Rh2CG642200

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0016211
Physical Location & Seq
Forward (+)
81224318 .. 81232261
7944 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG642200.1

Sequence Viewer

Length: 762 bp
ATGGCGAGCTCAGTTTTGGCTTTGGAGCCCTTTTCAGGCTGCAGACCGCTCCAACCGGCTGCCTCAATCGCACCCAAATCGCCTTCAAGTTGGAGGTTCCGGAAATCTCAACCCGTGAAATTCAAATGCGATTACTCCTGCTTTGAAGTCAGGGATGTGAGCTACCAACCGCCAGGGACCGAGCTCAGCCTTCTAAATGCTGTTAGTTTTTCGCTTCCGGAGAAGAGCTTTGGCTTGATTTTTGGGAGGAGTGGTAGCGGAAAGACTACTCTTGTGCAGCTGCTTGCAGGTTTAAACAAACCAACTTCAGGTTCAATTCAGATTCAAAAATATGGAAATGACGGCAAGCCGATTCAGTCTCCGGAATCCTTATCCACAACAAGAGTTGGCATTGTATTTCAGTTTCCAGAGAGGTATTTCGTGGCAGATAATGTGCTTGATGAAGTTACTTTTGGGTGGCCAAGGCAAAAGGGAGATCTTCAAATGAAGGAGAATCTTGCTCGAAACCTCCACAGAGCGATTAATTGGGTTGGTTTAAGTGGGATCGCACTGGATAGAGATCCTTACTCCCTTAGTGGTGGCTACAAACGTCGTCTTGCCTTGGCAATTCAACTGGTACAAATCCCAGATTTATTGATATTGGATGAACCTCTTGCTGGTCTTGATTGGAAGGCACGTGCAGATGTTGTGAAGCTACTGAAGCATCTAAAGAAAGAATTAACCATACTTGTTGTCAGCCATGATCTCAAGTCTGTCCCTTGA

Protein Analysis

253

Amino Acids

27.94

Weight (kDa)

9.49

Isoelectric Point (pI)

