MD17G1000600.v1.1

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0015470
Physical Location & Seq
Reverse (-)
28991 .. 31141
2151 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1000600.v1.1.491

Sequence Viewer

Length: 747 bp
ATGGCGTCGATGGATGGAGAAGAAGCACGACTGGGGTTTCCGCACTGGAAACCCCTCCGTCGAAGGTTTGCTCCTGAATCTCCTTTCTTCGCAACTGGAAACATCGAGAGGGAACTGCTCGCCAAACAGATTGCATTGGATTTAACCGAAGACGAAAAGCATCAGCTTCGAGAAATGGTAGATGAGGAAGGCAGGGGGGTTTTCTGTCCGATTGTTGGTTGCGGTGCTCGCTTGAGTTCCTTGGAGGACTTTGAAGATCACTACAATGCACGGCACACCGCGTCTTGTTCTGTGTGCTCTAGAGTCTATCCAACCTCACGGTTGCTCAGCATACATGTATCCGAAGCACACGATTCTTTCTTTCAGTCGAAAGTGGCACGCGGCTATCTCATGTATGAATGCCTTGTAGAAGGCTGTGGTCTGAAGTTCAAGAACTATAAAAGTCGGCAGCAACATCTGGTGGACAAGCATAAATTCCCCACTTCATTTGAGTTTTTCAAGAAGGCTCTTCCTTCCAAAAAGCAGAGGCAGAAGAAGAACCAACGGAGACAAGTTGTTTCAAAGAACGCAGATTCATCTAGTATGCAAGTAGATAACGAAACCATGGATGGCCTTGTTTCTGCCGTCTCCAAATTAAGCACATCAGACTCGACCCCTTCAGCCATCAGCTTTGGTCGTCGACCCACTCGTGCCGTGACATTCACCCCAAGAGCTGTTCAACGTGAGAAAAAACCGGACTCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2

Protein Analysis

249

Amino Acids

28.14

Weight (kDa)

9.3

Isoelectric Point (pI)

