FvH4_6g53600

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015470
Physical Location & Seq
Reverse (-)
39268433 .. 39271329
2897 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53600.t1

Sequence Viewer

Length: 834 bp
ATGGCGATGGAATTAGAATTAGGGTTTCCGTACTGGAAAGCCCTCCGTCGGAAGTTTGGTCCTGAATCTCCGTTCTTCTCCTCCGGCAACATCGAAAGGGAGTTGCTCGTCAAACAGCTTGCGCTGGATTTGACTGAAGATGAGAAGCGAGAGCTTCGGAGTTTCGTGGATGTGGAAGGCAGGGGTGTTTTCTGTCCCATTGTTGGTTGTGGAGCGAGATTGATTTGCTTGGAGGACTTTGAAGATCATTACAATGCTCGTCACTCTGCATCTTGCTCTGTGTGCTCTAGAGTCTATCCGACGTCCCGCCTGCTCGGCATTCATGTTTCTGAAGCACACAGTTCTTTCTTTCAGGCCAAAGTCGCGCGTGGTGATCCCATGTATGAATGCCTCGTAGAAGGCTGTGATTTGAAATTGAAGAGCTATAAAAGCAGGCAACAGCATCTGGTGGATAAGCATAAATTCCCCACTTCATTTGAGTTTTACAAGAAGGCTCCTCCTTCCAAAAAGCGCAGGCAGAAGAATCAAAGAAAGCAAGCTTTTGTTAAGAAGGCAGATGCATCTGATATGGAAGTGGAAAATGAAGTCATTGATGACACTAATCATTCGAGAAAACAGAAGAAGAATCAACGGAAGCAAGCAAATCTTAAGAAACCTGATGCTTCTAATATGGATGTTGGAAATGAAGATATCGATAATCTTGCTTCTGCTGTCTCCAAGTTAAGCACTTCAGACTCCAGCCCCTCATCCATCAGCTTTGGTCGTCGACCCACTCGTGGCCTGACGTTTGTTCCTAGAGCTGTTCAACGGGAGAAAAAACCAGACTCCACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2

Protein Analysis

278

Amino Acids

31.5

Weight (kDa)

9.29

Isoelectric Point (pI)