37.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 65 - 219 6.4e-25 ABC transporter
SMC_N PF02463 74 - 248 5.3e-06 RecF/RecN/SMC N terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14100
fragaria_vesca FvH4_6g53800
malus_domestica MD17G1001700.v1.1
prunus_persica Prupe.3G308400_v2.0.a1
pyrus_communis pycom17g00710
rosa_chinensis RchiOBHm_Chr2g0175931
rosa_laevigata RLG00000022366
rosa_roxburghii Rroxscaffold_2G00076920
rosa_rugosa Rorug02G0588700 Rorug02G0588700
rosa_samantha Rh2AG667900 Rh2BG679400 Rh2CG642200 Rh2DG692900
rosa_wichuraiana Rw2G054750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 278
AccBSI CCGCTC 1 cut(s) 49
AccIII TCCGGA 3 cut(s) 99, 217, 361
AciI CCGC 3 cut(s) 47, 170, 258
AclWI GGATC 2 cut(s) 551, 554
AcoI YGGCCR 1 cut(s) 458
AcsI RAATTY 1 cut(s) 119
AcuI CTGAAG 2 cut(s) 291, 719
AcvI CACGTG 1 cut(s) 677
AfaI GTAC 1 cut(s) 618
AfiI CCNNNNNNNGG 3 cut(s) 35, 308, 656
AgsI TTSAA 7 cut(s) 87, 124, 146, 315, 326, 482, 611
AjnI CCWGG 1 cut(s) 172
AjuI GAANNNNNNNTTGG 4 cut(s) 295, 327, 435, 467
AluBI AGCT 6 cut(s) 9, 162, 184, 228, 280, 694
AluI AGCT 6 cut(s) 9, 162, 184, 228, 280, 694
Alw21I GWGCWC 2 cut(s) 11, 186
Alw26I GTCTC 1 cut(s) 363
AlwI GGATC 2 cut(s) 551, 554
Aor13HI TCCGGA 3 cut(s) 99, 217, 361
AoxI GGCC 1 cut(s) 458
ApeKI GCWGC 4 cut(s) 39, 59, 277, 280
ApoI RAATTY 1 cut(s) 119
AseI ATTAAT 1 cut(s) 522
AspS9I GGNCC 1 cut(s) 177
AvaII GGWCC 1 cut(s) 177
BalI TGGCCA 1 cut(s) 460
BanII GRGCYC 3 cut(s) 11, 30, 186
BbrPI CACGTG 1 cut(s) 677
Bbv12I GWGCWC 2 cut(s) 11, 186
BbvI GCAGC 4 cut(s) 26, 46, 267, 289
BceAI ACGGC 1 cut(s) 358
BcgI CGANNNNNNTGC 2 cut(s) 60, 94
BciT130I CCWGG 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 363
BfmI CTRYAG 1 cut(s) 40
BfuAI ACCTGC 1 cut(s) 278
BglII AGATCT 1 cut(s) 475
BisI GCNGC 4 cut(s) 40, 60, 278, 281
BlpI GCTNAGC 1 cut(s) 185
BlsI GCNGC 4 cut(s) 41, 61, 279, 282
Bme1390I CCNGG 1 cut(s) 174
Bme18I GGWCC 1 cut(s) 177
BmgT120I GGNCC 1 cut(s) 177
BmiI GGNNCC 3 cut(s) 27, 98, 178
BmrFI CCNGG 1 cut(s) 174
BmsI GCATC 1 cut(s) 712
Bpu1102I GCTNAGC 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 731
BsaAI YACGTR 1 cut(s) 677
BsaBI GATNNNNATC 1 cut(s) 558
BsaJI CCNNGG 3 cut(s) 173, 461, 600
BsaWI WCCGGW 3 cut(s) 99, 217, 361
BsaXI ACNNNNNCTCC 2 cut(s) 238, 268
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 308, 656
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 2 cut(s) 555, 618
Bse8I GATNNNNATC 1 cut(s) 558
BseAI TCCGGA 3 cut(s) 99, 217, 361
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 3 cut(s) 173, 461, 600
BseGI GGATG 2 cut(s) 160, 649
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 3 cut(s) 35, 308, 656
BseMII CTCAG 2 cut(s) 24, 199
BseNI ACTGG 2 cut(s) 555, 618
BseRI GAGGAG 1 cut(s) 262
BseXI GCAGC 4 cut(s) 26, 46, 267, 289
BsgI GTGCAG 2 cut(s) 296, 699
