Rorug02G0587300

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0015470
Physical Location & Seq
Reverse (-)
71004748 .. 71005323
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0587300.1

Sequence Viewer

Length: 576 bp
ATGGAGAAGACATCATCAACATCCTCTTCACCATTTCTTGTTTTGATTGGTACAATCTTGTTACAATCGATTGCTAACTGGTTACGTAGAATTCAGGAGCTCTTTTTTAGATTTCAGTCTTTTCTCCTATTCCAGTATACCTGTGATAACTCAAAGGTTCGGGATGAGAAGAACTTGGATTCGGAGTTGAGCCAGCTGCCAAAGCTATGTGAAAAGAAGGATGATGGTAGCTTGAGCAGAGAAGATGTGAACATGGTGATGGGAAACTTGGGAATTTTTTGCAGTTCAGAAGGGGAGGAACTACCTGAATCATTCTGTTCTGCTGAGCTTTCAGGGCTGTTTGATGAGAATGAGCCGAGCTTGGAGGAAGTCAAACAAGCTTTTGATGTGTTTGATGAGAACAAGGATGGGTTTATCGATGCAAGAGAGTTGCAGAGAGTTCTCTGTATATTGGGCTTGAAGGAAGGTTCAAAGCTAGAAGACTGCCAGAAAATGATCGAGACATTTGATGAAAACAGAGATGGAAGGATAGAGTTCTTTGAATTTGTAAAATTTATGGAGGCTAGCTTTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2

Protein Analysis

191

Amino Acids

21.96

Weight (kDa)

4.41

Isoelectric Point (pI)

