Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0016211

Physical Location & Seq

Genomic Coordinates Reverse (-)

613502 .. 621334

Gene Structure 7833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00076920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGGGAGCTCAGTCAGAGATGTGAGCTACCAACCGCCAGGGACCGAGCTCAGCCTTCTAAATGCTGTTAGTTTTTCGCTTCCGGAGAAGAGCTTTGGCTTGATTTTTGGGAGGAGTGGTAGCGGAAAGACTACTCTTGTGCAGCTGCTTGCAGGTTTAAACAAACCAACTTCAGGTTCAATTCAGATTCAAAAATATGGAAATGATGGCAAGCCGATTCAGTCTCCGGAATCCTTATCCACAGGAAGAGTTGGCATTGTATTTCAGTTTCCAGAGAGGTATTTCGTGGCAGATAATGTGCTTGATGAAGTTACTTTTGGGTGGCCAAGGCAAAAGGGAGATCTTCAAATGAAGGAGAATCTTGCTCGAAACCTCCACAGAGCGATTAATTGGGTTGGTTTAAGTGGGATCTCACTGGATAGAGATCCTTACTCCCTTAGTGGTGGCTACAAACGTCGTCTTGCCTTGGCAATTCAACTGGTACAAATCCCAGATTTATTGATATTGGATGAACCTCTTGCTGGTCTTGATTGGAAGGCACGTGCAGATGTTGTGAAGCTACTAAAGCATCTAAAGAAAGAATTAACCATACTTGTTGTCAGCCATGATCTCAGAGAGTTAGCAGCTTTAGTTGATCATTCTTGGAGGATGGATATGGGTGGCATTCTTAAGGAGGAGCCTCTGCCAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

230

Amino Acids

25.4

Weight (kDa)

8.75

Isoelectric Point (pI)

29.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	20 - 174	5.4e-25	ABC transporter
SMC_N	PF02463	29 - 206	5.6e-07	RecF/RecN/SMC N terminal domain
AAA_21	PF13304	141 - 206	8.7e-06	AAA domain, putative AbiEii toxin, Type IV TA system

