Rmu_sc0000998.1_g000012

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000998.1
OG0015470
Physical Location & Seq
Forward (+)
47338 .. 48191
854 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000998.1_g000012.1.cds

Sequence Viewer

Length: 489 bp
atggcgatggaattagaattagggtttccgtactggaaagccctccgtcgaaagtttggtcctgaatctcccttctttgcatctggcaacctcgaaagggaattgctcgtcaaacagcttgcactggatttgactgaagatgaaaagcgggagcttcggaatttcgtggatgaggaaggcaggggtgttttctgtcccattgttggttgtggagctaaactgacttgcttggaggactttgaagatcattacaatgctcgtcacactgcatcttgctctgtgtgctctagagtctatccaacgtcccggctgctcagcattcatgtatctgaagcacacagttctttctttcaggccaaagtcgcacgtggtgatcccatggtatttcctgtttatgtcgttgtatgttggtgttgtctgaggaatgatgatgtgatacgtttttgttttccccctagatatgtgatgatgtgcttctgtctccgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2

Protein Analysis

162

Amino Acids

18.68

Weight (kDa)

6.42

Isoelectric Point (pI)

50.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14140
fragaria_vesca FvH4_6g53600
malus_domestica MD09G1010100.v1.1 MD17G1000600.v1.1
prunus_persica Prupe.3G307100_v2.0.a1
pyrus_communis pycom17g00830
rosa_chinensis RchiOBHm_Chr2g0175731
rosa_laevigata RLG00000022353
rosa_multiflora Rmu_sc0000998.1_g000012
rosa_roxburghii Rroxscaffold_2G00077110
rosa_rugosa Rorug02G0587300
rosa_samantha Rh2AG666200 Rh2BG677400 Rh2CG640700 Rh2DG691300
rosa_wichuraiana Rw2G054630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 148, 484
AclWI GGATC 1 cut(s) 368
AcsI RAATTY 1 cut(s) 160
AcuI CTGAAG 2 cut(s) 156, 351
AcvI CACGTG 1 cut(s) 368
AdeI CACNNNGTG 1 cut(s) 371
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 2 cut(s) 97, 203
AgsI TTSAA 1 cut(s) 242
AluBI AGCT 3 cut(s) 118, 154, 215
AluI AGCT 3 cut(s) 118, 154, 215
Alw21I GWGCWC 1 cut(s) 287
Alw26I GTCTC 1 cut(s) 485
AlwI GGATC 1 cut(s) 368
AoxI GGCC 1 cut(s) 354
ApeKI GCWGC 1 cut(s) 310
ApoI RAATTY 1 cut(s) 160
ArsI GACNNNNNNTTYG 2 cut(s) 43, 75
AspS9I GGNCC 1 cut(s) 59
AsuC2I CCSGG 1 cut(s) 307
AsuHPI GGTGA 1 cut(s) 383
AvaII GGWCC 1 cut(s) 59
BbrPI CACGTG 1 cut(s) 368
Bbv12I GWGCWC 1 cut(s) 287
BbvI GCAGC 1 cut(s) 297
BcnI CCSGG 1 cut(s) 307
BcoDI GTCTC 1 cut(s) 485
BfaI CTAG 3 cut(s) 288, 456, 487
BisI GCNGC 1 cut(s) 311
BlpI GCTNAGC 1 cut(s) 314
BlsI GCNGC 1 cut(s) 312
Bme1390I CCNGG 1 cut(s) 307
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 307
BmsI GCATC 2 cut(s) 89, 278
Bpu1102I GCTNAGC 1 cut(s) 314
BpuMI CCSGG 1 cut(s) 307
BsaAI YACGTR 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 378
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 203
Bse1I ACTGG 2 cut(s) 38, 129
BseDI CCNNGG 1 cut(s) 378
BseGI GGATG 1 cut(s) 175
BseLI CCNNNNNNNGG 2 cut(s) 97, 203
BseMII CTCAG 2 cut(s) 328, 410
BseNI ACTGG 2 cut(s) 38, 129
BseXI GCAGC 1 cut(s) 297
BshFI GGCC 1 cut(s) 356
BsiHKAI GWGCWC 1 cut(s) 287
BsiSI CCGG 1 cut(s) 307
BslFI GGGAC 2 cut(s) 180, 289
BslI CCNNNNNNNGG 2 cut(s) 97, 203
BsmAI GTCTC 1 cut(s) 485
BsmFI GGGAC 2 cut(s) 180, 289
BsmI GAATGC 1 cut(s) 318
BsnI GGCC 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 287
Bsp143I GATC 2 cut(s) 244, 373
Bsp1720I GCTNAGC 1 cut(s) 314
Bsp19I CCATGG 1 cut(s) 378
BspACI CCGC 2 cut(s) 148, 484
BspANI GGCC 1 cut(s) 356
BspCNI CTCAG 2 cut(s) 327, 411
BspPI GGATC 1 cut(s) 368
BsrI ACTGG 2 cut(s) 38, 129
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 2 cut(s) 244, 373
BssT1I CCWWGG 1 cut(s) 378
Bst4CI ACNGT 1 cut(s) 341
BstBAI YACGTR 1 cut(s) 368
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 2 cut(s) 314, 419
BstDSI CCRYGG 1 cut(s) 378
BstF5I GGATG 1 cut(s) 175
BstKTI GATC 2 cut(s) 247, 376
BstMAI GTCTC 1 cut(s) 485
BstMBI GATC 2 cut(s) 244, 373
BstMWI GCNNNNNNNGC 2 cut(s) 282, 362
BstSCI CCNGG 1 cut(s) 305