53.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14140
fragaria_vesca FvH4_6g53600
malus_domestica MD09G1010100.v1.1 MD17G1000600.v1.1
prunus_persica Prupe.3G307100_v2.0.a1
pyrus_communis pycom17g00830
rosa_chinensis RchiOBHm_Chr2g0175731
rosa_laevigata RLG00000022353
rosa_multiflora Rmu_sc0000998.1_g000012
rosa_roxburghii Rroxscaffold_2G00077110
rosa_rugosa Rorug02G0587300
rosa_samantha Rh2AG666200 Rh2BG677400 Rh2CG640700 Rh2DG691300
rosa_wichuraiana Rw2G054630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 679
AccII CGCG 2 cut(s) 281, 381
AciI CCGC 4 cut(s) 41, 222, 279, 381
AcsI RAATTY 1 cut(s) 473
AcuI CTGAAG 2 cut(s) 443, 642
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 215
AflIII ACRYGT 1 cut(s) 334
AgsI TTSAA 5 cut(s) 254, 430, 499, 561, 719
AluBI AGCT 3 cut(s) 166, 669, 713
AluI AGCT 3 cut(s) 166, 669, 713
Alw21I GWGCWC 2 cut(s) 229, 299
Alw26I GTCTC 2 cut(s) 541, 631
AoxI GGCC 1 cut(s) 610
ApeKI GCWGC 1 cut(s) 448
ApoI RAATTY 1 cut(s) 473
AsuHPI GGTGA 1 cut(s) 694
BauI CACGAG 1 cut(s) 687
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 2 cut(s) 229, 299
BbvI GCAGC 1 cut(s) 460
BccI CCATC 4 cut(s) 4, 8, 602, 671
BceAI ACGGC 3 cut(s) 287, 608, 677
BcgI CGANNNNNNTGC 2 cut(s) 149, 183
BciVI GTATCC 1 cut(s) 349
BcoDI GTCTC 2 cut(s) 541, 631
BfaI CTAG 2 cut(s) 300, 579
BfuI GTATCC 1 cut(s) 349
BisI GCNGC 2 cut(s) 382, 449
BlpI GCTNAGC 1 cut(s) 326
BlsI GCNGC 2 cut(s) 383, 450
BmrI ACTGGG 1 cut(s) 41
BmsI GCATC 1 cut(s) 169
BmuI ACTGGG 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 156
Bpu1102I GCTNAGC 1 cut(s) 326
BpuEI CTTGAG 1 cut(s) 253
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 240, 603
BsaWI WCCGGW 1 cut(s) 733
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse1I ACTGG 3 cut(s) 36, 50, 100
BseDI CCNNGG 2 cut(s) 240, 603
BseGI GGATG 2 cut(s) 19, 613
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMII CTCAG 1 cut(s) 340
BseNI ACTGG 3 cut(s) 36, 50, 100
BseXI GCAGC 1 cut(s) 460
Bsh1236I CGCG 2 cut(s) 281, 381
BshFI GGCC 1 cut(s) 612
BsiHKAI GWGCWC 2 cut(s) 229, 299
BsiSI CCGG 1 cut(s) 734
BslI CCNNNNNNNGG 1 cut(s) 215
BsmAI GTCTC 2 cut(s) 541, 631
BsmBI CGTCTC 1 cut(s) 631
BsmI GAATGC 1 cut(s) 404
BsnI GGCC 1 cut(s) 612
Bsp1286I GDGCHC 2 cut(s) 229, 299
Bsp143I GATC 1 cut(s) 256
Bsp1720I GCTNAGC 1 cut(s) 326
Bsp19I CCATGG 1 cut(s) 603
BspACI CCGC 4 cut(s) 41, 222, 279, 381
BspANI GGCC 1 cut(s) 612
BspCNI CTCAG 1 cut(s) 339
BspFNI CGCG 2 cut(s) 281, 381
BspQI GCTCTTC 1 cut(s) 513
BsrI ACTGG 3 cut(s) 36, 50, 100
BssECI CCNNGG 2 cut(s) 240, 603
BssMI GATC 1 cut(s) 256
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 687
BssT1I CCWWGG 2 cut(s) 240, 603
Bst2BI CACGAG 1 cut(s) 687
Bst4CI ACNGT 1 cut(s) 321
Bst6I CTCTTC 1 cut(s) 513
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 3 cut(s) 120, 229, 379
BstDEI CTNAG 1 cut(s) 326
BstDSI CCRYGG 1 cut(s) 603
BstF5I GGATG 2 cut(s) 19, 613
BstFNI CGCG 2 cut(s) 281, 381
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 2 cut(s) 541, 631
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 1 cut(s) 228
BstNSI RCATGY 1 cut(s) 338
BstUI CGCG 2 cut(s) 281, 381
BstV1I GCAGC 1 cut(s) 460
BstV2I GAAGAC 1 cut(s) 156
BsuI GTATCC 1 cut(s) 349
BsuRI GGCC 1 cut(s) 612
BtgI CCRYGG 1 cut(s) 603
BtsCI GGATG 2 cut(s) 19, 613
BtsIMutI CAGTG 1 cut(s) 43
Cac8I GCNNGC 3 cut(s) 120, 229, 379
CseI GACGC 1 cut(s) 270
CspCI CAANNNNNGTGG 2 cut(s) 469, 504
CviAII CATG 3 cut(s) 335, 391, 604
CviJI RGCY 8 cut(s) 166, 384, 414, 506, 612, 662, 669, 713