56.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 122 - 186 6.9e-14 EF-hand domain pair
EF-hand_1 PF00036 123 - 148 2.2e-06 EF hand domain
EF-hand_6 PF13405 123 - 152 5.9e-07 EF-hand domain
EF-hand_5 PF13202 125 - 148 4e-07 EF hand
EF-hand_8 PF13833 139 - 187 4.3e-07 EF-hand domain pair
EF-hand_1 PF00036 161 - 187 4.6e-06 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14140
fragaria_vesca FvH4_6g53600
malus_domestica MD09G1010100.v1.1 MD17G1000600.v1.1
prunus_persica Prupe.3G307100_v2.0.a1
pyrus_communis pycom17g00830
rosa_chinensis RchiOBHm_Chr2g0175731
rosa_laevigata RLG00000022353
rosa_multiflora Rmu_sc0000998.1_g000012
rosa_roxburghii Rroxscaffold_2G00077110
rosa_rugosa Rorug02G0587300
rosa_samantha Rh2AG666200 Rh2BG677400 Rh2CG640700 Rh2DG691300
rosa_wichuraiana Rw2G054630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 137
AcsI RAATTY 4 cut(s) 90, 273, 542, 551
AfaI GTAC 1 cut(s) 52
AgsI TTSAA 3 cut(s) 460, 471, 542
AluBI AGCT 9 cut(s) 100, 196, 205, 231, 328, 360, 380, 475, 567
AluI AGCT 9 cut(s) 100, 196, 205, 231, 328, 360, 380, 475, 567
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 1 cut(s) 494
ApeKI GCWGC 1 cut(s) 196
ApoI RAATTY 4 cut(s) 90, 273, 542, 551
AsuHPI GGTGA 2 cut(s) 21, 268
AsuNHI GCTAGC 1 cut(s) 563
BanII GRGCYC 1 cut(s) 102
BbsI GAAGAC 2 cut(s) 14, 486
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 183
BccI CCATC 4 cut(s) 218, 253, 401, 515
BcoDI GTCTC 1 cut(s) 494
BfaI CTAG 2 cut(s) 476, 564
BisI GCNGC 1 cut(s) 197
BlpI GCTNAGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 198
BmsI GCATC 1 cut(s) 409
BmtI GCTAGC 1 cut(s) 567
BpiI GAAGAC 2 cut(s) 14, 486
Bpu1102I GCTNAGC 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 253
Bsa29I ATCGAT 2 cut(s) 68, 417
BsaAI YACGTR 1 cut(s) 86
Bse1I ACTGG 2 cut(s) 83, 133
BseCI ATCGAT 2 cut(s) 68, 417
BseGI GGATG 4 cut(s) 20, 169, 226, 412
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 2 cut(s) 83, 133
BseXI GCAGC 1 cut(s) 183
BshVI ATCGAT 2 cut(s) 68, 417
BsiHKAI GWGCWC 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 494
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 495
Bsp1720I GCTNAGC 1 cut(s) 324
BspCNI CTCAG 1 cut(s) 316
BspDI ATCGAT 2 cut(s) 68, 417
BspOI GCTAGC 1 cut(s) 567
BsrI ACTGG 2 cut(s) 83, 133
BssMI GATC 1 cut(s) 495
BssNAI GTATAC 1 cut(s) 138
Bst1107I GTATAC 1 cut(s) 138
Bst6I CTCTTC 1 cut(s) 31
BstBAI YACGTR 1 cut(s) 86
BstC8I GCNNGC 2 cut(s) 194, 565
BstDEI CTNAG 1 cut(s) 324
BstF5I GGATG 4 cut(s) 20, 169, 226, 412
BstKTI GATC 1 cut(s) 498
BstMAI GTCTC 1 cut(s) 494
BstMBI GATC 1 cut(s) 495
BstMWI GCNNNNNNNGC 2 cut(s) 202, 334
BstSNI TACGTA 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 183
BstV2I GAAGAC 2 cut(s) 14, 486
BstZ17I GTATAC 1 cut(s) 138
Bsu15I ATCGAT 2 cut(s) 68, 417
BsuTUI ATCGAT 2 cut(s) 68, 417
BtsCI GGATG 4 cut(s) 20, 169, 226, 412
Cac8I GCNNGC 2 cut(s) 194, 565
ClaI ATCGAT 2 cut(s) 68, 417
Csp6I GTAC 1 cut(s) 51
CviAII CATG 1 cut(s) 253
CviQI GTAC 1 cut(s) 51
DdeI CTNAG 1 cut(s) 324
DpnI GATC 1 cut(s) 497
DpnII GATC 1 cut(s) 495
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
Ecl136II GAGCTC 1 cut(s) 100
Eco105I TACGTA 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 100
EcoICRI GAGCTC 1 cut(s) 100
EcoRI GAATTC 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 102
FaeI CATG 1 cut(s) 256
FaiI YATR 5 cut(s) 138, 208, 254, 449, 557
FatI CATG 1 cut(s) 252
FblI GTMKAC 1 cut(s) 137
Fnu4HI GCNGC 1 cut(s) 197
FokI GGATG 4 cut(s) 7, 176, 233, 419
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 197
FspBI CTAG 2 cut(s) 476, 564
GluI GCNGC 1 cut(s) 197
Hin1II CATG 1 cut(s) 256
HindIII AAGCTT 1 cut(s) 378
HinfI GANTC 2 cut(s) 179, 308
HphI GGTGA 2 cut(s) 21, 268
Hpy166II GTNNAC 2 cut(s) 138, 250
Hpy188I TCNGA 2 cut(s) 184, 289
Hpy188III TCNNGA 3 cut(s) 95, 161, 499
Hpy8I GTNNAC 2 cut(s) 138, 250
HpyAV CCTTC 5 cut(s) 211, 284, 454, 458, 519
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 3 cut(s) 282, 422, 433
HpyF10VI GCNNNNNNNGC 2 cut(s) 202, 334
HpyF3I CTNAG 1 cut(s) 324
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 1 cut(s) 256
Kzo9I GATC 1 cut(s) 495
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 8 cut(s) 64, 80, 146, 154, 206, 318, 318, 500
Lsp1109I GCAGC 1 cut(s) 183
LweI GCATC 1 cut(s) 409
MaeI CTAG 2 cut(s) 476, 564
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 2 cut(s) 60, 81
MalI GATC 1 cut(s) 497
MboI GATC 1 cut(s) 495
MboII GAAGA 5 cut(s) 18, 19, 181, 254, 491
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 4 cut(s) 90, 273, 542, 551
MnlI CCTC 4 cut(s) 34, 289, 358, 553
MslI CAYNNNNRTG 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 196
MwoI GCNNNNNNNGC 2 cut(s) 202, 334
NdeII GATC 1 cut(s) 495
NheI GCTAGC 1 cut(s) 563
NlaIII CATG 1 cut(s) 256
NmeAIII GCCGAG 1 cut(s) 381
PfeI GAWTC 2 cut(s) 179, 308
PkrI GCNGC 1 cut(s) 198
Ppu21I YACGTR 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 102
PvuII CAGCTG 1 cut(s) 196
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
RseI CAYNNNNRTG 1 cut(s) 257
SacI GAGCTC 1 cut(s) 102
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 1 cut(s) 495
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 1 cut(s) 409
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
SnaBI TACGTA 1 cut(s) 86
Sse9I AATT 4 cut(s) 90, 273, 542, 551
SspMI CTAG 2 cut(s) 476, 564
SstI GAGCTC 1 cut(s) 102
TaiI ACGT 1 cut(s) 88
TaqI TCGA 3 cut(s) 68, 417, 498
TasI AATT 4 cut(s) 90, 273, 542, 551
TfiI GAWTC 2 cut(s) 179, 308
TseI GCWGC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 525
XapI RAATTY 4 cut(s) 90, 273, 542, 551
XmiI GTMKAC 1 cut(s) 137
XspI CTAG 2 cut(s) 476, 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.