Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0013244

Physical Location & Seq

Genomic Coordinates Forward (+)

55751404 .. 55753600

Gene Structure 2197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG358700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGGTGTTGTGGGTTTTGTACAGGTAGGTGGTTTAAGCATCAAATGTGTGCGTGTTGGGGGAGTTGAAATCCCAAACAACAAGAGGGTCGAGTTTTCTCTTCAGTACGTTCATGGAATTGGGCGTACCAGAGCACGTACAATCCTGAACGACCTGAAAATGGAGAACAAGGTCACCAAAGACTTGTCTGAAGAAGAGCTTACTATAATTCGTGAGGAGGTCTCCAAGTACATGATTGAAGGAGACTTGAGGCGGTTCAATGCTTTGAACATTAGGAGATTGAAGGAGATTCAGTGCTACAGGGGGATAAGGCATATTCAGGGTCTGCCTTGTAGGGGGCAGAGGACTAAGAACAACACCAGGACTTTGAAGGGTAAGAGGGTCACTGTTGCTGGAAAGAAGAAAGCTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022613 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

137

Amino Acids

15.65

Weight (kDa)

10.55

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	18 - 122	8.3e-31	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14320 AT5G14320
fragaria_vesca	FvH4_2g26180
malus_domestica	MD05G1042800.v1.1
prunus_persica	Prupe.1G504800_v2.0.a1 Prupe.1G504800_v2.0.a1 Prupe.1G504800_v2.0.a1
pyrus_communis	pycom05g03540
rosa_chinensis	RchiOBHm_Chr6g0294611
rosa_laevigata	RLG00000011854
rosa_multiflora	Rmu_sc0006264.1_g000010
rosa_roxburghii	Rroxscaffold_7G00173160
rosa_rugosa	Rorug06G0246300
rosa_samantha	Rh6AG358700 Rh6BG365900 Rh6CG372500 Rh6DG359300
rosa_wichuraiana	Rw6G031300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	253
AcuI	CTGAAG	2 cut(s)	86, 210
AfaI	GTAC	5 cut(s)	21, 107, 127, 139, 230
AfiI	CCNNNNNNNGG	2 cut(s)	160, 335
AgsI	TTSAA	6 cut(s)	68, 239, 259, 268, 283, 370
AjnI	CCWGG	1 cut(s)	359
AluBI	AGCT	2 cut(s)	199, 407
AluI	AGCT	2 cut(s)	199, 407
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	2 cut(s)	226, 237
AlwNI	CAGNNNCTG	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	166
Bbv12I	GWGCWC	1 cut(s)	136
BciT130I	CCWGG	1 cut(s)	361
BcoDI	GTCTC	2 cut(s)	226, 237
BfmI	CTRYAG	1 cut(s)	298
Bme1390I	CCNGG	1 cut(s)	361
BmrFI	CCNGG	1 cut(s)	361
BmsI	GCATC	1 cut(s)	48
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
BpuEI	CTTGAG	1 cut(s)	268
BsaAI	YACGTR	1 cut(s)	137
BsaI	GGTCTC	1 cut(s)	226
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 335
BseBI	CCWGG	1 cut(s)	361
BseLI	CCNNNNNNNGG	2 cut(s)	160, 335
BseRI	GAGGAG	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	136
BslI	CCNNNNNNNGG	2 cut(s)	160, 335
BsmAI	GTCTC	2 cut(s)	226, 237
Bso31I	GGTCTC	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp1407I	TGTACA	1 cut(s)	19
BspACI	CCGC	1 cut(s)	253
BspQI	GCTCTTC	1 cut(s)	189
BspTNI	GGTCTC	1 cut(s)	226
BsrGI	TGTACA	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	361
Bst4CI	ACNGT	1 cut(s)	388
Bst6I	CTCTTC	2 cut(s)	105, 189
BstAUI	TGTACA	1 cut(s)	19
BstBAI	YACGTR	1 cut(s)	137