CviKI_1 RGCY 8 cut(s) 166, 384, 414, 506, 612, 662, 669, 713
DdeI CTNAG 1 cut(s) 326
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 513
Eco130I CCWWGG 2 cut(s) 240, 603
Eco57I CTGAAG 2 cut(s) 443, 642
EcoT14I CCWWGG 2 cut(s) 240, 603
ErhI CCWWGG 2 cut(s) 240, 603
Esp3I CGTCTC 1 cut(s) 631
FaeI CATG 3 cut(s) 338, 394, 607
FaiI YATR 9 cut(s) 332, 336, 392, 396, 438, 471, 584, 605, 745
FatI CATG 3 cut(s) 334, 390, 603
FblI GTMKAC 1 cut(s) 679
Fnu4HI GCNGC 2 cut(s) 382, 449
FokI GGATG 2 cut(s) 26, 620
Fsp4HI GCNGC 2 cut(s) 382, 449
FspBI CTAG 2 cut(s) 300, 579
GluI GCNGC 2 cut(s) 382, 449
HaeIII GGCC 1 cut(s) 612
HapII CCGG 1 cut(s) 734
HgaI GACGC 1 cut(s) 270
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 338, 394, 607
HincII GTYRAC 1 cut(s) 680
HindII GTYRAC 1 cut(s) 680
HinfI GANTC 6 cut(s) 77, 303, 353, 572, 647, 737
HpaII CCGG 1 cut(s) 734
HphI GGTGA 1 cut(s) 694
Hpy166II GTNNAC 2 cut(s) 463, 680
Hpy188I TCNGA 4 cut(s) 210, 343, 423, 646
Hpy188III TCNNGA 6 cut(s) 74, 106, 170, 300, 430, 499
Hpy8I GTNNAC 2 cut(s) 463, 680
Hpy99I CGWCG 3 cut(s) 10, 63, 681
HpyAV CCTTC 6 cut(s) 57, 182, 404, 496, 522, 666
HpyCH4III ACNGT 1 cut(s) 321
HpyCH4IV ACGT 1 cut(s) 721
HpyCH4V TGCA 4 cut(s) 134, 269, 586, 743
HpyF10VI GCNNNNNNNGC 1 cut(s) 228
HpyF3I CTNAG 1 cut(s) 326
HpySE526I ACGT 1 cut(s) 721
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 338, 394, 607
Kzo9I GATC 1 cut(s) 256
LguI GCTCTTC 1 cut(s) 513
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 6 cut(s) 17, 31, 81, 87, 178, 443
Lsp1109I GCAGC 1 cut(s) 460
LweI GCATC 1 cut(s) 169
MaeI CTAG 2 cut(s) 300, 579
MaeII ACGT 1 cut(s) 721
MaeIII GTNAC 1 cut(s) 694
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 7 cut(s) 32, 79, 161, 266, 500, 544, 547
MhlI GDGCHC 2 cut(s) 229, 299
MluCI AATT 2 cut(s) 473, 632
MlyI GAGTC 3 cut(s) 312, 641, 731
MmeI TCCRAC 1 cut(s) 335
MnlI CCTC 6 cut(s) 65, 102, 178, 238, 325, 519
MseI TTAA 2 cut(s) 143, 635
MslI CAYNNNNRTG 1 cut(s) 264
MspI CCGG 1 cut(s) 734
Mva1269I GAATGC 1 cut(s) 404
MvnI CGCG 2 cut(s) 281, 381
MwoI GCNNNNNNNGC 1 cut(s) 228
NcoI CCATGG 1 cut(s) 603
NdeII GATC 1 cut(s) 256
NlaIII CATG 3 cut(s) 338, 394, 607
NmuCI GTSAC 1 cut(s) 694
NspI RCATGY 1 cut(s) 338
PciI ACATGT 1 cut(s) 334
PciSI GCTCTTC 1 cut(s) 513
PcsI WCGNNNNNNNCGW 1 cut(s) 685
PctI GAATGC 1 cut(s) 404
PfeI GAWTC 3 cut(s) 77, 353, 572
PkrI GCNGC 2 cut(s) 383, 450
PleI GAGTC 3 cut(s) 311, 641, 731
PpsI GAGTC 3 cut(s) 311, 641, 731
PscI ACATGT 1 cut(s) 334
RseI CAYNNNNRTG 1 cut(s) 264
SalI GTCGAC 1 cut(s) 678
SapI GCTCTTC 1 cut(s) 513
SaqAI TTAA 2 cut(s) 143, 635
SatI GCNGC 2 cut(s) 382, 449
Sau3AI GATC 1 cut(s) 256
SchI GAGTC 3 cut(s) 312, 641, 731
SduI GDGCHC 2 cut(s) 229, 299
SetI ASST 6 cut(s) 68, 168, 317, 671, 715, 724
SfaNI GCATC 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
Sse9I AATT 2 cut(s) 473, 632
SsiI CCGC 4 cut(s) 41, 222, 279, 381
SspMI CTAG 2 cut(s) 300, 579
StyI CCWWGG 2 cut(s) 240, 603
TaaI ACNGT 1 cut(s) 321
TaiI ACGT 1 cut(s) 724
TaqI TCGA 7 cut(s) 8, 61, 105, 169, 368, 650, 679
TasI AATT 2 cut(s) 473, 632
TauI GCSGC 1 cut(s) 384
TfiI GAWTC 3 cut(s) 77, 353, 572
Tru1I TTAA 2 cut(s) 143, 635
Tru9I TTAA 2 cut(s) 143, 635
TscAI CASTG 1 cut(s) 50
TseFI GTSAC 1 cut(s) 694
TseI GCWGC 1 cut(s) 448
Tsp45I GTSAC 1 cut(s) 694
TspDTI ATGAA 3 cut(s) 411, 474, 564
TspGWI ACGGA 2 cut(s) 47, 559
TspRI CASTG 1 cut(s) 50
XapI RAATTY 1 cut(s) 473
XbaI TCTAGA 1 cut(s) 299
XceI RCATGY 1 cut(s) 338
XmiI GTMKAC 1 cut(s) 679
XspI CTAG 2 cut(s) 300, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.