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14100
fragaria_vesca	FvH4_6g53800
malus_domestica	MD17G1001700.v1.1
prunus_persica	Prupe.3G308400_v2.0.a1
pyrus_communis	pycom17g00710
rosa_chinensis	RchiOBHm_Chr2g0175931
rosa_laevigata	RLG00000022366
rosa_roxburghii	Rroxscaffold_2G00076920
rosa_rugosa	Rorug02G0588700 Rorug02G0588700
rosa_samantha	Rh2AG667900 Rh2BG679400 Rh2CG642200 Rh2DG692900
rosa_wichuraiana	Rw2G054750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	143
AccIII	TCCGGA	2 cut(s)	82, 226
AciI	CCGC	2 cut(s)	35, 123
AclWI	GGATC	2 cut(s)	416, 419
AcoI	YGGCCR	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	156
AcvI	CACGTG	1 cut(s)	542
AfaI	GTAC	1 cut(s)	483
AfiI	CCNNNNNNNGG	2 cut(s)	173, 521
AflII	CTTAAG	1 cut(s)	668
AgsI	TTSAA	4 cut(s)	180, 191, 347, 476
AjnI	CCWGG	1 cut(s)	37
AjuI	GAANNNNNNNTTGG	4 cut(s)	160, 192, 300, 332
AluBI	AGCT	7 cut(s)	9, 27, 49, 93, 145, 559, 626
AluI	AGCT	7 cut(s)	9, 27, 49, 93, 145, 559, 626
Alw21I	GWGCWC	2 cut(s)	11, 51
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	2 cut(s)	416, 419
Aor13HI	TCCGGA	2 cut(s)	82, 226
AoxI	GGCC	1 cut(s)	323
ApeKI	GCWGC	3 cut(s)	142, 145, 623
AseI	ATTAAT	1 cut(s)	387
AspS9I	GGNCC	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	42
BalI	TGGCCA	1 cut(s)	325
BanII	GRGCYC	2 cut(s)	11, 51
BbrPI	CACGTG	1 cut(s)	542
Bbv12I	GWGCWC	2 cut(s)	11, 51
BbvI	GCAGC	3 cut(s)	132, 154, 635
BccI	CCATC	2 cut(s)	200, 643
BciT130I	CCWGG	1 cut(s)	39
BclI	TGATCA	1 cut(s)	634
BcoDI	GTCTC	1 cut(s)	228
BfrI	CTTAAG	1 cut(s)	668
BfuAI	ACCTGC	1 cut(s)	143
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	3 cut(s)	143, 146, 624
BlpI	GCTNAGC	1 cut(s)	50
BlsI	GCNGC	3 cut(s)	144, 147, 625
Bme1390I	CCNGG	1 cut(s)	39
Bme18I	GGWCC	1 cut(s)	42
BmgT120I	GGNCC	1 cut(s)	42
BmiI	GGNNCC	2 cut(s)	43, 678
BmrFI	CCNGG	1 cut(s)	39
BmsI	GCATC	1 cut(s)	577
Bpu1102I	GCTNAGC	1 cut(s)	50
BsaAI	YACGTR	1 cut(s)	542
BsaBI	GATNNNNATC	1 cut(s)	423
BsaJI	CCNNGG	3 cut(s)	38, 326, 465
BsaWI	WCCGGW	2 cut(s)	82, 226
BsaXI	ACNNNNNCTCC	2 cut(s)	103, 133
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 521
Bse1I	ACTGG	2 cut(s)	420, 483
Bse8I	GATNNNNATC	1 cut(s)	423
BseAI	TCCGGA	2 cut(s)	82, 226
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	3 cut(s)	38, 326, 465
BseGI	GGATG	2 cut(s)	514, 654
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	2 cut(s)	173, 521
BseMII	CTCAG	3 cut(s)	24, 64, 625
BseNI	ACTGG	2 cut(s)	420, 483
BseRI	GAGGAG	2 cut(s)	127, 689
BseXI	GCAGC	3 cut(s)	132, 154, 635
BsgI	GTGCAG	2 cut(s)	161, 564
BshFI	GGCC	1 cut(s)	325
BsiHKAI	GWGCWC	2 cut(s)	11, 51
BsiSI	CCGG	2 cut(s)	83, 227
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	2 cut(s)	173, 521
BsmAI	GTCTC	1 cut(s)	228
BsmFI	GGGAC	1 cut(s)	55
BsmI	GAATGC	1 cut(s)	663