BstDEI	CTNAG	1 cut(s)	348
BstEII	GGTNACC	1 cut(s)	172
BstMAI	GTCTC	2 cut(s)	226, 237
BstNI	CCWGG	1 cut(s)	361
BstPI	GGTNACC	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	359
BstSFI	CTRYAG	1 cut(s)	298
BtsIMutI	CAGTG	2 cut(s)	299, 384
CaiI	CAGNNNCTG	1 cut(s)	325
Csp6I	GTAC	5 cut(s)	20, 106, 126, 138, 229
CviAII	CATG	2 cut(s)	113, 232
CviJI	RGCY	2 cut(s)	199, 407
CviKI_1	RGCY	2 cut(s)	199, 407
CviQI	GTAC	5 cut(s)	20, 106, 126, 138, 229
DdeI	CTNAG	1 cut(s)	348
Eam1104I	CTCTTC	2 cut(s)	105, 189
EarI	CTCTTC	2 cut(s)	105, 189
Eco31I	GGTCTC	1 cut(s)	226
Eco57I	CTGAAG	2 cut(s)	86, 210
Eco91I	GGTNACC	1 cut(s)	172
EcoO65I	GGTNACC	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	359
FaeI	CATG	2 cut(s)	116, 235
FaiI	YATR	4 cut(s)	114, 206, 233, 315
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FatI	CATG	2 cut(s)	112, 231
Hin1II	CATG	2 cut(s)	116, 235
HinfI	GANTC	1 cut(s)	289
HphI	GGTGA	1 cut(s)	166
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	2 cut(s)	145, 212
HpyAV	CCTTC	3 cut(s)	233, 277, 364
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4IV	ACGT	2 cut(s)	108, 136
HpyF3I	CTNAG	1 cut(s)	348
HpySE526I	ACGT	2 cut(s)	108, 136
Hsp92II	CATG	2 cut(s)	116, 235
LguI	GCTCTTC	1 cut(s)	189
LpnPI	CCDG	9 cut(s)	8, 142, 158, 167, 286, 305, 346, 373, 378
LweI	GCATC	1 cut(s)	48
MaeII	ACGT	2 cut(s)	108, 136
MaeIII	GTNAC	2 cut(s)	172, 382
MboII	GAAGA	4 cut(s)	92, 203, 206, 412
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	2 cut(s)	117, 207
MnlI	CCTC	6 cut(s)	78, 208, 211, 243, 336, 372
MseI	TTAA	2 cut(s)	35, 412
MspR9I	CCNGG	1 cut(s)	361
MvaI	CCWGG	1 cut(s)	361
NlaIII	CATG	2 cut(s)	116, 235
NmuCI	GTSAC	2 cut(s)	172, 382
PciSI	GCTCTTC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	289
Ppu21I	YACGTR	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	359
PspEI	GGTNACC	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	359
PstNI	CAGNNNCTG	1 cut(s)	325
RsaI	GTAC	5 cut(s)	21, 107, 127, 139, 230
RsaNI	GTAC	5 cut(s)	20, 106, 126, 138, 229
SapI	GCTCTTC	1 cut(s)	189
SaqAI	TTAA	2 cut(s)	35, 412
ScrFI	CCNGG	1 cut(s)	361
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	9 cut(s)	27, 31, 111, 139, 156, 174, 201, 222, 409
SfaNI	GCATC	1 cut(s)	48
SfcI	CTRYAG	1 cut(s)	298
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	2 cut(s)	117, 207
SsiI	CCGC	1 cut(s)	253
StyD4I	CCNGG	1 cut(s)	359
TaaI	ACNGT	1 cut(s)	388
TaiI	ACGT	2 cut(s)	111, 139
TaqI	TCGA	1 cut(s)	90
TasI	AATT	2 cut(s)	117, 207
TatI	WGTACW	2 cut(s)	19, 228
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	2 cut(s)	35, 412
Tru9I	TTAA	2 cut(s)	35, 412
TscAI	CASTG	2 cut(s)	299, 391
TseFI	GTSAC	2 cut(s)	172, 382
Tsp45I	GTSAC	2 cut(s)	172, 382
TspDTI	ATGAA	1 cut(s)	101
TspRI	CASTG	2 cut(s)	299, 391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.