AT5G14140

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015470
Physical Location & Seq
Forward (+)
4561449 .. 4563893
2445 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G14140.1

Sequence Viewer

Length: 795 bp
ATGGCTACGGGTATGGCGGTAGATACGGTAGGCGAGTTAGGCTTTCCGTACTGGAACCCAATCCGACGAAGATTTCCTCCGGATTCGCCGTTCTTTGCATCTGGAAATGTCGAGCGCGAGCTACTTGCTAAACAGGTGACATTGGACTTCACAGAAGATGAAATCAACCATCTGCATAAATTTGTGGAAATTGAAACCAGAAGAATCTCGTGTCCCATTGTTGGCTGTCCTGAACGCCTGAAATCTTTGGACCATTTTGAAGATCACTATAATGCACGGCACACTGCCTCTTGTTCAGTGTGCTCAAGGGTCTACCCTACTTCTCGCTTACTAAGTATTCACATATCCGAAGCACACGACTCTTTCTTTCAAGCTAAAGTTTCTCGGGGTTATGACATGTATGAGTGCCTTGTGGAAGGGTGTGGATTGAAGTTCAAGACCTACAAAGCCCGGCATCGACACTTGATTGACAAACACAAGTTCCCAACGACATTTGAATTCTTCAAGAAGACCCAACTCTCAAAGAAGCGTAGAGAGAAACTTCAAAGGCAACATGTATCAAAGCTGAAACATGAAGAAGACAAAGAAGCTGCTTCGTCAGATGCCATGGAAGTAGAAGACAAAGGCAGCTTAGACGGTCTTGTTTCAGCACTGTCCTCGCTAACTACCTCAGACACAACTCCTTCGAATGTCAGCTTCGGTCGACGCCATGGTCGTGGGCTGACCTTTGTTCCACGGTCTGTTCATAGAGAGAAACGGACCGAATCTTCGTCTGCACCAGGACCAACTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2

Protein Analysis

264

Amino Acids

30.1

Weight (kDa)

8.97

Isoelectric Point (pI)

