Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0016211

Physical Location & Seq

Genomic Coordinates Forward (+)

26863824 .. 26872836

Gene Structure 9013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G308400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCGAGCTCCGTTTTCGCCTTCAACCCCTTAACAGGGCGGAGAGCGCGCGAACCAGTAACCCCAATCGCACCCAAGTCACGCTCAAGTTTGAATTTCCGAAACTCACACTCTGTAAAGTTCAAATGCGAGCACTCGTGCTTTGAAGTTAGCAATGTTAGCTACCAACCGCCAGGGACCGAGCTTAGCCTTTTAAATTCTGTTAGTTTTTCACTTCCGGAGAAAAGCTTTGGCTTAATTTTTGGACGGAGTGGTAGTGGAAAGACTACTCTTGTGCAGCTTCTTGCAGAGATAAGCAAACCAACTTCAGGTTCAATTTACATTCAAAAATATGGAAATGATGGCAATCCAGTTCAGTCTCCCGAACCCTTATCCTCAGGAAGAGTTGGCATTGTATTTCAGTTTCCAGAGAGGTATTTTGTCGCGGATAATGTTCTTGAGGAAGTTACATTTGGGTGGCCAAGACAAAAGGGTGATCTTCAAATGAAGGAGCATCTTGCTCTAAGACTCCAACGAGCAATCAATTGGGTTGGTTTAAGTGGGATCTCATTGGATAGAGATCCCCACTCCCTTAGTGGTGGCTACAAACGTCGGCTTGCCTTGGCAATTCAATTAGTGCAAGTCCCTGATTTATTGATATTGGATGAACCTCTTGCTGGTCTTGATTGGAAGGCACGTGCTGATGTTGTGAAGCTTCTAAAGCATCTAAAGAAAGAATTGACTATACTTGTTGTCAGCCATGATCTCAAAGAGTTAGCAGCTATAGTTGATCGATCTTGGAGGATGGAGATGGGTGGGATTCTTAGGGAAGAGCCTCTACCGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

276

Amino Acids

30.56

Weight (kDa)