52.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14140
fragaria_vesca FvH4_6g53600
malus_domestica MD09G1010100.v1.1 MD17G1000600.v1.1
prunus_persica Prupe.3G307100_v2.0.a1
pyrus_communis pycom17g00830
rosa_chinensis RchiOBHm_Chr2g0175731
rosa_laevigata RLG00000022353
rosa_multiflora Rmu_sc0000998.1_g000012
rosa_roxburghii Rroxscaffold_2G00077110
rosa_rugosa Rorug02G0587300
rosa_samantha Rh2AG666200 Rh2BG677400 Rh2CG640700 Rh2DG691300
rosa_wichuraiana Rw2G054630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 305
AccI GTMKAC 1 cut(s) 766
AccII CGCG 2 cut(s) 365, 367
AciI CCGC 1 cut(s) 307
AclWI GGATC 1 cut(s) 368
AcsI RAATTY 1 cut(s) 461
AcuI CTGAAG 3 cut(s) 156, 351, 714
AcyI GRCGYC 1 cut(s) 302
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 3 cut(s) 48, 203, 776
AflII CTTAAG 1 cut(s) 647
AgsI TTSAA 4 cut(s) 242, 412, 418, 806
AluBI AGCT 6 cut(s) 118, 154, 423, 539, 756, 800
AluI AGCT 6 cut(s) 118, 154, 423, 539, 756, 800
Alw21I GWGCWC 1 cut(s) 287
Alw26I GTCTC 1 cut(s) 718
AlwI GGATC 1 cut(s) 368
AlwNI CAGNNNCTG 1 cut(s) 445
AoxI GGCC 2 cut(s) 354, 778
ApoI RAATTY 1 cut(s) 461
AspLEI GCGC 3 cut(s) 124, 367, 513
AspS9I GGNCC 1 cut(s) 59
AsuHPI GGTGA 1 cut(s) 383
AvaII GGWCC 1 cut(s) 59
BauI CACGAG 1 cut(s) 774
Bbv12I GWGCWC 1 cut(s) 287
BccI CCATC 1 cut(s) 758
BcgI CGANNNNNNTGC 2 cut(s) 683, 717
BcoDI GTCTC 1 cut(s) 718
BfaI CTAG 2 cut(s) 288, 795
BfrI CTTAAG 1 cut(s) 647
BglI GCCNNNNNGGC 1 cut(s) 315
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 495
BmsI GCATC 5 cut(s) 278, 451, 547, 569, 649
BpmI CTGGAG 1 cut(s) 721
Bsa29I ATCGAT 1 cut(s) 693
BsaHI GRCGYC 1 cut(s) 302
Bsc4I CCNNNNNNNGG 3 cut(s) 48, 203, 776
Bse1I ACTGG 1 cut(s) 38
BseCI ATCGAT 1 cut(s) 693
BseGI GGATG 3 cut(s) 175, 679, 746
BseLI CCNNNNNNNGG 3 cut(s) 48, 203, 776
BseNI ACTGG 1 cut(s) 38
BseRI GAGGAG 2 cut(s) 70, 486
Bsh1236I CGCG 2 cut(s) 365, 367
BshFI GGCC 2 cut(s) 356, 780
BshVI ATCGAT 1 cut(s) 693
BsiHKAI GWGCWC 1 cut(s) 287
BsiSI CCGG 1 cut(s) 84
BslFI GGGAC 2 cut(s) 180, 289
BslI CCNNNNNNNGG 3 cut(s) 48, 203, 776
BsmAI GTCTC 1 cut(s) 718
BsmFI GGGAC 2 cut(s) 180, 289
BsmI GAATGC 2 cut(s) 318, 392
BsnI GGCC 2 cut(s) 356, 780
Bsp1286I GDGCHC 1 cut(s) 287
Bsp143I GATC 2 cut(s) 244, 373
BspACI CCGC 1 cut(s) 307
BspANI GGCC 2 cut(s) 356, 780
BspDI ATCGAT 1 cut(s) 693
BspFNI CGCG 2 cut(s) 365, 367
BspLI GGNNCC 1 cut(s) 495
BspPI GGATC 1 cut(s) 368
BspQI GCTCTTC 1 cut(s) 413
BspTI CTTAAG 1 cut(s) 647
BsrI ACTGG 1 cut(s) 38
BssMI GATC 2 cut(s) 244, 373
BssNI GRCGYC 1 cut(s) 302
BssSI CACGAG 1 cut(s) 774
Bst2BI CACGAG 1 cut(s) 774
Bst4CI ACNGT 1 cut(s) 341
Bst6I CTCTTC 1 cut(s) 413
BstACI GRCGYC 1 cut(s) 302
BstAFI CTTAAG 1 cut(s) 647
BstC8I GCNNGC 6 cut(s) 120, 311, 434, 515, 537, 639
BstF5I GGATG 3 cut(s) 175, 679, 746
BstFNI CGCG 2 cut(s) 365, 367
BstHHI GCGC 3 cut(s) 124, 367, 513
BstKTI GATC 2 cut(s) 247, 376
BstMAI GTCTC 1 cut(s) 718
BstMBI GATC 2 cut(s) 244, 373
BstMWI GCNNNNNNNGC 4 cut(s) 282, 315, 362, 429
BstUI CGCG 2 cut(s) 365, 367
Bsu15I ATCGAT 1 cut(s) 693
BsuRI GGCC 2 cut(s) 356, 780
BsuTUI ATCGAT 1 cut(s) 693
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 3 cut(s) 175, 679, 746
Cac8I GCNNGC 6 cut(s) 120, 311, 434, 515, 537, 639
CaiI CAGNNNCTG 1 cut(s) 445
CfoI GCGC 3 cut(s) 124, 367, 513
Cfr13I GGNCC 1 cut(s) 59
ClaI ATCGAT 1 cut(s) 693
Csp6I GTAC 1 cut(s) 31
CspCI CAANNNNNGTGG 2 cut(s) 457, 492
CviAII CATG 2 cut(s) 323, 379
CviQI GTAC 1 cut(s) 31
DpnI GATC 2 cut(s) 246, 375
DpnII GATC 2 cut(s) 244, 373
Eam1104I CTCTTC 1 cut(s) 413
EarI CTCTTC 1 cut(s) 413
Eco32I GATATC 1 cut(s) 691
Eco47I GGWCC 1 cut(s) 59
Eco57I CTGAAG 3 cut(s) 156, 351, 714
EcoRV GATATC 1 cut(s) 691