58.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14140
fragaria_vesca FvH4_6g53600
malus_domestica MD09G1010100.v1.1 MD17G1000600.v1.1
prunus_persica Prupe.3G307100_v2.0.a1
pyrus_communis pycom17g00830
rosa_chinensis RchiOBHm_Chr2g0175731
rosa_laevigata RLG00000022353
rosa_multiflora Rmu_sc0000998.1_g000012
rosa_roxburghii Rroxscaffold_2G00077110
rosa_rugosa Rorug02G0587300
rosa_samantha Rh2AG666200 Rh2BG677400 Rh2CG640700 Rh2DG691300
rosa_wichuraiana Rw2G054630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 711
AccI GTMKAC 2 cut(s) 312, 703
AccII CGCG 1 cut(s) 117
AccIII TCCGGA 1 cut(s) 79
AciI CCGC 1 cut(s) 17
AcsI RAATTY 2 cut(s) 179, 497
AcyI GRCGYC 1 cut(s) 706
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 221
AflIII ACRYGT 2 cut(s) 396, 553
AgsI TTSAA 8 cut(s) 194, 260, 371, 430, 436, 497, 505, 545
AjnI CCWGG 1 cut(s) 778
AloI GAACNNNNNNTCC 2 cut(s) 74, 106
AluBI AGCT 6 cut(s) 121, 374, 565, 590, 630, 696
AluI AGCT 6 cut(s) 121, 374, 565, 590, 630, 696
Alw21I GWGCWC 1 cut(s) 305
Ama87I CYCGRG 1 cut(s) 384
Aor13HI TCCGGA 1 cut(s) 79
ApeKI GCWGC 2 cut(s) 590, 627
ApoI RAATTY 2 cut(s) 179, 497
ArsI GACNNNNNNTTYG 2 cut(s) 751, 783
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 3 cut(s) 250, 759, 782
AsuC2I CCSGG 1 cut(s) 451
AsuHPI GGTGA 1 cut(s) 148
AsuII TTCGAA 1 cut(s) 686
AvaI CYCGRG 1 cut(s) 384
AvaII GGWCC 3 cut(s) 250, 759, 782
BauI CACGAG 1 cut(s) 208
BbsI GAAGAC 3 cut(s) 515, 585, 624
Bbv12I GWGCWC 1 cut(s) 305
BbvI GCAGC 2 cut(s) 577, 639
BccI CCATC 1 cut(s) 177
BceAI ACGGC 2 cut(s) 73, 293
BcgI CGANNNNNNTGC 4 cut(s) 107, 141, 639, 673
BciT130I CCWGG 1 cut(s) 780
BcnI CCSGG 1 cut(s) 451
BisI GCNGC 2 cut(s) 591, 628
BlsI GCNGC 2 cut(s) 592, 629
Bme1390I CCNGG 2 cut(s) 451, 780
Bme18I GGWCC 3 cut(s) 250, 759, 782
BmeT110I CYCGRG 1 cut(s) 384
BmgT120I GGNCC 3 cut(s) 250, 759, 782
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 2 cut(s) 451, 780
BmsI GCATC 3 cut(s) 107, 463, 592
BpiI GAAGAC 3 cut(s) 515, 585, 624
Bpu14I TTCGAA 1 cut(s) 686
BpuEI CTTGAG 1 cut(s) 289
BpuMI CCSGG 1 cut(s) 451
BsaHI GRCGYC 1 cut(s) 706
BsaJI CCNNGG 3 cut(s) 606, 709, 734
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse1I ACTGG 1 cut(s) 56
BseAI TCCGGA 1 cut(s) 79
BseBI CCWGG 1 cut(s) 780
BseDI CCNNGG 3 cut(s) 606, 709, 734
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMII CTCAG 1 cut(s) 684
BseNI ACTGG 1 cut(s) 56
BseXI GCAGC 2 cut(s) 577, 639
BsgI GTGCAG 1 cut(s) 759
Bsh1236I CGCG 1 cut(s) 117
Bsh1285I CGRYCG 1 cut(s) 703
BsiEI CGRYCG 1 cut(s) 703
BsiHKAI GWGCWC 1 cut(s) 305
BsiHKCI CYCGRG 1 cut(s) 384
BsiSI CCGG 2 cut(s) 80, 451
BslFI GGGAC 1 cut(s) 198
BslI CCNNNNNNNGG 1 cut(s) 221
BsmFI GGGAC 1 cut(s) 198
BsoBI CYCGRG 1 cut(s) 384
Bsp119I TTCGAA 1 cut(s) 686
Bsp1286I GDGCHC 1 cut(s) 305
Bsp13I TCCGGA 1 cut(s) 79
Bsp143I GATC 1 cut(s) 262
Bsp19I CCATGG 2 cut(s) 606, 709
BspACI CCGC 1 cut(s) 17
BspCNI CTCAG 1 cut(s) 683
BspEI TCCGGA 1 cut(s) 79
BspFNI CGCG 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 56
BspT104I TTCGAA 1 cut(s) 686
BsrI ACTGG 1 cut(s) 56
BssECI CCNNGG 3 cut(s) 606, 709, 734
BssMI GATC 1 cut(s) 262
BssNI GRCGYC 1 cut(s) 706
BssSI CACGAG 1 cut(s) 208
BssT1I CCWWGG 2 cut(s) 606, 709
Bst2BI CACGAG 1 cut(s) 208
Bst2UI CCWGG 1 cut(s) 780
Bst4CI ACNGT 4 cut(s) 28, 638, 654, 738
BstACI GRCGYC 1 cut(s) 706
BstBI TTCGAA 1 cut(s) 686
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 3 cut(s) 332, 631, 670
BstDSI CCRYGG 3 cut(s) 606, 709, 734
BstFNI CGCG 1 cut(s) 117
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 1 cut(s) 265
BstMBI GATC 1 cut(s) 262
BstMCI CGRYCG 1 cut(s) 703
BstMWI GCNNNNNNNGC 1 cut(s) 39
BstNI CCWGG 1 cut(s) 780
BstNSI RCATGY 2 cut(s) 400, 557
BstSCI CCNGG 2 cut(s) 449, 778
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 2 cut(s) 577, 639
BstV2I GAAGAC 3 cut(s) 515, 585, 624
BstXI CCANNNNNNTGG 1 cut(s) 716
BtgI CCRYGG 3 cut(s) 606, 709, 734
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 3 cut(s) 282, 303, 650
Cac8I GCNNGC 1 cut(s) 119
CfoI GCGC 1 cut(s) 117
Cfr13I GGNCC 3 cut(s) 250, 759, 782
