RchiOBHm_Chr2g0175731

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0015470
Physical Location & Seq
Reverse (-)
87774200 .. 87776428
2229 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54278

Sequence Viewer

Length: 837 bp
ATGGCGATGGAATTAGAATTAGGGTTTCCGTACTGGAAAGCCCTCCGTCGAAAGTTTGGTCCTGAATCTCCCTTCTTTGCATCTGGCAACCTCGAAAGGGAATTGCTCGTCAAACAGCTTGCACTGGATTTGACTGAAGATGAAAAGCGGGAGCTTCGGAATTTCGTGGATGAGGAAGGCAGGGGTGTTTTCTGTCCCATTGTTGGTTGTGGAGCTAAACTGACTTGCTTGGAGGACTTTGAAGATCATTACAATGCTCGTCACACTGCATCTTGCTCTGTGTGCTCTAGAGTCTATCCAACGTCCCGGCTGCTCAGCATTCATGTATCTGAAGCACACAGTTCTTTCTTTCAGGCCAAAGTCGCACGTGGTGATCCCATGTATGAATGCCTTGTAGAAGGCTGTGATTTGAAATTGAAGACCTATAAAAGCCGGCAACAGCATCTGGTGGATAAGCATAAGTTCCCCACTTCATTTGAGTTTTTCAAGAAGGCTCCTCCTTCCAAAAAACAGAGGCAGAAGAAACAAAGAAAGCAAGCTTATGTTAAGAGGGCAGATGCATCTGATATGGAAGTGGAAAATGAAGTCATTGATGACATTGATCATTCAAGAAAACAGAAGAAGAAGAATCAACAGAAGCAAGCTAATCTCAAGAAGCCTGATGTATCTAATATGGATGTGGGAAATGAAGATATCAATAATCTTGTTACTGCTGTCTCCAAGTTAAGCACTTCAGACTCCAGTCCCTCATCCATCAGCTTTGGTCGTCGACCCACTCGTGGCCTGACGTTTGTCCCACGAGCTGTTCAACGTGAGAAAAAACCAGACTCCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2

Protein Analysis

278

Amino Acids

31.75

Weight (kDa)