BshFI GGCC 1 cut(s) 460
BsiHKAI GWGCWC 2 cut(s) 11, 186
BsiSI CCGG 4 cut(s) 56, 100, 218, 362
BslFI GGGAC 2 cut(s) 190, 740
BslI CCNNNNNNNGG 3 cut(s) 35, 308, 656
BsmAI GTCTC 1 cut(s) 363
BsmFI GGGAC 2 cut(s) 190, 740
BsnI GGCC 1 cut(s) 460
Bsp1286I GDGCHC 3 cut(s) 11, 30, 186
Bsp13I TCCGGA 3 cut(s) 99, 217, 361
Bsp143I GATC 4 cut(s) 475, 543, 559, 742
Bsp1720I GCTNAGC 1 cut(s) 185
BspACI CCGC 3 cut(s) 47, 170, 258
BspANI GGCC 1 cut(s) 460
BspCNI CTCAG 2 cut(s) 23, 198
BspEI TCCGGA 3 cut(s) 99, 217, 361
BspLI GGNNCC 3 cut(s) 27, 98, 178
BspMAI CTGCAG 1 cut(s) 44
BspMI ACCTGC 1 cut(s) 278
BspPI GGATC 2 cut(s) 551, 554
BspQI GCTCTTC 1 cut(s) 218
BsrBI CCGCTC 1 cut(s) 49
BsrFI RCCGGY 1 cut(s) 55
BsrI ACTGG 2 cut(s) 555, 618
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 3 cut(s) 173, 461, 600
BssMI GATC 4 cut(s) 475, 543, 559, 742
BssT1I CCWWGG 2 cut(s) 461, 600
Bst2UI CCWGG 1 cut(s) 174
Bst6I CTCTTC 1 cut(s) 218
BstBAI YACGTR 1 cut(s) 677
BstC8I GCNNGC 3 cut(s) 7, 285, 347
BstDEI CTNAG 3 cut(s) 10, 185, 572
BstF5I GGATG 2 cut(s) 160, 649
BstKTI GATC 4 cut(s) 478, 546, 562, 745
BstMAI GTCTC 1 cut(s) 363
BstMBI GATC 4 cut(s) 475, 543, 559, 742
BstMWI GCNNNNNNNGC 2 cut(s) 68, 700
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 172
BstSFI CTRYAG 1 cut(s) 40
BstV1I GCAGC 4 cut(s) 26, 46, 267, 289
BstX2I RGATCY 2 cut(s) 475, 559
BstYI RGATCY 2 cut(s) 475, 559
BsuRI GGCC 1 cut(s) 460
BtsCI GGATG 2 cut(s) 160, 649
BtsIMutI CAGTG 1 cut(s) 548
BveI ACCTGC 1 cut(s) 278
Cac8I GCNNGC 3 cut(s) 7, 285, 347
Cfr10I RCCGGY 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 177
Csp6I GTAC 1 cut(s) 617
CviAII CATG 1 cut(s) 740
CviQI GTAC 1 cut(s) 617
DdeI CTNAG 3 cut(s) 10, 185, 572
DpnI GATC 4 cut(s) 477, 545, 561, 744
DpnII GATC 4 cut(s) 475, 543, 559, 742
DraI TTTAAA 1 cut(s) 294
EaeI YGGCCR 1 cut(s) 458
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Ecl136II GAGCTC 2 cut(s) 9, 184
Eco130I CCWWGG 2 cut(s) 461, 600
Eco24I GRGCYC 3 cut(s) 11, 30, 186
Eco47I GGWCC 1 cut(s) 177
Eco53kI GAGCTC 2 cut(s) 9, 184
Eco57I CTGAAG 2 cut(s) 291, 719
Eco72I CACGTG 1 cut(s) 677
EcoICRI GAGCTC 2 cut(s) 9, 184
EcoRII CCWGG 1 cut(s) 172
EcoT14I CCWWGG 2 cut(s) 461, 600
EcoT38I GRGCYC 3 cut(s) 11, 30, 186
ErhI CCWWGG 2 cut(s) 461, 600
FaeI CATG 1 cut(s) 743
FaiI YATR 3 cut(s) 333, 725, 741
FaqI GGGAC 2 cut(s) 190, 740
FatI CATG 1 cut(s) 739
Fnu4HI GCNGC 4 cut(s) 40, 60, 278, 281
FokI GGATG 2 cut(s) 167, 656
FriOI GRGCYC 3 cut(s) 11, 30, 186
Fsp4HI GCNGC 4 cut(s) 40, 60, 278, 281
GluI GCNGC 4 cut(s) 40, 60, 278, 281
HaeIII GGCC 1 cut(s) 460
HapII CCGG 4 cut(s) 56, 100, 218, 362
Hin1II CATG 1 cut(s) 743
HinfI GANTC 4 cut(s) 322, 352, 365, 493
HpaII CCGG 4 cut(s) 56, 100, 218, 362
Hpy188I TCNGA 1 cut(s) 321
Hpy188III TCNNGA 5 cut(s) 100, 218, 362, 407, 662
Hpy99I CGWCG 1 cut(s) 594
HpyAV CCTTC 4 cut(s) 93, 200, 481, 664