BsnI	GGCC	1 cut(s)	325
Bsp1286I	GDGCHC	2 cut(s)	11, 51
Bsp13I	TCCGGA	2 cut(s)	82, 226
Bsp143I	GATC	5 cut(s)	340, 408, 424, 607, 634
Bsp1720I	GCTNAGC	1 cut(s)	50
BspACI	CCGC	2 cut(s)	35, 123
BspANI	GGCC	1 cut(s)	325
BspCNI	CTCAG	3 cut(s)	23, 63, 624
BspEI	TCCGGA	2 cut(s)	82, 226
BspLI	GGNNCC	2 cut(s)	43, 678
BspMI	ACCTGC	1 cut(s)	143
BspPI	GGATC	2 cut(s)	416, 419
BspQI	GCTCTTC	1 cut(s)	83
BspTI	CTTAAG	1 cut(s)	668
BsrI	ACTGG	2 cut(s)	420, 483
BssECI	CCNNGG	3 cut(s)	38, 326, 465
BssMI	GATC	5 cut(s)	340, 408, 424, 607, 634
BssT1I	CCWWGG	2 cut(s)	326, 465
Bst2UI	CCWGG	1 cut(s)	39
Bst6I	CTCTTC	2 cut(s)	83, 241
BstAFI	CTTAAG	1 cut(s)	668
BstBAI	YACGTR	1 cut(s)	542
BstC8I	GCNNGC	2 cut(s)	150, 212
BstDEI	CTNAG	4 cut(s)	10, 50, 437, 611
BstF5I	GGATG	2 cut(s)	514, 654
BstKTI	GATC	5 cut(s)	343, 411, 427, 610, 637
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	5 cut(s)	340, 408, 424, 607, 634
BstMWI	GCNNNNNNNGC	1 cut(s)	565
BstNI	CCWGG	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	37
BstV1I	GCAGC	3 cut(s)	132, 154, 635
BstX2I	RGATCY	3 cut(s)	340, 408, 424
BstYI	RGATCY	3 cut(s)	340, 408, 424
BsuRI	GGCC	1 cut(s)	325
BtsCI	GGATG	2 cut(s)	514, 654
BtsIMutI	CAGTG	1 cut(s)	413
BveI	ACCTGC	1 cut(s)	143
Cac8I	GCNNGC	2 cut(s)	150, 212
Cfr13I	GGNCC	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	482
CviAII	CATG	1 cut(s)	605
CviQI	GTAC	1 cut(s)	482
DdeI	CTNAG	4 cut(s)	10, 50, 437, 611
DpnI	GATC	5 cut(s)	342, 410, 426, 609, 636
DpnII	GATC	5 cut(s)	340, 408, 424, 607, 634
DraI	TTTAAA	1 cut(s)	159
EaeI	YGGCCR	1 cut(s)	323
Eam1104I	CTCTTC	2 cut(s)	83, 241
EarI	CTCTTC	2 cut(s)	83, 241
Ecl136II	GAGCTC	2 cut(s)	9, 49
Eco130I	CCWWGG	2 cut(s)	326, 465
Eco24I	GRGCYC	2 cut(s)	11, 51
Eco47I	GGWCC	1 cut(s)	42
Eco53kI	GAGCTC	2 cut(s)	9, 49
Eco57I	CTGAAG	1 cut(s)	156
Eco72I	CACGTG	1 cut(s)	542
EcoICRI	GAGCTC	2 cut(s)	9, 49
EcoRII	CCWGG	1 cut(s)	37
EcoT14I	CCWWGG	2 cut(s)	326, 465
EcoT38I	GRGCYC	2 cut(s)	11, 51
ErhI	CCWWGG	2 cut(s)	326, 465
FaeI	CATG	1 cut(s)	608
FaiI	YATR	4 cut(s)	198, 590, 606, 656
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	1 cut(s)	604
FbaI	TGATCA	1 cut(s)	634
Fnu4HI	GCNGC	3 cut(s)	143, 146, 624
FokI	GGATG	2 cut(s)	521, 661
FriOI	GRGCYC	2 cut(s)	11, 51
Fsp4HI	GCNGC	3 cut(s)	143, 146, 624
GluI	GCNGC	3 cut(s)	143, 146, 624
HaeIII	GGCC	1 cut(s)	325
HapII	CCGG	2 cut(s)	83, 227
Hin1II	CATG	1 cut(s)	608
HinfI	GANTC	4 cut(s)	187, 217, 230, 358
HpaII	CCGG	2 cut(s)	83, 227
Hpy188I	TCNGA	3 cut(s)	17, 186, 614
Hpy188III	TCNNGA	4 cut(s)	83, 227, 272, 527
Hpy99I	CGWCG	1 cut(s)	459
HpyAV	CCTTC	3 cut(s)	65, 346, 529
HpyCH4IV	ACGT	2 cut(s)	454, 541
HpyCH4V	TGCA	3 cut(s)	142, 152, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	565
HpyF3I	CTNAG	4 cut(s)	10, 50, 437, 611
