MD09G1010100.v1.1

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0015470
Physical Location & Seq
Forward (+)
685540 .. 687608
2069 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1010100.v1.1.491

Sequence Viewer

Length: 744 bp
ATGGCGTCGATGGATGTAGAAGAAGCACAATTAGGGTTTCCGCACTGGAAACCCCTCCGTCGGAAGTTCGCTCCCGAATCTCCTTTCTTCGCATCTGGAAACATCGAGAGGGAACTGCTCGCCAAACAGATTGCGTTGGATTTAACCGAAGACGAAAAGCATCAGCTTCGAGAAATGGTAGATGGGGAAGGCAGGGGGTGTTTCTGTCCGATTGTTGGTTGCGGTGCTCACTTGAGTTCCTTGGAGGACTTTGAAGATCACTACAATGCACGGCACACTGCGTCGTGTTCTGTGTGCTATAGAGCCTACCCAACGTCGCGGTTGCTCAGCATACATGTATCTGAAGCACACGATTCTTTCTTTCAGGCGAAAGTGGCACGCGGCTATCTCATGTATGAATGCCTTGTGGAAGGCTGTGGTTTGAAGTTCAAGAACTACAAAAGTCGGCAGCAACATCTGGTGGACAAGCATAAATTCCCCACTTCATTTGAGTTTTTCAAGAAGGCTCTTCCTTCTAAAAAACAGAGGCAGAAGAACCAACGCAGACAAGCTACTTCGAAGAAGGCAGAGTCATCTAGTATGCAAGTAGATAACGAAACCATGGATGGCCTTGTTTCTGGCGTCTCCAAATTAAGCACATCAGACTCGACCCCTTCAGCCATCAGCTTTGGTCGTAGACCCACTCGTGGCATGACATTCGTCCCAAGAGCTGTTCAGCGTGAGAAAAAACCGGACTGCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2

Protein Analysis

248

Amino Acids

27.98

Weight (kDa)

9.06

Isoelectric Point (pI)

