Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013244

Physical Location & Seq

Genomic Coordinates Reverse (-)

4617218 .. 4618981

Gene Structure 1764 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G14320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCGCAGATGGTTGCGATGCCCGTAGCGCACTCGCTCTCACTCATTTGCAATTGGGCAAAATCCAATCCTCTCTCTCGCAACACTCTTGCCCTCCCAGCTTCAAACACTCCCAATAAGCAGAGTCTAAGCATCAGATGTGCTCGTGTTGGTGGAGTGGAGATTCCGGCTAATAAGAGAATTGAGTACTCTCTTCAGTACATTCATGGGATTGGTCGAACTAGGGCTCGTCAGATTCTTGTTGATCTTCAGATGGAGAACAAGATTACTAAAGACATGGCTGAGGAAGAACTCATCATTCTTCGTGATGAAGTCTCCAAGTACATGATTGAGGGTGATCTGAGGAGGTTCAATGCTCTTGCAATCAAGAGGTTGAAGGAGATCCAGTGTTACCGTGGGGTAAGGCACATCCAAGGGCTGCCATGTCGGGGACAGAGAACCAAGAACAACTGCAGGACTCTTAAAGGCAAGAAAATTGCTATTGCAGGGAAGAAGAAAGTTTCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022613 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

169

Amino Acids

19.1

Weight (kDa)

10.27

Isoelectric Point (pI)