HpyCH4IV ACGT 2 cut(s) 589, 676
HpyCH4V TGCA 4 cut(s) 42, 277, 287, 680
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 700
HpyF3I CTNAG 3 cut(s) 10, 185, 572
HpySE526I ACGT 2 cut(s) 589, 676
Hsp92II CATG 1 cut(s) 743
Kpn2I TCCGGA 3 cut(s) 99, 217, 361
Kzo9I GATC 4 cut(s) 475, 543, 559, 742
LguI GCTCTTC 1 cut(s) 218
LmnI GCTCC 2 cut(s) 25, 54
Lsp1109I GCAGC 4 cut(s) 26, 46, 267, 289
LweI GCATC 1 cut(s) 712
MaeII ACGT 2 cut(s) 589, 676
MaeIII GTNAC 1 cut(s) 445
MalI GATC 4 cut(s) 477, 545, 561, 744
MbiI CCGCTC 1 cut(s) 49
MboI GATC 4 cut(s) 475, 543, 559, 742
MboII GAAGA 2 cut(s) 235, 470
MflI RGATCY 2 cut(s) 475, 559
MhlI GDGCHC 3 cut(s) 11, 30, 186
MlsI TGGCCA 1 cut(s) 460
MluCI AATT 5 cut(s) 119, 315, 523, 606, 716
MluNI TGGCCA 1 cut(s) 460
MmeI TCCRAC 2 cut(s) 71, 76
MnlI CCTC 6 cut(s) 73, 87, 240, 405, 518, 660
Mox20I TGGCCA 1 cut(s) 460
MroI TCCGGA 3 cut(s) 99, 217, 361
MscI TGGCCA 1 cut(s) 460
MseI TTAA 4 cut(s) 293, 522, 536, 719
Msp20I TGGCCA 1 cut(s) 460
MspA1I CMGCKG 1 cut(s) 280
MspI CCGG 4 cut(s) 56, 100, 218, 362
MspR9I CCNGG 1 cut(s) 174
MssI GTTTAAAC 1 cut(s) 294
MvaI CCWGG 1 cut(s) 174
MwoI GCNNNNNNNGC 2 cut(s) 68, 700
NdeII GATC 4 cut(s) 475, 543, 559, 742
NlaIII CATG 1 cut(s) 743
NlaIV GGNNCC 3 cut(s) 27, 98, 178
PciSI GCTCTTC 1 cut(s) 218
PfeI GAWTC 4 cut(s) 322, 352, 365, 493
PkrI GCNGC 4 cut(s) 41, 61, 279, 282
PmaCI CACGTG 1 cut(s) 677
PmeI GTTTAAAC 1 cut(s) 294
PmlI CACGTG 1 cut(s) 677
Ppu21I YACGTR 1 cut(s) 677
PshBI ATTAAT 1 cut(s) 522
Psp124BI GAGCTC 2 cut(s) 11, 186
Psp6I CCWGG 1 cut(s) 172
PspCI CACGTG 1 cut(s) 677
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 3 cut(s) 27, 98, 178
PspPI GGNCC 1 cut(s) 177
PstI CTGCAG 1 cut(s) 44
PsuI RGATCY 2 cut(s) 475, 559
PvuII CAGCTG 1 cut(s) 280
RsaI GTAC 1 cut(s) 618
RsaNI GTAC 1 cut(s) 617
SacI GAGCTC 2 cut(s) 11, 186
SapI GCTCTTC 1 cut(s) 218
SaqAI TTAA 4 cut(s) 293, 522, 536, 719
SatI GCNGC 4 cut(s) 40, 60, 278, 281
Sau3AI GATC 4 cut(s) 475, 543, 559, 742
Sau96I GGNCC 1 cut(s) 177
ScrFI CCNGG 1 cut(s) 174
SduI GDGCHC 3 cut(s) 11, 30, 186
SfaNI GCATC 1 cut(s) 712
SfcI CTRYAG 1 cut(s) 40
SinI GGWCC 1 cut(s) 177
SmlI CTYRAG 1 cut(s) 746
SmoI CTYRAG 1 cut(s) 746
Sse9I AATT 5 cut(s) 119, 315, 523, 606, 716
SsiI CCGC 3 cut(s) 47, 170, 258
SstI GAGCTC 2 cut(s) 11, 186
StyD4I CCNGG 1 cut(s) 172
StyI CCWWGG 2 cut(s) 461, 600
TaiI ACGT 2 cut(s) 592, 679
TaqI TCGA 1 cut(s) 502
TaqII GACCGA 1 cut(s) 194
TasI AATT 5 cut(s) 119, 315, 523, 606, 716
TfiI GAWTC 4 cut(s) 322, 352, 365, 493
Tru1I TTAA 4 cut(s) 293, 522, 536, 719
Tru9I TTAA 4 cut(s) 293, 522, 536, 719
TscAI CASTG 1 cut(s) 555
TseI GCWGC 4 cut(s) 39, 59, 277, 280
TspDTI ATGAA 3 cut(s) 456, 500, 660
TspRI CASTG 1 cut(s) 555
VpaK11BI GGWCC 1 cut(s) 177
VspI ATTAAT 1 cut(s) 522
XapI RAATTY 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.