Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0013244

Physical Location & Seq

Genomic Coordinates Reverse (-)

13283017 .. 13284393

Gene Structure 1377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00173160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCGCAAACCCTGGCAATGCCTGTTGCACCGTCTCTCTCCGTAGTCTGCAACGGCCGAAACCCTAATCCGTTCTCCACCACTCTCTCACTCCCAGTCAGAAACCCCAAGGTAGGTGGTTTAAGCATCAAATGTGTGCGTGTTGGGGGAGTTGAAATCCCAAACAACAAGAGGGTCGAGTTTTCTCTTCAGTACGTTCATGGAATTGGGCGTACCAGAGCACGTACAATCCTGAACGACCTGAAAATGGAGAACAAGGTCACCAAAGACTTGTCTGAAGAAGAGCTTACTATAATTCGTGAGGAGGTCTCCAAGTACATGATTGAAGGAGACTTGAGGCGGTTCAATGCTTTGAACATTAGGAGATTGAAGGAGATTCAGTGCTACAGGGGGATAAGGCATATTCAGGGTCTGCCTTGTAGAGGGCAGAGGACTAAGAACAACACCAGGACTTTGAAGGGTAAGAGGGTCACTGTTGCTGGAAAGAAGAAAGCTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022613 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

166

Amino Acids

18.72

Weight (kDa)

10.7

Isoelectric Point (pI)