HpySE526I	ACGT	2 cut(s)	454, 541
Hsp92II	CATG	1 cut(s)	608
Kpn2I	TCCGGA	2 cut(s)	82, 226
Ksp22I	TGATCA	1 cut(s)	634
Kzo9I	GATC	5 cut(s)	340, 408, 424, 607, 634
LguI	GCTCTTC	1 cut(s)	83
LmnI	GCTCC	2 cut(s)	6, 676
Lsp1109I	GCAGC	3 cut(s)	132, 154, 635
LweI	GCATC	1 cut(s)	577
MaeII	ACGT	2 cut(s)	454, 541
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	5 cut(s)	342, 410, 426, 609, 636
MboI	GATC	5 cut(s)	340, 408, 424, 607, 634
MboII	GAAGA	3 cut(s)	100, 258, 335
MflI	RGATCY	3 cut(s)	340, 408, 424
MhlI	GDGCHC	2 cut(s)	11, 51
MlsI	TGGCCA	1 cut(s)	325
MluCI	AATT	5 cut(s)	180, 388, 471, 581, 687
MluNI	TGGCCA	1 cut(s)	325
MnlI	CCTC	7 cut(s)	105, 270, 383, 525, 639, 667, 690
Mox20I	TGGCCA	1 cut(s)	325
MroI	TCCGGA	2 cut(s)	82, 226
MscI	TGGCCA	1 cut(s)	325
MseI	TTAA	6 cut(s)	158, 387, 401, 584, 669, 691
Msp20I	TGGCCA	1 cut(s)	325
MspA1I	CMGCKG	1 cut(s)	145
MspCI	CTTAAG	1 cut(s)	668
MspI	CCGG	2 cut(s)	83, 227
MspR9I	CCNGG	1 cut(s)	39
MssI	GTTTAAAC	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	663
MvaI	CCWGG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	565
NdeII	GATC	5 cut(s)	340, 408, 424, 607, 634
NlaIII	CATG	1 cut(s)	608
NlaIV	GGNNCC	2 cut(s)	43, 678
PciSI	GCTCTTC	1 cut(s)	83
PctI	GAATGC	1 cut(s)	663
PfeI	GAWTC	4 cut(s)	187, 217, 230, 358
PkrI	GCNGC	3 cut(s)	144, 147, 625
PmaCI	CACGTG	1 cut(s)	542
PmeI	GTTTAAAC	1 cut(s)	159
PmlI	CACGTG	1 cut(s)	542
Ppu21I	YACGTR	1 cut(s)	542
PshBI	ATTAAT	1 cut(s)	387
Psp124BI	GAGCTC	2 cut(s)	11, 51
Psp6I	CCWGG	1 cut(s)	37
PspCI	CACGTG	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	37
PspN4I	GGNNCC	2 cut(s)	43, 678
PspPI	GGNCC	1 cut(s)	42
PsuI	RGATCY	3 cut(s)	340, 408, 424
PvuII	CAGCTG	1 cut(s)	145
RsaI	GTAC	1 cut(s)	483
RsaNI	GTAC	1 cut(s)	482
SacI	GAGCTC	2 cut(s)	11, 51
SapI	GCTCTTC	1 cut(s)	83
SaqAI	TTAA	6 cut(s)	158, 387, 401, 584, 669, 691
SatI	GCNGC	3 cut(s)	143, 146, 624
Sau3AI	GATC	5 cut(s)	340, 408, 424, 607, 634
Sau96I	GGNCC	1 cut(s)	42
ScrFI	CCNGG	1 cut(s)	39
SduI	GDGCHC	2 cut(s)	11, 51
SfaNI	GCATC	1 cut(s)	577
SinI	GGWCC	1 cut(s)	42
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
Sse9I	AATT	5 cut(s)	180, 388, 471, 581, 687
SsiI	CCGC	2 cut(s)	35, 123
SstI	GAGCTC	2 cut(s)	11, 51
StyD4I	CCNGG	1 cut(s)	37
StyI	CCWWGG	2 cut(s)	326, 465
TaiI	ACGT	2 cut(s)	457, 544
TaqI	TCGA	1 cut(s)	367
TaqII	GACCGA	1 cut(s)	59
TasI	AATT	5 cut(s)	180, 388, 471, 581, 687
TfiI	GAWTC	4 cut(s)	187, 217, 230, 358
Tru1I	TTAA	6 cut(s)	158, 387, 401, 584, 669, 691
Tru9I	TTAA	6 cut(s)	158, 387, 401, 584, 669, 691
TscAI	CASTG	1 cut(s)	420
TseI	GCWGC	3 cut(s)	142, 145, 623
TspDTI	ATGAA	3 cut(s)	321, 365, 525
TspRI	CASTG	1 cut(s)	420
Vha464I	CTTAAG	1 cut(s)	668
VpaK11BI	GGWCC	1 cut(s)	42
VspI	ATTAAT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.