49.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14140
fragaria_vesca FvH4_6g53600
malus_domestica MD09G1010100.v1.1 MD17G1000600.v1.1
prunus_persica Prupe.3G307100_v2.0.a1
pyrus_communis pycom17g00830
rosa_chinensis RchiOBHm_Chr2g0175731
rosa_laevigata RLG00000022353
rosa_multiflora Rmu_sc0000998.1_g000012
rosa_roxburghii Rroxscaffold_2G00077110
rosa_rugosa Rorug02G0587300
rosa_samantha Rh2AG666200 Rh2BG677400 Rh2CG640700 Rh2DG691300
rosa_wichuraiana Rw2G054630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 676
AccII CGCG 2 cut(s) 319, 381
AciI CCGC 4 cut(s) 41, 222, 319, 381
AcsI RAATTY 1 cut(s) 473
AcuI CTGAAG 2 cut(s) 363, 639
AcyI GRCGYC 2 cut(s) 5, 621
AfiI CCNNNNNNNGG 3 cut(s) 60, 215, 686
AflIII ACRYGT 1 cut(s) 334
AgsI TTSAA 4 cut(s) 254, 424, 430, 499
AluBI AGCT 4 cut(s) 166, 551, 666, 710
AluI AGCT 4 cut(s) 166, 551, 666, 710
Alw21I GWGCWC 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 628
AoxI GGCC 1 cut(s) 607
ApeKI GCWGC 1 cut(s) 448
ApoI RAATTY 1 cut(s) 473
AsuII TTCGAA 1 cut(s) 557
BauI CACGAG 1 cut(s) 684
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 229
BbvI GCAGC 1 cut(s) 460
BccI CCATC 4 cut(s) 4, 176, 599, 668
BceAI ACGGC 1 cut(s) 287
BcgI CGANNNNNNTGC 4 cut(s) 149, 183, 679, 713
BcoDI GTCTC 1 cut(s) 628
BfaI CTAG 1 cut(s) 576
BfmI CTRYAG 1 cut(s) 298
BisI GCNGC 2 cut(s) 382, 449
BlpI GCTNAGC 1 cut(s) 326
BlsI GCNGC 2 cut(s) 383, 450
BmsI GCATC 2 cut(s) 101, 169
BoxI GACNNNNGTC 1 cut(s) 698
BpiI GAAGAC 1 cut(s) 156
Bpu1102I GCTNAGC 1 cut(s) 326
Bpu14I TTCGAA 1 cut(s) 557
BpuEI CTTGAG 1 cut(s) 253
BsaHI GRCGYC 2 cut(s) 5, 621
BsaJI CCNNGG 2 cut(s) 240, 600
BsaWI WCCGGW 1 cut(s) 730
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 215, 686
Bse1I ACTGG 1 cut(s) 50
BseDI CCNNGG 2 cut(s) 240, 600
BseGI GGATG 2 cut(s) 19, 610
BseLI CCNNNNNNNGG 3 cut(s) 60, 215, 686
BseMII CTCAG 1 cut(s) 340
BseNI ACTGG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 460
BsgI GTGCAG 1 cut(s) 721
Bsh1236I CGCG 2 cut(s) 319, 381
BshFI GGCC 1 cut(s) 609
BsiHKAI GWGCWC 1 cut(s) 229
BsiSI CCGG 1 cut(s) 731
BslFI GGGAC 1 cut(s) 686
BslI CCNNNNNNNGG 3 cut(s) 60, 215, 686
BsmAI GTCTC 1 cut(s) 628
BsmBI CGTCTC 1 cut(s) 628
BsmFI GGGAC 1 cut(s) 686
BsmI GAATGC 1 cut(s) 404
BsnI GGCC 1 cut(s) 609
Bsp119I TTCGAA 1 cut(s) 557
Bsp1286I GDGCHC 1 cut(s) 229
Bsp143I GATC 1 cut(s) 256
Bsp1720I GCTNAGC 1 cut(s) 326
Bsp19I CCATGG 1 cut(s) 600
BspACI CCGC 4 cut(s) 41, 222, 319, 381
BspANI GGCC 1 cut(s) 609
BspCNI CTCAG 1 cut(s) 339
BspFNI CGCG 2 cut(s) 319, 381
BspQI GCTCTTC 1 cut(s) 513
BspT104I TTCGAA 1 cut(s) 557
BsrI ACTGG 1 cut(s) 50
BssECI CCNNGG 2 cut(s) 240, 600
BssMI GATC 1 cut(s) 256
BssNI GRCGYC 2 cut(s) 5, 621
BssSI CACGAG 1 cut(s) 684
BssT1I CCWWGG 2 cut(s) 240, 600
Bst2BI CACGAG 1 cut(s) 684
Bst6I CTCTTC 1 cut(s) 513
BstACI GRCGYC 2 cut(s) 5, 621
BstBI TTCGAA 1 cut(s) 557
BstC8I GCNNGC 2 cut(s) 120, 379
BstDEI CTNAG 1 cut(s) 326
BstDSI CCRYGG 1 cut(s) 600
BstF5I GGATG 2 cut(s) 19, 610
BstFNI CGCG 2 cut(s) 319, 381
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 1 cut(s) 628
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstNSI RCATGY 1 cut(s) 338
BstPAI GACNNNNGTC 1 cut(s) 698
BstSFI CTRYAG 1 cut(s) 298
BstUI CGCG 2 cut(s) 319, 381
BstV1I GCAGC 1 cut(s) 460
BstV2I GAAGAC 1 cut(s) 156
BsuRI GGCC 1 cut(s) 609
BtgI CCRYGG 1 cut(s) 600
BtsCI GGATG 2 cut(s) 19, 610
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 2 cut(s) 43, 276
