I CTCTTC 1 cut(s) 358
BstAFI CTTAAG 1 cut(s) 785
BstBAI YACGTR 1 cut(s) 659
BstC8I GCNNGC 2 cut(s) 267, 329
BstDEI CTNAG 2 cut(s) 167, 554
BstF5I GGATG 2 cut(s) 631, 771
BstKTI GATC 5 cut(s) 460, 528, 544, 727, 754
BstMAI GTCTC 2 cut(s) 19, 345
BstMBI GATC 5 cut(s) 457, 525, 541, 724, 751
BstMWI GCNNNNNNNGC 3 cut(s) 17, 50, 682
BstNI CCWGG 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 154
BstV1I GCAGC 4 cut(s) 28, 249, 271, 752
BstX2I RGATCY 2 cut(s) 457, 541
BstYI RGATCY 2 cut(s) 457, 541
BsuRI GGCC 1 cut(s) 442
BtsCI GGATG 2 cut(s) 631, 771
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 2 cut(s) 27, 530
BveI ACCTGC 1 cut(s) 260
Cac8I GCNNGC 2 cut(s) 267, 329
Cfr10I RCCGGY 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 159
Csp6I GTAC 1 cut(s) 599
CviAII CATG 1 cut(s) 722
CviQI GTAC 1 cut(s) 599
DdeI CTNAG 2 cut(s) 167, 554
DpnI GATC 5 cut(s) 459, 527, 543, 726, 753
DpnII GATC 5 cut(s) 457, 525, 541, 724, 751
DraI TTTAAA 1 cut(s) 276
EaeI YGGCCR 1 cut(s) 440
Eam1104I CTCTTC 1 cut(s) 358
EarI CTCTTC 1 cut(s) 358
Ecl136II GAGCTC 1 cut(s) 166
Eco130I CCWWGG 2 cut(s) 443, 582
Eco24I GRGCYC 1 cut(s) 168
Eco31I GGTCTC 2 cut(s) 19, 345
Eco47I GGWCC 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 273
Eco72I CACGTG 1 cut(s) 659
EcoICRI GAGCTC 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 154
EcoT14I CCWWGG 2 cut(s) 443, 582
EcoT38I GRGCYC 1 cut(s) 168
ErhI CCWWGG 2 cut(s) 443, 582
FaeI CATG 1 cut(s) 725
FaiI YATR 4 cut(s) 315, 707, 723, 773
FaqI GGGAC 1 cut(s) 172
FatI CATG 1 cut(s) 721
FbaI TGATCA 1 cut(s) 751
Fnu4HI GCNGC 4 cut(s) 42, 260, 263, 741
FokI GGATG 2 cut(s) 638, 778
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 4 cut(s) 42, 260, 263, 741
GluI GCNGC 4 cut(s) 42, 260, 263, 741
HaeIII GGCC 1 cut(s) 442
HapII CCGG 4 cut(s) 38, 82, 200, 344
Hin1II CATG 1 cut(s) 725
HinfI GANTC 4 cut(s) 304, 334, 347, 475
HpaII CCGG 4 cut(s) 38, 82, 200, 344
Hpy188I TCNGA 2 cut(s) 134, 303
Hpy188III TCNNGA 5 cut(s) 82, 200, 344, 389, 644
Hpy99I CGWCG 1 cut(s) 576
HpyAV CCTTC 4 cut(s) 75, 182, 463, 646
HpyCH4IV ACGT 2 cut(s) 571, 658
HpyCH4V TGCA 3 cut(s) 259, 269, 662
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 50, 682
HpyF3I CTNAG 2 cut(s) 167, 554
HpySE526I ACGT 2 cut(s) 571, 658
Hsp92II CATG 1 cut(s) 725
Kpn2I TCCGGA 3 cut(s) 81, 199, 343
Ksp22I TGATCA 1 cut(s) 751
Kzo9I GATC 5 cut(s) 457, 525, 541, 724, 751
LmnI GCTCC 2 cut(s) 36, 793
Lsp1109I GCAGC 4 cut(s) 28, 249, 271, 752
LweI GCATC 1 cut(s) 694