9.19

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14140
fragaria_vesca FvH4_6g53600
malus_domestica MD09G1010100.v1.1 MD17G1000600.v1.1
prunus_persica Prupe.3G307100_v2.0.a1
pyrus_communis pycom17g00830
rosa_chinensis RchiOBHm_Chr2g0175731
rosa_laevigata RLG00000022353
rosa_multiflora Rmu_sc0000998.1_g000012
rosa_roxburghii Rroxscaffold_2G00077110
rosa_rugosa Rorug02G0587300
rosa_samantha Rh2AG666200 Rh2BG677400 Rh2CG640700 Rh2DG691300
rosa_wichuraiana Rw2G054630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 769
AciI CCGC 1 cut(s) 148
AclWI GGATC 1 cut(s) 368
AcsI RAATTY 1 cut(s) 160
AcuI CTGAAG 3 cut(s) 156, 351, 717
AcvI CACGTG 1 cut(s) 368
AdeI CACNNNGTG 1 cut(s) 371
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 3 cut(s) 97, 203, 779
AgsI TTSAA 6 cut(s) 242, 412, 418, 487, 609, 809
AluBI AGCT 7 cut(s) 118, 154, 215, 539, 644, 759, 803
AluI AGCT 7 cut(s) 118, 154, 215, 539, 644, 759, 803
Alw21I GWGCWC 1 cut(s) 287
Alw26I GTCTC 1 cut(s) 721
AlwI GGATC 1 cut(s) 368
AlwNI CAGNNNCTG 1 cut(s) 445
AoxI GGCC 2 cut(s) 354, 781
ApeKI GCWGC 1 cut(s) 310
ApoI RAATTY 1 cut(s) 160
ArsI GACNNNNNNTTYG 2 cut(s) 43, 75
AspS9I GGNCC 1 cut(s) 59
AsuC2I CCSGG 1 cut(s) 307
AsuHPI GGTGA 1 cut(s) 383
AvaII GGWCC 1 cut(s) 59
BauI CACGAG 2 cut(s) 777, 798
BbrPI CACGTG 1 cut(s) 368
BbsI GAAGAC 1 cut(s) 425
Bbv12I GWGCWC 1 cut(s) 287
BbvI GCAGC 1 cut(s) 297
BccI CCATC 1 cut(s) 761
BclI TGATCA 1 cut(s) 601
BcnI CCSGG 1 cut(s) 307
BcoDI GTCTC 1 cut(s) 721
BfaI CTAG 1 cut(s) 288
BisI GCNGC 1 cut(s) 311
BlpI GCTNAGC 1 cut(s) 314
BlsI GCNGC 1 cut(s) 312
Bme1390I CCNGG 1 cut(s) 307
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 495
BmrFI CCNGG 1 cut(s) 307
BmsI GCATC 5 cut(s) 89, 278, 451, 547, 569
BoxI GACNNNNGTC 2 cut(s) 741, 791
BpiI GAAGAC 1 cut(s) 425
BpmI CTGGAG 1 cut(s) 724
Bpu1102I GCTNAGC 1 cut(s) 314
BpuEI CTTGAG 1 cut(s) 635
BpuMI CCSGG 1 cut(s) 307
BsaAI YACGTR 1 cut(s) 368
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 203, 779
Bse118I RCCGGY 1 cut(s) 432
Bse1I ACTGG 3 cut(s) 38, 129, 741
BseGI GGATG 3 cut(s) 175, 682, 749
BseLI CCNNNNNNNGG 3 cut(s) 97, 203, 779
BseMII CTCAG 1 cut(s) 328
BseNI ACTGG 3 cut(s) 38, 129, 741
BseRI GAGGAG 1 cut(s) 486
BseXI GCAGC 1 cut(s) 297
BshFI GGCC 2 cut(s) 356, 783
BsiHKAI GWGCWC 1 cut(s) 287
BsiSI CCGG 2 cut(s) 307, 433
BslFI GGGAC 4 cut(s) 180, 289, 729, 779
BslI CCNNNNNNNGG 3 cut(s) 97, 203, 779
BsmAI GTCTC 1 cut(s) 721
BsmFI GGGAC 4 cut(s) 180, 289, 729, 779
BsmI GAATGC 2 cut(s) 318, 392
BsnI GGCC 2 cut(s) 356, 783
Bsp1286I GDGCHC 1 cut(s) 287
Bsp143I GATC 3 cut(s) 244, 373, 601
Bsp1720I GCTNAGC 1 cut(s) 314
BspACI CCGC 1 cut(s) 148