9.32

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14100
fragaria_vesca	FvH4_6g53800
malus_domestica	MD17G1001700.v1.1
prunus_persica	Prupe.3G308400_v2.0.a1
pyrus_communis	pycom17g00710
rosa_chinensis	RchiOBHm_Chr2g0175931
rosa_laevigata	RLG00000022366
rosa_roxburghii	Rroxscaffold_2G00076920
rosa_rugosa	Rorug02G0588700 Rorug02G0588700
rosa_samantha	Rh2AG667900 Rh2BG679400 Rh2CG642200 Rh2DG692900
rosa_wichuraiana	Rw2G054750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	49, 51, 425
AccIII	TCCGGA	1 cut(s)	217
AciI	CCGC	3 cut(s)	40, 170, 425
AclWI	GGATC	2 cut(s)	551, 554
AcoI	YGGCCR	1 cut(s)	458
AcsI	RAATTY	2 cut(s)	94, 196
AcuI	CTGAAG	1 cut(s)	291
AcvI	CACGTG	1 cut(s)	677
AfiI	CCNNNNNNNGG	4 cut(s)	35, 36, 308, 656
AgsI	TTSAA	8 cut(s)	25, 94, 124, 146, 315, 326, 482, 611
AjnI	CCWGG	1 cut(s)	172
AjuI	GAANNNNNNNTTGG	4 cut(s)	295, 327, 435, 467
AluBI	AGCT	7 cut(s)	9, 162, 184, 228, 280, 694, 761
AluI	AGCT	7 cut(s)	9, 162, 184, 228, 280, 694, 761
Alw21I	GWGCWC	2 cut(s)	11, 135
Alw26I	GTCTC	1 cut(s)	363
AlwI	GGATC	2 cut(s)	551, 554
Aor13HI	TCCGGA	1 cut(s)	217
AoxI	GGCC	1 cut(s)	458
ApeKI	GCWGC	2 cut(s)	277, 758
ApoI	RAATTY	2 cut(s)	94, 196
AspLEI	GCGC	2 cut(s)	49, 51
AspS9I	GGNCC	1 cut(s)	177
AsuHPI	GGTGA	1 cut(s)	485
AvaII	GGWCC	1 cut(s)	177
AxyI	CCTNAGG	1 cut(s)	376
BalI	TGGCCA	1 cut(s)	460
BanII	GRGCYC	1 cut(s)	11
BarI	GAAGNNNNNNTAC	1 cut(s)	801
BauI	CACGAG	1 cut(s)	136
BbrPI	CACGTG	1 cut(s)	677
Bbv12I	GWGCWC	2 cut(s)	11, 135
BbvI	GCAGC	2 cut(s)	289, 770
BccI	CCATC	3 cut(s)	335, 778, 784
BciT130I	CCWGG	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	762
BisI	GCNGC	2 cut(s)	278, 759
BlpI	GCTNAGC	1 cut(s)	185
BlsI	GCNGC	2 cut(s)	279, 760
Bme1390I	CCNGG	1 cut(s)	174
Bme18I	GGWCC	1 cut(s)	177
BmgT120I	GGNCC	1 cut(s)	177
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	1 cut(s)	174
BmsI	GCATC	2 cut(s)	502, 712
Bpu1102I	GCTNAGC	1 cut(s)	185
BpuEI	CTTGAG	2 cut(s)	70, 458
Bsa29I	ATCGAT	1 cut(s)	772
BsaAI	YACGTR	1 cut(s)	677
BsaBI	GATNNNNATC	2 cut(s)	345, 558
BsaJI	CCNNGG	2 cut(s)	173, 600
BsaWI	WCCGGW	1 cut(s)	217
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 36, 308, 656
Bse1I	ACTGG	2 cut(s)	56, 350
Bse21I	CCTNAGG	1 cut(s)	376
Bse3DI	GCAATG	1 cut(s)	160
Bse8I	GATNNNNATC	2 cut(s)	345, 558
BseAI	TCCGGA	1 cut(s)	217
BseBI	CCWGG	1 cut(s)	174
BseCI	ATCGAT	1 cut(s)	772
BseDI	CCNNGG	2 cut(s)	173, 600
BseGI	GGATG	2 cut(s)	649, 789
BseJI	GATNNNNATC	2 cut(s)	345, 558
BseLI	CCNNNNNNNGG	4 cut(s)	35, 36, 308, 656
BseMI	GCAATG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	2 cut(s)	56, 350
BsePI	GCGCGC	1 cut(s)	47
BseXI	GCAGC	2 cut(s)	289, 770
BsgI	GTGCAG	1 cut(s)	296
Bsh1236I	CGCG	3 cut(s)	49, 51, 425
BshFI	GGCC	1 cut(s)	460
BshVI	ATCGAT	1 cut(s)	772
BsiHKAI	GWGCWC	2 cut(s)	11, 135
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	2 cut(s)	190, 608
BslI	CCNNNNNNNGG	4 cut(s)	35, 36, 308, 656
BsmAI	GTCTC	1 cut(s)	363
BsmFI	GGGAC	2 cut(s)	190, 608
BsnI	GGCC	1 cut(s)	460
Bsp1286I	GDGCHC	2 cut(s)	11, 135
Bsp13I	TCCGGA	1 cut(s)	217