MaeII ACGT 2 cut(s) 571, 658
MaeIII GTNAC 1 cut(s) 427
MalI GATC 5 cut(s) 459, 527, 543, 726, 753
MbiI CCGCTC 1 cut(s) 31
MboI GATC 5 cut(s) 457, 525, 541, 724, 751
MboII GAAGA 2 cut(s) 375, 452
MflI RGATCY 2 cut(s) 457, 541
MhlI GDGCHC 1 cut(s) 168
MlsI TGGCCA 1 cut(s) 442
MluCI AATT 6 cut(s) 101, 297, 505, 588, 698, 804
MluNI TGGCCA 1 cut(s) 442
MmeI TCCRAC 1 cut(s) 58
Mox20I TGGCCA 1 cut(s) 442
MroI TCCGGA 3 cut(s) 81, 199, 343
MscI TGGCCA 1 cut(s) 442
MseI TTAA 6 cut(s) 275, 504, 518, 701, 786, 808
Msp20I TGGCCA 1 cut(s) 442
MspA1I CMGCKG 1 cut(s) 262
MspCI CTTAAG 1 cut(s) 785
MspI CCGG 4 cut(s) 38, 82, 200, 344
MspR9I CCNGG 1 cut(s) 156
MssI GTTTAAAC 1 cut(s) 276
Mva1269I GAATGC 1 cut(s) 780
MvaI CCWGG 1 cut(s) 156
MwoI GCNNNNNNNGC 3 cut(s) 17, 50, 682
NdeII GATC 5 cut(s) 457, 525, 541, 724, 751
NlaIII CATG 1 cut(s) 725
NlaIV GGNNCC 3 cut(s) 80, 160, 795
PctI GAATGC 1 cut(s) 780
PfeI GAWTC 4 cut(s) 304, 334, 347, 475
PkrI GCNGC 4 cut(s) 43, 261, 264, 742
PmaCI CACGTG 1 cut(s) 659
PmeI GTTTAAAC 1 cut(s) 276
PmlI CACGTG 1 cut(s) 659
Ppu21I YACGTR 1 cut(s) 659
PshBI ATTAAT 1 cut(s) 504
Psp124BI GAGCTC 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 154
PspCI CACGTG 1 cut(s) 659
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 3 cut(s) 80, 160, 795
PspPI GGNCC 1 cut(s) 159
PsuI RGATCY 2 cut(s) 457, 541
PvuII CAGCTG 1 cut(s) 262
RsaI GTAC 1 cut(s) 600
RsaNI GTAC 1 cut(s) 599
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 6 cut(s) 275, 504, 518, 701, 786, 808
SatI GCNGC 4 cut(s) 42, 260, 263, 741
Sau3AI GATC 5 cut(s) 457, 525, 541, 724, 751
Sau96I GGNCC 1 cut(s) 159
ScrFI CCNGG 1 cut(s) 156
SduI GDGCHC 1 cut(s) 168
SfaNI GCATC 1 cut(s) 694
SinI GGWCC 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 785
SmoI CTYRAG 1 cut(s) 785
Sse9I AATT 6 cut(s) 101, 297, 505, 588, 698, 804
SsiI CCGC 3 cut(s) 29, 152, 240
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 154
StyI CCWWGG 2 cut(s) 443, 582
TaiI ACGT 2 cut(s) 574, 661
TaqI TCGA 1 cut(s) 484
TaqII GACCGA 2 cut(s) 176, 327
TasI AATT 6 cut(s) 101, 297, 505, 588, 698, 804
TfiI GAWTC 4 cut(s) 304, 334, 347, 475
Tru1I TTAA 6 cut(s) 275, 504, 518, 701, 786, 808
Tru9I TTAA 6 cut(s) 275, 504, 518, 701, 786, 808
TscAI CASTG 2 cut(s) 27, 537
TseI GCWGC 4 cut(s) 41, 259, 262, 740
TspDTI ATGAA 3 cut(s) 438, 482, 642
TspRI CASTG 2 cut(s) 27, 537
Vha464I CTTAAG 1 cut(s) 785
VpaK11BI GGWCC 1 cut(s) 159
VspI ATTAAT 1 cut(s) 504
XapI RAATTY 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.