BspANI GGCC 2 cut(s) 356, 783
BspCNI CTCAG 1 cut(s) 327
BspLI GGNNCC 1 cut(s) 495
BspPI GGATC 1 cut(s) 368
BsrFI RCCGGY 1 cut(s) 432
BsrI ACTGG 3 cut(s) 38, 129, 741
BssAI RCCGGY 1 cut(s) 432
BssMI GATC 3 cut(s) 244, 373, 601
BssSI CACGAG 2 cut(s) 777, 798
Bst2BI CACGAG 2 cut(s) 777, 798
Bst4CI ACNGT 1 cut(s) 341
BstBAI YACGTR 1 cut(s) 368
BstC8I GCNNGC 4 cut(s) 120, 434, 537, 642
BstDEI CTNAG 1 cut(s) 314
BstF5I GGATG 3 cut(s) 175, 682, 749
BstKTI GATC 3 cut(s) 247, 376, 604
BstMAI GTCTC 1 cut(s) 721
BstMBI GATC 3 cut(s) 244, 373, 601
BstMWI GCNNNNNNNGC 2 cut(s) 282, 362
BstPAI GACNNNNGTC 2 cut(s) 741, 791
BstSCI CCNGG 1 cut(s) 305
BstV1I GCAGC 1 cut(s) 297
BstV2I GAAGAC 1 cut(s) 425
BsuRI GGCC 2 cut(s) 356, 783
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 3 cut(s) 175, 682, 749
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 2 cut(s) 122, 264
Cac8I GCNNGC 4 cut(s) 120, 434, 537, 642
CaiI CAGNNNCTG 1 cut(s) 445
Cfr10I RCCGGY 1 cut(s) 432
Cfr13I GGNCC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 31
CspCI CAANNNNNGTGG 2 cut(s) 457, 492
CviAII CATG 2 cut(s) 323, 379
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 1 cut(s) 314
DpnI GATC 3 cut(s) 246, 375, 603
DpnII GATC 3 cut(s) 244, 373, 601
DraIII CACNNNGTG 1 cut(s) 371
Eco32I GATATC 1 cut(s) 694
Eco47I GGWCC 1 cut(s) 59
Eco57I CTGAAG 3 cut(s) 156, 351, 717
Eco72I CACGTG 1 cut(s) 368
EcoRV GATATC 1 cut(s) 694
EcoT22I ATGCAT 1 cut(s) 562
FaeI CATG 2 cut(s) 326, 382
FaiI YATR 9 cut(s) 324, 380, 384, 426, 459, 543, 569, 674, 835
FaqI GGGAC 4 cut(s) 180, 289, 729, 779
FatI CATG 2 cut(s) 322, 378
FauI CCCGC 1 cut(s) 141
FbaI TGATCA 1 cut(s) 601
FblI GTMKAC 1 cut(s) 769
Fnu4HI GCNGC 1 cut(s) 311
FokI GGATG 3 cut(s) 182, 689, 736
Fsp4HI GCNGC 1 cut(s) 311
FspBI CTAG 1 cut(s) 288
GluI GCNGC 1 cut(s) 311
GsuI CTGGAG 1 cut(s) 724
HaeIII GGCC 2 cut(s) 356, 783
HapII CCGG 2 cut(s) 307, 433
Hin1II CATG 2 cut(s) 326, 382
HincII GTYRAC 1 cut(s) 770
HindII GTYRAC 1 cut(s) 770
HindIII AAGCTT 1 cut(s) 537
HinfI GANTC 5 cut(s) 65, 291, 628, 737, 827
HpaII CCGG 2 cut(s) 307, 433
HphI GGTGA 1 cut(s) 383
Hpy166II GTNNAC 1 cut(s) 770
Hpy188I TCNGA 4 cut(s) 159, 331, 565, 736
Hpy188III TCNNGA 5 cut(s) 62, 288, 487, 609, 652
Hpy8I GTNNAC 1 cut(s) 770
Hpy99I CGWCG 2 cut(s) 51, 771
HpyAV CCTTC 5 cut(s) 82, 170, 392, 484, 510
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4IV ACGT 4 cut(s) 302, 367, 788, 811
HpyCH4V TGCA 4 cut(s) 80, 122, 269, 560
HpyF10VI GCNNNNNNNGC 2 cut(s) 282, 362
HpyF3I CTNAG 1 cut(s) 314
HpySE526I ACGT 4 cut(s) 302, 367, 788, 811
Hsp92II CATG 2 cut(s) 326, 382
KroI GCCGGC 1 cut(s) 432
KroNI GCCGGC 1 cut(s) 434
Ksp22I TGATCA 1 cut(s) 601