Cac8I GCNNGC 2 cut(s) 120, 379
CseI GACGC 2 cut(s) 270, 610
CspCI CAANNNNNGTGG 2 cut(s) 469, 504
CviAII CATG 4 cut(s) 335, 391, 601, 691
DdeI CTNAG 1 cut(s) 326
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 513
Eco130I CCWWGG 2 cut(s) 240, 600
Eco57I CTGAAG 2 cut(s) 363, 639
EcoT14I CCWWGG 2 cut(s) 240, 600
ErhI CCWWGG 2 cut(s) 240, 600
Esp3I CGTCTC 1 cut(s) 628
FaeI CATG 4 cut(s) 338, 394, 604, 694
FaqI GGGAC 1 cut(s) 686
FatI CATG 4 cut(s) 334, 390, 600, 690
FblI GTMKAC 1 cut(s) 676
Fnu4HI GCNGC 2 cut(s) 382, 449
FokI GGATG 2 cut(s) 26, 617
Fsp4HI GCNGC 2 cut(s) 382, 449
FspBI CTAG 1 cut(s) 576
GluI GCNGC 2 cut(s) 382, 449
HaeIII GGCC 1 cut(s) 609
HapII CCGG 1 cut(s) 731
HgaI GACGC 2 cut(s) 270, 610
Hin1I GRCGYC 2 cut(s) 5, 621
Hin1II CATG 4 cut(s) 338, 394, 604, 694
HinfI GANTC 4 cut(s) 77, 353, 569, 644
HpaII CCGG 1 cut(s) 731
Hpy166II GTNNAC 2 cut(s) 463, 677
Hpy188I TCNGA 4 cut(s) 63, 210, 343, 643
Hpy188III TCNNGA 6 cut(s) 74, 96, 106, 170, 430, 499
Hpy8I GTNNAC 2 cut(s) 463, 677
Hpy99I CGWCG 4 cut(s) 10, 63, 286, 319
HpyAV CCTTC 6 cut(s) 182, 404, 496, 522, 556, 663
HpyCH4IV ACGT 1 cut(s) 314
HpyCH4V TGCA 3 cut(s) 269, 583, 738
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpyF3I CTNAG 1 cut(s) 326
HpySE526I ACGT 1 cut(s) 314
Hsp92I GRCGYC 2 cut(s) 5, 621
Hsp92II CATG 4 cut(s) 338, 394, 604, 694
Kzo9I GATC 1 cut(s) 256
LguI GCTCTTC 1 cut(s) 513
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 6 cut(s) 31, 81, 178, 350, 443, 603
Lsp1109I GCAGC 1 cut(s) 460
LweI GCATC 2 cut(s) 101, 169
MaeI CTAG 1 cut(s) 576
MaeII ACGT 1 cut(s) 314
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 7 cut(s) 32, 79, 161, 266, 500, 544, 571
MhlI GDGCHC 1 cut(s) 229
MluCI AATT 3 cut(s) 29, 473, 629
MlyI GAGTC 2 cut(s) 578, 638
MmeI TCCRAC 2 cut(s) 41, 117
MnlI CCTC 4 cut(s) 65, 102, 238, 519
MseI TTAA 2 cut(s) 143, 632
MslI CAYNNNNRTG 1 cut(s) 264
MspI CCGG 1 cut(s) 731
Mva1269I GAATGC 1 cut(s) 404
MvnI CGCG 2 cut(s) 319, 381
MwoI GCNNNNNNNGC 1 cut(s) 374
NcoI CCATGG 1 cut(s) 600
NdeII GATC 1 cut(s) 256
NlaIII CATG 4 cut(s) 338, 394, 604, 694
NspI RCATGY 1 cut(s) 338
NspV TTCGAA 1 cut(s) 557
PciI ACATGT 1 cut(s) 334
PciSI GCTCTTC 1 cut(s) 513
PctI GAATGC 1 cut(s) 404
PfeI GAWTC 2 cut(s) 77, 353
PkrI GCNGC 2 cut(s) 383, 450
PleI GAGTC 2 cut(s) 577, 638
PpsI GAGTC 2 cut(s) 577, 638
PscI ACATGT 1 cut(s) 334
PshAI GACNNNNGTC 1 cut(s) 698
RseI CAYNNNNRTG 1 cut(s) 264
SapI GCTCTTC 1 cut(s) 513
SaqAI TTAA 2 cut(s) 143, 632
SatI GCNGC 2 cut(s) 382, 449
Sau3AI GATC 1 cut(s) 256
SchI GAGTC 2 cut(s) 578, 638
SduI GDGCHC 1 cut(s) 229
SetI ASST 5 cut(s) 168, 317, 553, 668, 712
SfaNI GCATC 2 cut(s) 101, 169
SfcI CTRYAG 1 cut(s) 298
SfuI TTCGAA 1 cut(s) 557
SmiMI CAYNNNNRTG 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
Sse9I AATT 3 cut(s) 29, 473, 629
SsiI CCGC 4 cut(s) 41, 222, 319, 381
SspMI CTAG 1 cut(s) 576
StyI CCWWGG 2 cut(s) 240, 600
TaiI ACGT 1 cut(s) 317
TaqI TCGA 5 cut(s) 8, 105, 169, 557, 647
TasI AATT 3 cut(s) 29, 473, 629
TauI GCSGC 1 cut(s) 384
TfiI GAWTC 2 cut(s) 77, 353
Tru1I TTAA 2 cut(s) 143, 632
Tru9I TTAA 2 cut(s) 143, 632
TscAI CASTG 2 cut(s) 50, 283
TseI GCWGC 1 cut(s) 448
TspDTI ATGAA 2 cut(s) 411, 474
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 2 cut(s) 50, 283
XapI RAATTY 1 cut(s) 473
XceI RCATGY 1 cut(s) 338
XmiI GTMKAC 1 cut(s) 676
XspI CTAG 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.