CpoI CGGWCCG 1 cut(s) 759
CseI GACGC 1 cut(s) 714
Csp6I GTAC 1 cut(s) 49
CspI CGGWCCG 1 cut(s) 759
CviAII CATG 5 cut(s) 397, 554, 572, 607, 710
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 3 cut(s) 332, 631, 670
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
DrdI GACNNNNNNGTC 1 cut(s) 711
DseDI GACNNNNNNGTC 1 cut(s) 711
Eco130I CCWWGG 2 cut(s) 606, 709
Eco47I GGWCC 3 cut(s) 250, 759, 782
Eco88I CYCGRG 1 cut(s) 384
EcoRI GAATTC 1 cut(s) 497
EcoRII CCWGG 1 cut(s) 778
EcoT14I CCWWGG 2 cut(s) 606, 709
ErhI CCWWGG 2 cut(s) 606, 709
FaeI CATG 5 cut(s) 400, 557, 575, 610, 713
FaqI GGGAC 1 cut(s) 198
FatI CATG 5 cut(s) 396, 553, 571, 606, 709
FblI GTMKAC 2 cut(s) 312, 703
Fnu4HI GCNGC 2 cut(s) 591, 628
Fsp4HI GCNGC 2 cut(s) 591, 628
GlaI GCGC 1 cut(s) 116
GluI GCNGC 2 cut(s) 591, 628
HapII CCGG 2 cut(s) 80, 451
HgaI GACGC 1 cut(s) 714
HhaI GCGC 1 cut(s) 117
Hin1I GRCGYC 1 cut(s) 706
Hin1II CATG 5 cut(s) 400, 557, 575, 610, 713
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HincII GTYRAC 1 cut(s) 704
HindII GTYRAC 1 cut(s) 704
HinfI GANTC 4 cut(s) 83, 204, 359, 764
HpaII CCGG 2 cut(s) 80, 451
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 2 cut(s) 313, 704
Hpy188I TCNGA 4 cut(s) 65, 349, 601, 673
Hpy188III TCNNGA 5 cut(s) 80, 102, 230, 436, 505
Hpy8I GTNNAC 2 cut(s) 313, 704
Hpy99I CGWCG 2 cut(s) 69, 708
HpyAV CCTTC 2 cut(s) 410, 693
HpyCH4III ACNGT 4 cut(s) 28, 638, 654, 738
HpyCH4V TGCA 4 cut(s) 98, 175, 275, 776
HpyF10VI GCNNNNNNNGC 1 cut(s) 39
HpyF3I CTNAG 3 cut(s) 332, 631, 670
Hsp92I GRCGYC 1 cut(s) 706
Hsp92II CATG 5 cut(s) 400, 557, 575, 610, 713
HspAI GCGC 1 cut(s) 115
Kpn2I TCCGGA 1 cut(s) 79
Kzo9I GATC 1 cut(s) 262
LpnPI CCDG 9 cut(s) 37, 87, 93, 119, 211, 243, 251, 464, 765
Lsp1109I GCAGC 2 cut(s) 577, 639
LweI GCATC 3 cut(s) 107, 463, 592
MaeIII GTNAC 1 cut(s) 136
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MhlI GDGCHC 1 cut(s) 305
MluCI AATT 4 cut(s) 179, 189, 497, 790
MlyI GAGTC 1 cut(s) 353
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 4 cut(s) 87, 298, 667, 679
MroI TCCGGA 1 cut(s) 79
MslI CAYNNNNRTG 2 cut(s) 270, 714
MspI CCGG 2 cut(s) 80, 451
MspR9I CCNGG 2 cut(s) 451, 780
MvaI CCWGG 1 cut(s) 780
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 39
NciI CCSGG 1 cut(s) 451
NcoI CCATGG 2 cut(s) 606, 709
NdeII GATC 1 cut(s) 262
NlaIII CATG 5 cut(s) 400, 557, 575, 610, 713
NlaIV GGNNCC 1 cut(s) 56
NmuCI GTSAC 1 cut(s) 136
NspI RCATGY 2 cut(s) 400, 557
NspV TTCGAA 1 cut(s) 686
PciI ACATGT 2 cut(s) 396, 553
PcsI WCGNNNNNNNCGW 1 cut(s) 712
PfeI GAWTC 3 cut(s) 83, 204, 764
PkrI GCNGC 2 cut(s) 592, 629
PleI GAGTC 1 cut(s) 353
PpsI GAGTC 1 cut(s) 353
PscI ACATGT 2 cut(s) 396, 553
Psp6I CCWGG 1 cut(s) 778
PspGI CCWGG 1 cut(s) 778
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 3 cut(s) 250, 759, 782
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
RseI CAYNNNNRTG 2 cut(s) 270, 714
Rsr2I CGGWCCG 1 cut(s) 759
RsrII CGGWCCG 1 cut(s) 759
SalI GTCGAC 1 cut(s) 702
SatI GCNGC 2 cut(s) 591, 628
Sau3AI GATC 1 cut(s) 262
Sau96I GGNCC 3 cut(s) 250, 759, 782
SchI GAGTC 1 cut(s) 353
ScrFI CCNGG 2 cut(s) 451, 780
SduI GDGCHC 1 cut(s) 305
SfaNI GCATC 3 cut(s) 107, 463, 592
SfuI TTCGAA 1 cut(s) 686
SinI GGWCC 3 cut(s) 250, 759, 782
SmiMI CAYNNNNRTG 2 cut(s) 270, 714
SmlI CTYRAG 1 cut(s) 304
SmoI CTYRAG 1 cut(s) 304
Sse9I AATT 4 cut(s) 179, 189, 497, 790
SsiI CCGC 1 cut(s) 17
StyD4I CCNGG 2 cut(s) 449, 778
StyI CCWWGG 2 cut(s) 606, 709
TaaI ACNGT 4 cut(s) 28, 638, 654, 738
TaqI TCGA 4 cut(s) 111, 457, 686, 703
TaqII GACCGA 2 cut(s) 689, 776
TasI AATT 4 cut(s) 179, 189, 497, 790
TfiI GAWTC 3 cut(s) 83, 204, 764
TscAI CASTG 3 cut(s) 289, 303, 657
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 2 cut(s) 590, 627
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 3 cut(s) 174, 588, 734
TspGWI ACGGA 2 cut(s) 36, 772
TspRI CASTG 3 cut(s) 289, 303, 657
VpaK11BI GGWCC 3 cut(s) 250, 759, 782
XapI RAATTY 2 cut(s) 179, 497
XceI RCATGY 2 cut(s) 400, 557
XmiI GTMKAC 2 cut(s) 312, 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.