Prupe.3G307100_v2.0.a1

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0015470
Physical Location & Seq
Reverse (-)
26812408 .. 26814702
2295 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G307100.1

Sequence Viewer

Length: 744 bp
ATGGCGTCGATGGATGTAGAAGGACCACAGTTAGGGTTTCCGCACTGGAAGCCTCTCCGTCGAAGGTTCGGCCCTGAATCTCCTTTTTTCGCATCTGGCAACATCGAAAGAGAACTGCTTGCCAAACAGCTTGCATTGGATTTAACTGAAGATGAAAGGCATCAACTTCGGAATATGGTAGATGAGGAAGGCAGGGGGGTTTTCTGTACCATTGTTGGTTGTGGTGCTCGCTTGAGTTCCTTGGAGGATTTTGAAGATCACTATAATGCACGGCACACTGCATCTTGTTCTGTGTGCTCTAGAGTCTACCCAACGTCACGGTTGCTCAGCTTACATTTATCTGAAGCTCATGATTCTTTCTTTCAGGCGAAAGTTGCACGCGGCTATCCCATGTATGAATGCCTTGTAGAAGGCTGTGATTTGAAGTTCAAGAACTATAAAAGTCGGCAACAGCATCTGGTGGACAAGCATAAATTCCCCACTTCATTCGAGTTTTTCAAGAAGGCTCAACCTTCCAAAAAACAGAGGCAGAAGAACCAACGTAAACAAGCTATTCCTAAGAAGGCAGATGCATCTTGTATGGAAGTAGAAAATGAAACCATTGATAGCCTTGTTTCTGCTGTCTCCAAATTAAGCACTTCAGACTCCAGCCCCTCATCCATCAGTTTTGGTCGTCGACCCACTCGCGGCTTGACATTTGTCCCACGAGCTGTTCAACGTGAGAAAAAGCCAGACTCCACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2

Protein Analysis

248

Amino Acids

28.06

Weight (kDa)

9.14

Isoelectric Point (pI)