Kzo9I GATC 3 cut(s) 244, 373, 601
LmnI GCTCC 3 cut(s) 151, 212, 499
Lsp1109I GCAGC 1 cut(s) 297
LweI GCATC 5 cut(s) 89, 278, 451, 547, 569
MaeI CTAG 1 cut(s) 288
MaeII ACGT 4 cut(s) 302, 367, 788, 811
MaeIII GTNAC 2 cut(s) 260, 706
MalI GATC 3 cut(s) 246, 375, 603
MboI GATC 3 cut(s) 244, 373, 601
MboII GAAGA 8 cut(s) 149, 254, 430, 532, 631, 634, 637, 701
MhlI GDGCHC 1 cut(s) 287
MluCI AATT 5 cut(s) 11, 17, 101, 160, 413
MlyI GAGTC 3 cut(s) 300, 731, 821
MmeI TCCRAC 1 cut(s) 323
MnlI CCTC 8 cut(s) 53, 101, 166, 226, 507, 507, 543, 757
Mph1103I ATGCAT 1 cut(s) 562
MroNI GCCGGC 1 cut(s) 432
MseI TTAA 2 cut(s) 546, 725
MslI CAYNNNNRTG 1 cut(s) 252
MspI CCGG 2 cut(s) 307, 433
MspR9I CCNGG 1 cut(s) 307
Mva1269I GAATGC 2 cut(s) 318, 392
MwoI GCNNNNNNNGC 2 cut(s) 282, 362
NaeI GCCGGC 1 cut(s) 434
NciI CCSGG 1 cut(s) 307
NdeII GATC 3 cut(s) 244, 373, 601
NgoMIV GCCGGC 1 cut(s) 432
NlaIII CATG 2 cut(s) 326, 382
NlaIV GGNNCC 1 cut(s) 495
NmuCI GTSAC 1 cut(s) 260
NsiI ATGCAT 1 cut(s) 562
PcsI WCGNNNNNNNCGW 1 cut(s) 775
PctI GAATGC 2 cut(s) 318, 392
PdiI GCCGGC 1 cut(s) 434
PfeI GAWTC 2 cut(s) 65, 628
PkrI GCNGC 1 cut(s) 312
PleI GAGTC 3 cut(s) 299, 731, 821
PmaCI CACGTG 1 cut(s) 368
PmlI CACGTG 1 cut(s) 368
PpsI GAGTC 3 cut(s) 299, 731, 821
Ppu21I YACGTR 1 cut(s) 368
PshAI GACNNNNGTC 2 cut(s) 741, 791
PspCI CACGTG 1 cut(s) 368
PspN4I GGNNCC 1 cut(s) 495
PspPI GGNCC 1 cut(s) 59
PstNI CAGNNNCTG 1 cut(s) 445
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 252
SalI GTCGAC 1 cut(s) 768
SaqAI TTAA 2 cut(s) 546, 725
SatI GCNGC 1 cut(s) 311
Sau3AI GATC 3 cut(s) 244, 373, 601
Sau96I GGNCC 1 cut(s) 59
SchI GAGTC 3 cut(s) 300, 731, 821
ScrFI CCNGG 1 cut(s) 307
SduI GDGCHC 1 cut(s) 287
SfaNI GCATC 5 cut(s) 89, 278, 451, 547, 569
SinI GGWCC 1 cut(s) 59
SmiMI CAYNNNNRTG 1 cut(s) 252
SmlI CTYRAG 1 cut(s) 650
SmoI CTYRAG 1 cut(s) 650
Sse9I AATT 5 cut(s) 11, 17, 101, 160, 413
SsiI CCGC 1 cut(s) 148
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 1 cut(s) 305
TaaI ACNGT 1 cut(s) 341
TaiI ACGT 4 cut(s) 305, 370, 791, 814
TaqI TCGA 3 cut(s) 49, 93, 769
TasI AATT 5 cut(s) 11, 17, 101, 160, 413
TfiI GAWTC 2 cut(s) 65, 628
Tru1I TTAA 2 cut(s) 546, 725
Tru9I TTAA 2 cut(s) 546, 725
TscAI CASTG 2 cut(s) 129, 271
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 1 cut(s) 310
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 6 cut(s) 156, 311, 399, 462, 597, 702
TspGWI ACGGA 2 cut(s) 18, 35
TspRI CASTG 2 cut(s) 129, 271
VpaK11BI GGWCC 1 cut(s) 59
XapI RAATTY 1 cut(s) 160
XbaI TCTAGA 1 cut(s) 287
XmiI GTMKAC 1 cut(s) 769
XspI CTAG 1 cut(s) 288
Zsp2I ATGCAT 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.