EcoT22I ATGCAT 1 cut(s) 562
FaeI CATG 2 cut(s) 326, 382
FaiI YATR 8 cut(s) 324, 380, 384, 426, 459, 569, 671, 832
FalI AAGNNNNNCTT 2 cut(s) 630, 662
FaqI GGGAC 2 cut(s) 180, 289
FatI CATG 2 cut(s) 322, 378
FauI CCCGC 1 cut(s) 314
FblI GTMKAC 1 cut(s) 766
FokI GGATG 3 cut(s) 182, 686, 733
FspBI CTAG 2 cut(s) 288, 795
GlaI GCGC 3 cut(s) 123, 366, 512
GsuI CTGGAG 1 cut(s) 721
HaeIII GGCC 2 cut(s) 356, 780
HapII CCGG 1 cut(s) 84
HhaI GCGC 3 cut(s) 124, 367, 513
Hin1I GRCGYC 1 cut(s) 302
Hin1II CATG 2 cut(s) 326, 382
Hin6I GCGC 3 cut(s) 122, 365, 511
HinP1I GCGC 3 cut(s) 122, 365, 511
HincII GTYRAC 1 cut(s) 767
HindII GTYRAC 1 cut(s) 767
HindIII AAGCTT 1 cut(s) 537
HinfI GANTC 6 cut(s) 65, 291, 523, 625, 734, 824
HpaII CCGG 1 cut(s) 84
HphI GGTGA 1 cut(s) 383
Hpy166II GTNNAC 1 cut(s) 767
Hpy188I TCNGA 6 cut(s) 51, 159, 300, 331, 565, 733
Hpy188III TCNNGA 3 cut(s) 62, 288, 609
Hpy8I GTNNAC 1 cut(s) 767
Hpy99I CGWCG 3 cut(s) 51, 304, 768
HpyAV CCTTC 5 cut(s) 170, 392, 484, 510, 544
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4IV ACGT 2 cut(s) 302, 785
HpyCH4V TGCA 2 cut(s) 269, 560
HpyF10VI GCNNNNNNNGC 4 cut(s) 282, 315, 362, 429
HpySE526I ACGT 2 cut(s) 302, 785
Hsp92I GRCGYC 1 cut(s) 302
Hsp92II CATG 2 cut(s) 326, 382
HspAI GCGC 3 cut(s) 122, 365, 511
Kzo9I GATC 2 cut(s) 244, 373
LguI GCTCTTC 1 cut(s) 413
LmnI GCTCC 2 cut(s) 212, 499
LweI GCATC 5 cut(s) 278, 451, 547, 569, 649
MaeI CTAG 2 cut(s) 288, 795
MaeII ACGT 2 cut(s) 302, 785
MaeIII GTNAC 1 cut(s) 260
MalI GATC 2 cut(s) 246, 375
MboI GATC 2 cut(s) 244, 373
MboII GAAGA 8 cut(s) 67, 149, 254, 430, 532, 631, 634, 698
MhlI GDGCHC 1 cut(s) 287
MluCI AATT 4 cut(s) 11, 17, 413, 461
MlyI GAGTC 3 cut(s) 300, 728, 818
MmeI TCCRAC 3 cut(s) 29, 323, 658
MnlI CCTC 6 cut(s) 53, 91, 226, 401, 507, 754
Mph1103I ATGCAT 1 cut(s) 562
MseI TTAA 3 cut(s) 546, 648, 722
MslI CAYNNNNRTG 1 cut(s) 252
MspCI CTTAAG 1 cut(s) 647
MspI CCGG 1 cut(s) 84
Mva1269I GAATGC 2 cut(s) 318, 392
MvnI CGCG 2 cut(s) 365, 367
MwoI GCNNNNNNNGC 4 cut(s) 282, 315, 362, 429
NdeII GATC 2 cut(s) 244, 373
NlaIII CATG 2 cut(s) 326, 382
NlaIV GGNNCC 1 cut(s) 495
NmeAIII GCCGAG 1 cut(s) 294
NmuCI GTSAC 1 cut(s) 260
NsiI ATGCAT 1 cut(s) 562
PciSI GCTCTTC 1 cut(s) 413
PcsI WCGNNNNNNNCGW 1 cut(s) 772
PctI GAATGC 2 cut(s) 318, 392
PfeI GAWTC 3 cut(s) 65, 523, 625
PleI GAGTC 3 cut(s) 299, 728, 818
PpsI GAGTC 3 cut(s) 299, 728, 818
PspN4I GGNNCC 1 cut(s) 495
PspPI GGNCC 1 cut(s) 59
PstNI CAGNNNCTG 1 cut(s) 445
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 252
SalI GTCGAC 1 cut(s) 765
SapI GCTCTTC 1 cut(s) 413
SaqAI TTAA 3 cut(s) 546, 648, 722
Sau3AI GATC 2 cut(s) 244, 373
Sau96I GGNCC 1 cut(s) 59
SchI GAGTC 3 cut(s) 300, 728, 818
SduI GDGCHC 1 cut(s) 287
SetI ASST 9 cut(s) 120, 156, 305, 425, 541, 658, 758, 788, 802
SfaNI GCATC 5 cut(s) 278, 451, 547, 569, 649
SinI GGWCC 1 cut(s) 59
SmiMI CAYNNNNRTG 1 cut(s) 252
SmlI CTYRAG 1 cut(s) 647
SmoI CTYRAG 1 cut(s) 647
Sse9I AATT 4 cut(s) 11, 17, 413, 461
SsiI CCGC 1 cut(s) 307
SspMI CTAG 2 cut(s) 288, 795
TaaI ACNGT 1 cut(s) 341
TaiI ACGT 2 cut(s) 305, 788
TaqI TCGA 4 cut(s) 93, 608, 693, 766
TasI AATT 4 cut(s) 11, 17, 413, 461
TfiI GAWTC 3 cut(s) 65, 523, 625
Tru1I TTAA 3 cut(s) 546, 648, 722
Tru9I TTAA 3 cut(s) 546, 648, 722
TseFI GTSAC 1 cut(s) 260
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 5 cut(s) 311, 399, 462, 597, 699
TspGWI ACGGA 4 cut(s) 18, 35, 60, 646
Vha464I CTTAAG 1 cut(s) 647
VpaK11BI GGWCC 1 cut(s) 59
XapI RAATTY 1 cut(s) 461
XbaI TCTAGA 1 cut(s) 287
XmiI GTMKAC 1 cut(s) 766
XspI CTAG 2 cut(s) 288, 795
ZraI GACGTC 1 cut(s) 303
Zsp2I ATGCAT 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.