51.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	47 - 151	1.5e-30	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14320 AT5G14320
fragaria_vesca	FvH4_2g26180
malus_domestica	MD05G1042800.v1.1
prunus_persica	Prupe.1G504800_v2.0.a1 Prupe.1G504800_v2.0.a1 Prupe.1G504800_v2.0.a1
pyrus_communis	pycom05g03540
rosa_chinensis	RchiOBHm_Chr6g0294611
rosa_laevigata	RLG00000011854
rosa_multiflora	Rmu_sc0006264.1_g000010
rosa_roxburghii	Rroxscaffold_7G00173160
rosa_rugosa	Rorug06G0246300
rosa_samantha	Rh6AG358700 Rh6BG365900 Rh6CG372500 Rh6DG359300
rosa_wichuraiana	Rw6G031300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	340
AcoI	YGGCCR	1 cut(s)	55
AcuI	CTGAAG	2 cut(s)	173, 297
AfaI	GTAC	4 cut(s)	194, 214, 226, 317
AfiI	CCNNNNNNNGG	3 cut(s)	113, 247, 422
AgsI	TTSAA	6 cut(s)	155, 326, 346, 355, 370, 457
AjnI	CCWGG	2 cut(s)	12, 446
AluBI	AGCT	2 cut(s)	286, 494
AluI	AGCT	2 cut(s)	286, 494
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	3 cut(s)	39, 313, 324
AlwNI	CAGNNNCTG	1 cut(s)	412
AoxI	GGCC	1 cut(s)	55
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	223
BceAI	ACGGC	1 cut(s)	70
BciT130I	CCWGG	2 cut(s)	14, 448
BcoDI	GTCTC	3 cut(s)	39, 313, 324
BfmI	CTRYAG	1 cut(s)	385
Bme1390I	CCNGG	2 cut(s)	14, 448
BmrFI	CCNGG	2 cut(s)	14, 448
BmrI	ACTGGG	1 cut(s)	89
BmsI	GCATC	1 cut(s)	135
BmuI	ACTGGG	1 cut(s)	89
BplI	GAGNNNNNCTC	2 cut(s)	293, 325
BpuEI	CTTGAG	1 cut(s)	355
BsaAI	YACGTR	1 cut(s)	224
BsaI	GGTCTC	1 cut(s)	313
BsaJI	CCNNGG	2 cut(s)	12, 108
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 247, 422
Bse1I	ACTGG	1 cut(s)	95
Bse3DI	GCAATG	1 cut(s)	24
BseBI	CCWGG	2 cut(s)	14, 448
BseDI	CCNNGG	2 cut(s)	12, 108
BseLI	CCNNNNNNNGG	3 cut(s)	113, 247, 422
BseMI	GCAATG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	317
BseX3I	CGGCCG	1 cut(s)	55
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	57
BsiEI	CGRYCG	1 cut(s)	58
BsiHKAI	GWGCWC	1 cut(s)	223
BslI	CCNNNNNNNGG	3 cut(s)	113, 247, 422
BsmAI	GTCTC	3 cut(s)	39, 313, 324
BsmBI	CGTCTC	1 cut(s)	39
BsnI	GGCC	1 cut(s)	57
Bso31I	GGTCTC	1 cut(s)	313
Bsp1286I	GDGCHC	1 cut(s)	223
BspACI	CCGC	1 cut(s)	340
BspANI	GGCC	1 cut(s)	57
BspQI	GCTCTTC	1 cut(s)	276
BspTNI	GGTCTC	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	12, 108
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	2 cut(s)	14, 448
Bst4CI	ACNGT	2 cut(s)	33, 475
Bst6I	CTCTTC	2 cut(s)	192, 276
BstBAI	YACGTR	1 cut(s)	224
BstDEI	CTNAG	1 cut(s)	435
BstEII	GGTNACC	1 cut(s)	259
BstENI	CCTNNNNNAGG	1 cut(s)	420
BstHHI	GCGC	1 cut(s)	7
BstMAI	GTCTC	3 cut(s)	39, 313, 324
BstMCI	CGRYCG	1 cut(s)	58
BstNI	CCWGG	2 cut(s)	14, 448
BstPI	GGTNACC	1 cut(s)	259
BstSCI	CCNGG	2 cut(s)	12, 446
BstSFI	CTRYAG	1 cut(s)	385
BstZI	CGGCCG	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	57
BtsIMutI	CAGTG	2 cut(s)	386, 471
CaiI	CAGNNNCTG	1 cut(s)	412
CfoI	GCGC	1 cut(s)	7
Csp6I	GTAC	4 cut(s)	193, 213, 225, 316
CspCI	CAANNNNNGTGG	2 cut(s)	97, 132
CviAII	CATG	2 cut(s)	200, 319
CviJI	RGCY	3 cut(s)	57, 286, 494
CviKI_1	RGCY	3 cut(s)	57, 286, 494
CviQI	GTAC	4 cut(s)	193, 213, 225, 316
DdeI	CTNAG	1 cut(s)	435
EaeI	YGGCCR	1 cut(s)	55
EagI	CGGCCG	1 cut(s)	55
Eam1104I	CTCTTC	2 cut(s)	192, 276
EarI	CTCTTC	2 cut(s)	192, 276
EclXI	CGGCCG	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	108
Eco31I	GGTCTC	1 cut(s)	313
Eco52I	CGGCCG	1 cut(s)	55
Eco57I	CTGAAG	2 cut(s)	173, 297
Eco91I	GGTNACC	1 cut(s)	259
EcoNI	CCTNNNNNAGG	1 cut(s)	420
EcoO65I	GGTNACC	1 cut(s)	259
EcoRII	CCWGG	2 cut(s)	12, 446
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	2 cut(s)	203, 322
FaiI	YATR	4 cut(s)	201, 293, 320, 402
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FatI	CATG	2 cut(s)	199, 318
GlaI	GCGC	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	57
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	2 cut(s)	203, 322
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	1 cut(s)	376
HphI	GGTGA	1 cut(s)	253
Hpy188I	TCNGA	2 cut(s)	101, 277
Hpy188III	TCNNGA	2 cut(s)	232, 299
HpyAV	CCTTC	3 cut(s)	320, 364, 451
HpyCH4III	ACNGT	2 cut(s)	33, 475
HpyCH4IV	ACGT	2 cut(s)	195, 223
HpyCH4V	TGCA	2 cut(s)	29, 51
HpyF3I	CTNAG	1 cut(s)	435
HpySE526I	ACGT	2 cut(s)	195, 223
Hsp92II	CATG	2 cut(s)	203, 322
HspAI	GCGC	1 cut(s)	5
LguI	GCTCTTC	1 cut(s)	276
LweI	GCATC	1 cut(s)	135
MaeII	ACGT	2 cut(s)	195, 223
MaeIII	GTNAC	2 cut(s)	259, 469
MboII	GAAGA	4 cut(s)	179, 290, 293, 499
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	2 cut(s)	204, 294
MnlI	CCTC	7 cut(s)	165, 295, 298, 330, 416, 423, 459
MseI	TTAA	2 cut(s)	122, 499
MspR9I	CCNGG	2 cut(s)	14, 448
MvaI	CCWGG	2 cut(s)	14, 448
NlaIII	CATG	2 cut(s)	203, 322
NmuCI	GTSAC	2 cut(s)	259, 469
PciSI	GCTCTTC	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	376
Ppu21I	YACGTR	1 cut(s)	224
Psp6I	CCWGG	2 cut(s)	12, 446
PspEI	GGTNACC	1 cut(s)	259
PspGI	CCWGG	2 cut(s)	12, 446
PstNI	CAGNNNCTG	1 cut(s)	412
RsaI	GTAC	4 cut(s)	194, 214, 226, 317
RsaNI	GTAC	4 cut(s)	193, 213, 225, 316
SapI	GCTCTTC	1 cut(s)	276
SaqAI	TTAA	2 cut(s)	122, 499
ScrFI	CCNGG	2 cut(s)	14, 448
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	9 cut(s)	114, 118, 198, 226, 243, 261, 288, 309, 496
SfaNI	GCATC	1 cut(s)	135
SfcI	CTRYAG	1 cut(s)	385
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
Sse9I	AATT	2 cut(s)	204, 294
SsiI	CCGC	1 cut(s)	340
StyD4I	CCNGG	2 cut(s)	12, 446
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	2 cut(s)	33, 475
TaiI	ACGT	2 cut(s)	198, 226
TaqI	TCGA	1 cut(s)	177
TasI	AATT	2 cut(s)	204, 294
TatI	WGTACW	1 cut(s)	315
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	2 cut(s)	122, 499
Tru9I	TTAA	2 cut(s)	122, 499
TscAI	CASTG	2 cut(s)	386, 478
TseFI	GTSAC	2 cut(s)	259, 469
Tsp45I	GTSAC	2 cut(s)	259, 469
TspDTI	ATGAA	1 cut(s)	188
TspGWI	ACGGA	2 cut(s)	31, 60
TspRI	CASTG	2 cut(s)	386, 478
XagI	CCTNNNNNAGG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.