Bsp143I	GATC	6 cut(s)	475, 543, 559, 742, 769, 773
Bsp1720I	GCTNAGC	1 cut(s)	185
BspACI	CCGC	3 cut(s)	40, 170, 425
BspANI	GGCC	1 cut(s)	460
BspCNI	CTCAG	1 cut(s)	389
BspDI	ATCGAT	1 cut(s)	772
BspEI	TCCGGA	1 cut(s)	217
BspFNI	CGCG	3 cut(s)	49, 51, 425
BspLI	GGNNCC	1 cut(s)	178
BspPI	GGATC	2 cut(s)	551, 554
BspQI	GCTCTTC	1 cut(s)	804
BsrDI	GCAATG	1 cut(s)	160
BsrI	ACTGG	2 cut(s)	56, 350
BssECI	CCNNGG	2 cut(s)	173, 600
BssHII	GCGCGC	1 cut(s)	47
BssMI	GATC	6 cut(s)	475, 543, 559, 742, 769, 773
BssSI	CACGAG	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	600
Bst2BI	CACGAG	1 cut(s)	136
Bst2UI	CCWGG	1 cut(s)	174
Bst6I	CTCTTC	2 cut(s)	376, 804
BstBAI	YACGTR	1 cut(s)	677
BstC8I	GCNNGC	4 cut(s)	7, 49, 131, 597
BstDEI	CTNAG	5 cut(s)	185, 376, 503, 572, 803
BstF5I	GGATG	2 cut(s)	649, 789
BstFNI	CGCG	3 cut(s)	49, 51, 425
BstHHI	GCGC	2 cut(s)	49, 51
BstKTI	GATC	6 cut(s)	478, 546, 562, 745, 772, 776
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	6 cut(s)	475, 543, 559, 742, 769, 773
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 159, 700
BstNI	CCWGG	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	172
BstSFI	CTRYAG	1 cut(s)	762
BstUI	CGCG	3 cut(s)	49, 51, 425
BstV1I	GCAGC	2 cut(s)	289, 770
BstX2I	RGATCY	2 cut(s)	543, 559
BstYI	RGATCY	2 cut(s)	543, 559
Bsu15I	ATCGAT	1 cut(s)	772
Bsu36I	CCTNAGG	1 cut(s)	376
BsuRI	GGCC	1 cut(s)	460
BsuTUI	ATCGAT	1 cut(s)	772
BtsCI	GGATG	2 cut(s)	649, 789
Cac8I	GCNNGC	4 cut(s)	7, 49, 131, 597
CfoI	GCGC	2 cut(s)	49, 51
Cfr13I	GGNCC	1 cut(s)	177
ClaI	ATCGAT	1 cut(s)	772
CviAII	CATG	1 cut(s)	740
DdeI	CTNAG	5 cut(s)	185, 376, 503, 572, 803
DpnI	GATC	6 cut(s)	477, 545, 561, 744, 771, 775
DpnII	GATC	6 cut(s)	475, 543, 559, 742, 769, 773
DraI	TTTAAA	1 cut(s)	195
EaeI	YGGCCR	1 cut(s)	458
Eam1104I	CTCTTC	2 cut(s)	376, 804
EarI	CTCTTC	2 cut(s)	376, 804
EciI	GGCGGA	1 cut(s)	55
Ecl136II	GAGCTC	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	600
Eco24I	GRGCYC	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	177
Eco53kI	GAGCTC	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	291
Eco72I	CACGTG	1 cut(s)	677
Eco81I	CCTNAGG	1 cut(s)	376
EcoICRI	GAGCTC	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	600
EcoT38I	GRGCYC	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	600
FaeI	CATG	1 cut(s)	743
FaiI	YATR	4 cut(s)	333, 725, 741, 764
FaqI	GGGAC	2 cut(s)	190, 608
FatI	CATG	1 cut(s)	739
Fnu4HI	GCNGC	2 cut(s)	278, 759
FokI	GGATG	2 cut(s)	656, 796
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	2 cut(s)	278, 759
GlaI	GCGC	2 cut(s)	48, 50
GluI	GCNGC	2 cut(s)	278, 759
HaeIII	GGCC	1 cut(s)	460
HapII	CCGG	1 cut(s)	218
HhaI	GCGC	2 cut(s)	49, 51
Hin1II	CATG	1 cut(s)	743
Hin6I	GCGC	2 cut(s)	47, 49
HinP1I	GCGC	2 cut(s)	47, 49
HindIII	AAGCTT	2 cut(s)	226, 692
HinfI	GANTC	2 cut(s)	507, 799
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	1 cut(s)	485
Hpy188I	TCNGA	1 cut(s)	101
Hpy188III	TCNNGA	6 cut(s)	218, 362, 378, 407, 437, 662
Hpy99I	CGWCG	1 cut(s)	594
HpyAV	CCTTC	3 cut(s)	31, 481, 664
HpyCH4IV	ACGT	2 cut(s)	589, 676
HpyCH4V	TGCA	3 cut(s)	277, 287, 619