58.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14140
fragaria_vesca FvH4_6g53600
malus_domestica MD09G1010100.v1.1 MD17G1000600.v1.1
prunus_persica Prupe.3G307100_v2.0.a1
pyrus_communis pycom17g00830
rosa_chinensis RchiOBHm_Chr2g0175731
rosa_laevigata RLG00000022353
rosa_multiflora Rmu_sc0000998.1_g000012
rosa_roxburghii Rroxscaffold_2G00077110
rosa_rugosa Rorug02G0587300
rosa_samantha Rh2AG666200 Rh2BG677400 Rh2CG640700 Rh2DG691300
rosa_wichuraiana Rw2G054630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 306, 676
AccII CGCG 2 cut(s) 381, 687
AciI CCGC 3 cut(s) 41, 381, 687
AcsI RAATTY 1 cut(s) 473
AcuI CTGAAG 3 cut(s) 168, 363, 624
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 208
AfiI CCNNNNNNNGG 2 cut(s) 32, 686
AgsI TTSAA 5 cut(s) 254, 424, 430, 499, 716
AluBI AGCT 5 cut(s) 130, 330, 347, 551, 710
AluI AGCT 5 cut(s) 130, 330, 347, 551, 710
Alw21I GWGCWC 2 cut(s) 229, 299
Alw26I GTCTC 1 cut(s) 628
AlwNI CAGNNNCTG 1 cut(s) 457
AoxI GGCC 1 cut(s) 70
ApoI RAATTY 1 cut(s) 473
AspS9I GGNCC 2 cut(s) 23, 71
AvaII GGWCC 1 cut(s) 23
BauI CACGAG 1 cut(s) 705
Bbv12I GWGCWC 2 cut(s) 229, 299
BccI CCATC 2 cut(s) 4, 668
BceAI ACGGC 1 cut(s) 287
BcgI CGANNNNNNTGC 2 cut(s) 149, 183
BcoDI GTCTC 1 cut(s) 628
BfaI CTAG 1 cut(s) 300
BisI GCNGC 2 cut(s) 382, 688
BlpI GCTNAGC 1 cut(s) 326
BlsI GCNGC 2 cut(s) 383, 689
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 2 cut(s) 23, 71
BmsI GCATC 6 cut(s) 101, 169, 290, 463, 559, 581
BoxI GACNNNNGTC 1 cut(s) 698
BpmI CTGGAG 1 cut(s) 631
Bpu1102I GCTNAGC 1 cut(s) 326
BpuEI CTTGAG 1 cut(s) 253
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 240
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 686
Bse1I ACTGG 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 2 cut(s) 19, 656
BseLI CCNNNNNNNGG 2 cut(s) 32, 686
BseMII CTCAG 1 cut(s) 340
BseNI ACTGG 1 cut(s) 50
Bsh1236I CGCG 2 cut(s) 381, 687
BshFI GGCC 1 cut(s) 72
BsiHKAI GWGCWC 2 cut(s) 229, 299
BslFI GGGAC 1 cut(s) 686
BslI CCNNNNNNNGG 2 cut(s) 32, 686
BsmAI GTCTC 1 cut(s) 628
BsmFI GGGAC 1 cut(s) 686
BsmI GAATGC 1 cut(s) 404
BsnI GGCC 1 cut(s) 72
Bsp1286I GDGCHC 2 cut(s) 229, 299
Bsp143I GATC 1 cut(s) 256
Bsp1720I GCTNAGC 1 cut(s) 326
BspACI CCGC 3 cut(s) 41, 381, 687
BspANI GGCC 1 cut(s) 72
BspCNI CTCAG 1 cut(s) 339
BspFNI CGCG 2 cut(s) 381, 687
BspHI TCATGA 1 cut(s) 349
BsrI ACTGG 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 1 cut(s) 256
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 705
BssT1I CCWWGG 1 cut(s) 240
Bst2BI CACGAG 1 cut(s) 705
Bst4CI ACNGT 2 cut(s) 30, 321
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 4 cut(s) 120, 132, 229, 379
BstDEI CTNAG 2 cut(s) 326, 558
BstF5I GGATG 2 cut(s) 19, 656
BstFNI CGCG 2 cut(s) 381, 687
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 1 cut(s) 628
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 2 cut(s) 49, 374
BstPAI GACNNNNGTC 1 cut(s) 698
BstUI CGCG 2 cut(s) 381, 687
BsuRI GGCC 1 cut(s) 72
BtsCI GGATG 2 cut(s) 19, 656
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 2 cut(s) 43, 276
Cac8I GCNNGC 4 cut(s) 120, 132, 229, 379
CaiI CAGNNNCTG 1 cut(s) 457
CciI TCATGA 1 cut(s) 349
Cfr13I GGNCC 2 cut(s) 23, 71
Csp6I GTAC 1 cut(s) 207
CviAII CATG 2 cut(s) 350, 391
CviQI GTAC 1 cut(s) 207
DdeI CTNAG 2 cut(s) 326, 558
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
Eco130I CCWWGG 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 23