51.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	49 - 153	1.3e-31	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14320 AT5G14320
fragaria_vesca	FvH4_2g26180
malus_domestica	MD05G1042800.v1.1
prunus_persica	Prupe.1G504800_v2.0.a1 Prupe.1G504800_v2.0.a1 Prupe.1G504800_v2.0.a1
pyrus_communis	pycom05g03540
rosa_chinensis	RchiOBHm_Chr6g0294611
rosa_laevigata	RLG00000011854
rosa_multiflora	Rmu_sc0006264.1_g000010
rosa_roxburghii	Rroxscaffold_7G00173160
rosa_rugosa	Rorug06G0246300
rosa_samantha	Rh6AG358700 Rh6BG365900 Rh6CG372500 Rh6DG359300
rosa_wichuraiana	Rw6G031300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	376
AcuI	CTGAAG	2 cut(s)	179, 233
AfaI	GTAC	3 cut(s)	188, 200, 323
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgsI	TTSAA	3 cut(s)	105, 352, 376
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
Alw21I	GWGCWC	1 cut(s)	145
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	1 cut(s)	376
ApeKI	GCWGC	1 cut(s)	418
AspLEI	GCGC	2 cut(s)	7, 31
AsuHPI	GGTGA	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	229
BauI	CACGAG	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	145
BbvCI	CCTCAGC	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	405
BccI	CCATC	2 cut(s)	4, 247
BcoDI	GTCTC	1 cut(s)	319
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	451
BisI	GCNGC	1 cut(s)	419
BlsI	GCNGC	1 cut(s)	420
BmcAI	AGTACT	1 cut(s)	188
BmsI	GCATC	2 cut(s)	9, 141
Bpu10I	CCTNAGC	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	394, 412
BsaXI	ACNNNNNCTCC	2 cut(s)	371, 401
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse1I	ACTGG	1 cut(s)	385
BseDI	CCNNGG	2 cut(s)	394, 412
BseGI	GGATG	1 cut(s)	408
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMII	CTCAG	2 cut(s)	273, 332
BseNI	ACTGG	1 cut(s)	385
BseRI	GAGGAG	1 cut(s)	358
BseXI	GCAGC	1 cut(s)	405
BseYI	CCCAGC	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	145
BsiSI	CCGG	1 cut(s)	167
BslFI	GGGAC	1 cut(s)	444
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	444
Bsp1286I	GDGCHC	2 cut(s)	145, 229
Bsp143I	GATC	3 cut(s)	244, 337, 381
BspCNI	CTCAG	2 cut(s)	274, 333
BspMAI	CTGCAG	1 cut(s)	455
BspPI	GGATC	1 cut(s)	376
BsrI	ACTGG	1 cut(s)	385
BssECI	CCNNGG	2 cut(s)	394, 412
BssMI	GATC	3 cut(s)	244, 337, 381
BssSI	CACGAG	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	412
Bst2BI	CACGAG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	395
Bst6I	CTCTTC	1 cut(s)	198
BstDEI	CTNAG	3 cut(s)	128, 282, 341
BstDSI	CCRYGG	1 cut(s)	394
BstF5I	GGATG	1 cut(s)	408
BstHHI	GCGC	2 cut(s)	7, 31
BstKTI	GATC	3 cut(s)	247, 340, 384
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	3 cut(s)	244, 337, 381
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 98
BstSFI	CTRYAG	1 cut(s)	451
BstV1I	GCAGC	1 cut(s)	405
BstX2I	RGATCY	1 cut(s)	381
BstYI	RGATCY	1 cut(s)	381
BtgI	CCRYGG	1 cut(s)	394
BtgZI	GCGATG	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	408
BtsIMutI	CAGTG	1 cut(s)	392
CfoI	GCGC	2 cut(s)	7, 31
Csp6I	GTAC	3 cut(s)	187, 199, 322
CviAII	CATG	4 cut(s)	206, 277, 325, 423
CviJI	RGCY	5 cut(s)	101, 170, 227, 281, 418
CviKI_1	RGCY	5 cut(s)	101, 170, 227, 281, 418
CviQI	GTAC	3 cut(s)	187, 199, 322
DdeI	CTNAG	3 cut(s)	128, 282, 341
DpnI	GATC	3 cut(s)	246, 339, 383
DpnII	GATC	3 cut(s)	244, 337, 381
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	412
Eco24I	GRGCYC	1 cut(s)	229
Eco57I	CTGAAG	2 cut(s)	179, 233
EcoT14I	CCWWGG	1 cut(s)	412
EcoT38I	GRGCYC	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	412
FaeI	CATG	4 cut(s)	209, 280, 328, 426
FaiI	YATR	4 cut(s)	207, 278, 326, 424
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	4 cut(s)	205, 276, 324, 422
Fnu4HI	GCNGC	1 cut(s)	419
FokI	GGATG	1 cut(s)	395
FriOI	GRGCYC	1 cut(s)	229
Fsp4HI	GCNGC	1 cut(s)	419
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	2 cut(s)	6, 30
GluI	GCNGC	1 cut(s)	419
GsaI	CCCAGC	1 cut(s)	101
HapII	CCGG	1 cut(s)	167
HhaI	GCGC	2 cut(s)	7, 31
Hin1II	CATG	4 cut(s)	209, 280, 328, 426
Hin6I	GCGC	2 cut(s)	5, 29
HinP1I	GCGC	2 cut(s)	5, 29
HinfI	GANTC	4 cut(s)	124, 163, 235, 457
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	1 cut(s)	347
Hpy188I	TCNGA	4 cut(s)	137, 234, 252, 342
Hpy188III	TCNNGA	2 cut(s)	305, 367
HpyAV	CCTTC	1 cut(s)	370
HpyCH4III	ACNGT	1 cut(s)	395
HpyCH4V	TGCA	4 cut(s)	51, 362, 453, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 98
HpyF3I	CTNAG	3 cut(s)	128, 282, 341
Hsp92II	CATG	4 cut(s)	209, 280, 328, 426
HspAI	GCGC	2 cut(s)	5, 29
Kzo9I	GATC	3 cut(s)	244, 337, 381
LpnPI	CCDG	5 cut(s)	111, 180, 398, 439, 471
Lsp1109I	GCAGC	1 cut(s)	405
LweI	GCATC	2 cut(s)	9, 141
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	3 cut(s)	246, 339, 383
MboI	GATC	3 cut(s)	244, 337, 381
MboII	GAAGA	6 cut(s)	185, 239, 293, 299, 502, 505
MfeI	CAATTG	1 cut(s)	52
MflI	RGATCY	1 cut(s)	381
MhlI	GDGCHC	2 cut(s)	145, 229
MluCI	AATT	3 cut(s)	52, 180, 474
MlyI	GAGTC	2 cut(s)	133, 451
MnlI	CCTC	7 cut(s)	81, 104, 277, 325, 336, 339, 363
MseI	TTAA	1 cut(s)	462
MspI	CCGG	1 cut(s)	167
MunI	CAATTG	1 cut(s)	52
MwoI	GCNNNNNNNGC	2 cut(s)	28, 98
NdeII	GATC	3 cut(s)	244, 337, 381
NlaIII	CATG	4 cut(s)	209, 280, 328, 426
PfeI	GAWTC	2 cut(s)	163, 235
PkrI	GCNGC	1 cut(s)	420
PleI	GAGTC	2 cut(s)	132, 451
PpsI	GAGTC	2 cut(s)	132, 451
PspFI	CCCAGC	1 cut(s)	97
PstI	CTGCAG	1 cut(s)	455
PsuI	RGATCY	1 cut(s)	381
RsaI	GTAC	3 cut(s)	188, 200, 323
RsaNI	GTAC	3 cut(s)	187, 199, 322
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	1 cut(s)	419
Sau3AI	GATC	3 cut(s)	244, 337, 381
ScaI	AGTACT	1 cut(s)	188
SchI	GAGTC	2 cut(s)	133, 451
SduI	GDGCHC	2 cut(s)	145, 229
SetI	ASST	3 cut(s)	103, 350, 374
SfaNI	GCATC	2 cut(s)	9, 141
SfcI	CTRYAG	1 cut(s)	451
Sse9I	AATT	3 cut(s)	52, 180, 474
SspMI	CTAG	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	412
TaaI	ACNGT	1 cut(s)	395
TaqI	TCGA	1 cut(s)	217
TasI	AATT	3 cut(s)	52, 180, 474
TatI	WGTACW	3 cut(s)	186, 198, 321
TfiI	GAWTC	2 cut(s)	163, 235
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	1 cut(s)	392
TseI	GCWGC	1 cut(s)	418
TspDTI	ATGAA	2 cut(s)	194, 324
TspRI	CASTG	1 cut(s)	392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	392
XspI	CTAG	1 cut(s)	222
ZrmI	AGTACT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.