BstV1I GCAGC 1 cut(s) 297
BsuRI GGCC 1 cut(s) 356
BtgI CCRYGG 1 cut(s) 378
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 175
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 2 cut(s) 122, 264
Cac8I GCNNGC 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 31
CviAII CATG 2 cut(s) 323, 379
CviJI RGCY 6 cut(s) 41, 118, 154, 215, 310, 356
CviKI_1 RGCY 6 cut(s) 41, 118, 154, 215, 310, 356
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 2 cut(s) 314, 419
DpnI GATC 2 cut(s) 246, 375
DpnII GATC 2 cut(s) 244, 373
DraIII CACNNNGTG 1 cut(s) 371
Eco130I CCWWGG 1 cut(s) 378
Eco47I GGWCC 1 cut(s) 59
Eco57I CTGAAG 2 cut(s) 156, 351
Eco72I CACGTG 1 cut(s) 368
EcoT14I CCWWGG 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 2 cut(s) 326, 382
FaiI YATR 5 cut(s) 324, 380, 396, 406, 462
FaqI GGGAC 2 cut(s) 180, 289
FatI CATG 2 cut(s) 322, 378
FauI CCCGC 1 cut(s) 141
Fnu4HI GCNGC 1 cut(s) 311
FokI GGATG 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 311
FspBI CTAG 3 cut(s) 288, 456, 487
GluI GCNGC 1 cut(s) 311
HaeIII GGCC 1 cut(s) 356
HapII CCGG 1 cut(s) 307
Hin1II CATG 2 cut(s) 326, 382
HinfI GANTC 2 cut(s) 65, 291
HpaII CCGG 1 cut(s) 307
HphI GGTGA 1 cut(s) 383
Hpy188I TCNGA 3 cut(s) 159, 331, 420
Hpy188III TCNNGA 2 cut(s) 62, 288
Hpy99I CGWCG 1 cut(s) 51
HpyAV CCTTC 2 cut(s) 82, 170
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4IV ACGT 3 cut(s) 302, 367, 439
HpyCH4V TGCA 3 cut(s) 80, 122, 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 282, 362
HpyF3I CTNAG 2 cut(s) 314, 419
HpySE526I ACGT 3 cut(s) 302, 367, 439
Hsp92II CATG 2 cut(s) 326, 382
Kzo9I GATC 2 cut(s) 244, 373
LmnI GCTCC 2 cut(s) 151, 212
LpnPI CCDG 8 cut(s) 19, 69, 75, 110, 166, 320, 338, 402
Lsp1109I GCAGC 1 cut(s) 297
LweI GCATC 2 cut(s) 89, 278
MaeI CTAG 3 cut(s) 288, 456, 487
MaeII ACGT 3 cut(s) 302, 367, 439
MaeIII GTNAC 1 cut(s) 260
MalI GATC 2 cut(s) 246, 375
MboI GATC 2 cut(s) 244, 373
MboII GAAGA 2 cut(s) 149, 254
MhlI GDGCHC 1 cut(s) 287
MluCI AATT 4 cut(s) 11, 17, 101, 160
MlyI GAGTC 1 cut(s) 300
MmeI TCCRAC 1 cut(s) 323
MnlI CCTC 5 cut(s) 53, 101, 166, 226, 414
MslI CAYNNNNRTG 1 cut(s) 252
MspI CCGG 1 cut(s) 307
MspR9I CCNGG 1 cut(s) 307
Mva1269I GAATGC 1 cut(s) 318
MwoI GCNNNNNNNGC 2 cut(s) 282, 362
NciI CCSGG 1 cut(s) 307
NcoI CCATGG 1 cut(s) 378
NdeII GATC 2 cut(s) 244, 373
NlaIII CATG 2 cut(s) 326, 382
NmuCI GTSAC 1 cut(s) 260
PctI GAATGC 1 cut(s) 318
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 312
PleI GAGTC 1 cut(s) 299
PmaCI CACGTG 1 cut(s) 368
PmlI CACGTG 1 cut(s) 368
PpsI GAGTC 1 cut(s) 299
Ppu21I YACGTR 1 cut(s) 368
PspCI CACGTG 1 cut(s) 368
PspPI GGNCC 1 cut(s) 59
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 252
SatI GCNGC 1 cut(s) 311
Sau3AI GATC 2 cut(s) 244, 373
Sau96I GGNCC 1 cut(s) 59
SchI GAGTC 1 cut(s) 300
ScrFI CCNGG 1 cut(s) 307
SduI GDGCHC 1 cut(s) 287
SetI ASST 7 cut(s) 93, 120, 156, 217, 305, 370, 442
SfaNI GCATC 2 cut(s) 89, 278
SinI GGWCC 1 cut(s) 59
SmiMI CAYNNNNRTG 1 cut(s) 252
Sse9I AATT 4 cut(s) 11, 17, 101, 160
SsiI CCGC 2 cut(s) 148, 484
SspMI CTAG 3 cut(s) 288, 456, 487
StyD4I CCNGG 1 cut(s) 305
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 1 cut(s) 341
TaiI ACGT 3 cut(s) 305, 370, 442
TaqI TCGA 2 cut(s) 49, 93
TasI AATT 4 cut(s) 11, 17, 101, 160
TfiI GAWTC 1 cut(s) 65
TscAI CASTG 2 cut(s) 129, 271
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 1 cut(s) 310
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 2 cut(s) 156, 311
TspGWI ACGGA 2 cut(s) 18, 35
TspRI CASTG 2 cut(s) 129, 271
VpaK11BI GGWCC 1 cut(s) 59
XapI RAATTY 1 cut(s) 160
XbaI TCTAGA 1 cut(s) 287
XspI CTAG 3 cut(s) 288, 456, 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.