Eco57I CTGAAG 3 cut(s) 168, 363, 624
EcoT14I CCWWGG 1 cut(s) 240
EcoT22I ATGCAT 1 cut(s) 574
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 2 cut(s) 353, 394
FaiI YATR 9 cut(s) 176, 264, 351, 392, 396, 438, 471, 581, 742
FaqI GGGAC 1 cut(s) 686
FatI CATG 2 cut(s) 349, 390
FblI GTMKAC 2 cut(s) 306, 676
Fnu4HI GCNGC 2 cut(s) 382, 688
FokI GGATG 2 cut(s) 26, 643
Fsp4HI GCNGC 2 cut(s) 382, 688
FspBI CTAG 1 cut(s) 300
GluI GCNGC 2 cut(s) 382, 688
GsuI CTGGAG 1 cut(s) 631
HaeIII GGCC 1 cut(s) 72
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 353, 394
HincII GTYRAC 1 cut(s) 677
HindII GTYRAC 1 cut(s) 677
HinfI GANTC 5 cut(s) 77, 303, 353, 644, 734
Hpy166II GTNNAC 4 cut(s) 307, 463, 545, 677
Hpy188I TCNGA 3 cut(s) 171, 343, 643
Hpy188III TCNNGA 4 cut(s) 300, 350, 430, 499
Hpy8I GTNNAC 4 cut(s) 307, 463, 545, 677
Hpy99I CGWCG 3 cut(s) 10, 63, 678
HpyAV CCTTC 7 cut(s) 14, 57, 182, 404, 496, 522, 556
HpyCH4III ACNGT 2 cut(s) 30, 321
HpyCH4IV ACGT 3 cut(s) 314, 541, 718
HpyCH4V TGCA 5 cut(s) 134, 269, 281, 377, 572
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 374
HpyF3I CTNAG 2 cut(s) 326, 558
HpySE526I ACGT 3 cut(s) 314, 541, 718
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 353, 394
Kzo9I GATC 1 cut(s) 256
LpnPI CCDG 7 cut(s) 31, 81, 87, 178, 350, 443, 661
LweI GCATC 6 cut(s) 101, 169, 290, 463, 559, 581
MaeI CTAG 1 cut(s) 300
MaeII ACGT 3 cut(s) 314, 541, 718
MaeIII GTNAC 1 cut(s) 315
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 3 cut(s) 161, 266, 544
MhlI GDGCHC 2 cut(s) 229, 299
MluCI AATT 2 cut(s) 473, 629
MlyI GAGTC 3 cut(s) 312, 638, 728
MnlI CCTC 5 cut(s) 63, 178, 238, 519, 664
Mph1103I ATGCAT 1 cut(s) 574
MseI TTAA 2 cut(s) 143, 632
MslI CAYNNNNRTG 1 cut(s) 264
Mva1269I GAATGC 1 cut(s) 404
MvnI CGCG 2 cut(s) 381, 687
MwoI GCNNNNNNNGC 2 cut(s) 49, 374
NdeII GATC 1 cut(s) 256
NlaIII CATG 2 cut(s) 353, 394
NmuCI GTSAC 1 cut(s) 315
NsiI ATGCAT 1 cut(s) 574
PagI TCATGA 1 cut(s) 349
PctI GAATGC 1 cut(s) 404
PfeI GAWTC 2 cut(s) 77, 353
PkrI GCNGC 2 cut(s) 383, 689
PleI GAGTC 3 cut(s) 311, 638, 728
PpsI GAGTC 3 cut(s) 311, 638, 728
PshAI GACNNNNGTC 1 cut(s) 698
PspPI GGNCC 2 cut(s) 23, 71
PstNI CAGNNNCTG 1 cut(s) 457
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
RseI CAYNNNNRTG 1 cut(s) 264
SalI GTCGAC 1 cut(s) 675
SaqAI TTAA 2 cut(s) 143, 632
SatI GCNGC 2 cut(s) 382, 688
Sau3AI GATC 1 cut(s) 256
Sau96I GGNCC 2 cut(s) 23, 71
SchI GAGTC 3 cut(s) 312, 638, 728
SduI GDGCHC 2 cut(s) 229, 299
SfaNI GCATC 6 cut(s) 101, 169, 290, 463, 559, 581
SinI GGWCC 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
Sse9I AATT 2 cut(s) 473, 629
SsiI CCGC 3 cut(s) 41, 381, 687
SspMI CTAG 1 cut(s) 300
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 2 cut(s) 30, 321
TaiI ACGT 3 cut(s) 317, 544, 721
TaqI TCGA 5 cut(s) 8, 61, 105, 489, 676
TasI AATT 2 cut(s) 473, 629
TauI GCSGC 2 cut(s) 384, 690
TfiI GAWTC 2 cut(s) 77, 353
Tru1I TTAA 2 cut(s) 143, 632
Tru9I TTAA 2 cut(s) 143, 632
TscAI CASTG 2 cut(s) 50, 283
TseFI GTSAC 1 cut(s) 315
Tsp45I GTSAC 1 cut(s) 315
TspDTI ATGAA 4 cut(s) 168, 411, 474, 609
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 2 cut(s) 50, 283
VpaK11BI GGWCC 1 cut(s) 23
XapI RAATTY 1 cut(s) 473
XbaI TCTAGA 1 cut(s) 299
XmiI GTMKAC 2 cut(s) 306, 676
XspI CTAG 1 cut(s) 300
Zsp2I ATGCAT 1 cut(s) 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.