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 159, 700
HpyF3I	CTNAG	5 cut(s)	185, 376, 503, 572, 803
HpySE526I	ACGT	2 cut(s)	589, 676
Hsp92II	CATG	1 cut(s)	743
HspAI	GCGC	2 cut(s)	47, 49
Kpn2I	TCCGGA	1 cut(s)	217
Kzo9I	GATC	6 cut(s)	475, 543, 559, 742, 769, 773
LguI	GCTCTTC	1 cut(s)	804
LmnI	GCTCC	2 cut(s)	14, 490
Lsp1109I	GCAGC	2 cut(s)	289, 770
LweI	GCATC	2 cut(s)	502, 712
MaeII	ACGT	2 cut(s)	589, 676
MaeIII	GTNAC	3 cut(s)	58, 78, 445
MalI	GATC	6 cut(s)	477, 545, 561, 744, 771, 775
MboI	GATC	6 cut(s)	475, 543, 559, 742, 769, 773
MboII	GAAGA	3 cut(s)	393, 470, 821
MfeI	CAATTG	1 cut(s)	523
MflI	RGATCY	2 cut(s)	543, 559
MhlI	GDGCHC	2 cut(s)	11, 135
MlsI	TGGCCA	1 cut(s)	460
MluCI	AATT	8 cut(s)	94, 196, 237, 315, 523, 606, 611, 716
MluNI	TGGCCA	1 cut(s)	460
MlyI	GAGTC	1 cut(s)	501
MmeI	TCCRAC	1 cut(s)	535
MnlI	CCTC	6 cut(s)	385, 405, 433, 660, 774, 825
Mox20I	TGGCCA	1 cut(s)	460
MroI	TCCGGA	1 cut(s)	217
MscI	TGGCCA	1 cut(s)	460
MseI	TTAA	4 cut(s)	32, 194, 236, 536
MslI	CAYNNNNRTG	1 cut(s)	454
Msp20I	TGGCCA	1 cut(s)	460
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	174
MunI	CAATTG	1 cut(s)	523
MvaI	CCWGG	1 cut(s)	174
MvnI	CGCG	3 cut(s)	49, 51, 425
MwoI	GCNNNNNNNGC	3 cut(s)	46, 159, 700
NdeII	GATC	6 cut(s)	475, 543, 559, 742, 769, 773
NlaIII	CATG	1 cut(s)	743
NlaIV	GGNNCC	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	78
PauI	GCGCGC	1 cut(s)	47
PciSI	GCTCTTC	1 cut(s)	804
PfeI	GAWTC	1 cut(s)	799
PkrI	GCNGC	2 cut(s)	279, 760
PleI	GAGTC	1 cut(s)	501
PmaCI	CACGTG	1 cut(s)	677
PmlI	CACGTG	1 cut(s)	677
PpsI	GAGTC	1 cut(s)	501
Ppu21I	YACGTR	1 cut(s)	677
Psp124BI	GAGCTC	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	172
PspCI	CACGTG	1 cut(s)	677
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	1 cut(s)	177
PsuI	RGATCY	2 cut(s)	543, 559
PteI	GCGCGC	1 cut(s)	47
RseI	CAYNNNNRTG	1 cut(s)	454
SacI	GAGCTC	1 cut(s)	11
SapI	GCTCTTC	1 cut(s)	804
SaqAI	TTAA	4 cut(s)	32, 194, 236, 536
SatI	GCNGC	2 cut(s)	278, 759
Sau3AI	GATC	6 cut(s)	475, 543, 559, 742, 769, 773
Sau96I	GGNCC	1 cut(s)	177
SchI	GAGTC	1 cut(s)	501
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	2 cut(s)	11, 135
SfaNI	GCATC	2 cut(s)	502, 712
SfcI	CTRYAG	1 cut(s)	762
SinI	GGWCC	1 cut(s)	177
SmiMI	CAYNNNNRTG	1 cut(s)	454
SmlI	CTYRAG	2 cut(s)	85, 437
SmoI	CTYRAG	2 cut(s)	85, 437
Sse9I	AATT	8 cut(s)	94, 196, 237, 315, 523, 606, 611, 716
SsiI	CCGC	3 cut(s)	40, 170, 425
SstI	GAGCTC	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	172
StyI	CCWWGG	1 cut(s)	600
TaiI	ACGT	2 cut(s)	592, 679
TaqI	TCGA	1 cut(s)	772
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	8 cut(s)	94, 196, 237, 315, 523, 606, 611, 716
TfiI	GAWTC	1 cut(s)	799
Tru1I	TTAA	4 cut(s)	32, 194, 236, 536
Tru9I	TTAA	4 cut(s)	32, 194, 236, 536
TseFI	GTSAC	1 cut(s)	78
TseI	GCWGC	2 cut(s)	277, 758
Tsp45I	GTSAC	1 cut(s)	78
TspDTI	ATGAA	2 cut(s)	500, 660
TspGWI	ACGGA	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	177
XapI	RAATTY	2 cut(s)	94, 196
XcmI	CCANNNNNNNNNTGG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.