Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006264.1

Orthogroup ID

OG0013244

Physical Location & Seq

Genomic Coordinates Reverse (-)

51538 .. 52224

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006264.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atgcctctggcaccgtctctctccctagtctgcaacggccgaaaccctaatccgttctctaccactctctcactcccagtcagaacccccaccaaggtaggtggtttaagcatcaaatgtgtgcgtgttgggggagttgaaatcccaaacaacaagagggtcgagttttctcttcagtacgttcatggaattgggcgtaccagagcacgtacaatcctgaacgacctgaaaatggagaacaaggtcaccaaagacttgtctgaagaagagcttactataattcgtgaggaggtctccaagtacatgattgaaggagacttgaggcggttcaatgctttgaacattaggagattgaaggagattcagtgctacagggggataaggcatattcagggtctgccttgtagggggcagaggactaagaacaacaccaggactttgaagggtaagagggtcactgttgctggaaagaagaaagctcgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022613 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

161

Amino Acids

18.22

Weight (kDa)

10.7

Isoelectric Point (pI)

49.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14320 AT5G14320
fragaria_vesca	FvH4_2g26180
malus_domestica	MD05G1042800.v1.1
prunus_persica	Prupe.1G504800_v2.0.a1 Prupe.1G504800_v2.0.a1 Prupe.1G504800_v2.0.a1
pyrus_communis	pycom05g03540
rosa_chinensis	RchiOBHm_Chr6g0294611
rosa_laevigata	RLG00000011854
rosa_multiflora	Rmu_sc0006264.1_g000010
rosa_roxburghii	Rroxscaffold_7G00173160
rosa_rugosa	Rorug06G0246300
rosa_samantha	Rh6AG358700 Rh6BG365900 Rh6CG372500 Rh6DG359300
rosa_wichuraiana	Rw6G031300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	10
AciI	CCGC	1 cut(s)	325
AcoI	YGGCCR	1 cut(s)	37
AcuI	CTGAAG	2 cut(s)	158, 282
AfaI	GTAC	4 cut(s)	179, 199, 211, 302
AfiI	CCNNNNNNNGG	3 cut(s)	94, 232, 407
AgsI	TTSAA	6 cut(s)	140, 311, 331, 340, 355, 442
AjnI	CCWGG	1 cut(s)	431
AluBI	AGCT	2 cut(s)	271, 479
AluI	AGCT	2 cut(s)	271, 479
Alw21I	GWGCWC	1 cut(s)	208
Alw26I	GTCTC	3 cut(s)	21, 298, 309
AlwNI	CAGNNNCTG	1 cut(s)	397
AoxI	GGCC	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	238
BanI	GGYRCC	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	208
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	433
BcoDI	GTCTC	3 cut(s)	21, 298, 309
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	370
Bme1390I	CCNGG	1 cut(s)	433
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	433
BmrI	ACTGGG	1 cut(s)	71
BmsI	GCATC	1 cut(s)	120
BmuI	ACTGGG	1 cut(s)	71
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
BpuEI	CTTGAG	1 cut(s)	340
BsaAI	YACGTR	1 cut(s)	209
BsaI	GGTCTC	1 cut(s)	298
BsaJI	CCNNGG	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	350, 380
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 232, 407
Bse1I	ACTGG	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	433
BseDI	CCNNGG	1 cut(s)	93
BseLI	CCNNNNNNNGG	3 cut(s)	94, 232, 407
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	302
BseX3I	CGGCCG	1 cut(s)	37
Bsh1285I	CGRYCG	1 cut(s)	40
BshFI	GGCC	1 cut(s)	39
BshNI	GGYRCC	1 cut(s)	10
BsiEI	CGRYCG	1 cut(s)	40
BsiHKAI	GWGCWC	1 cut(s)	208
BslI	CCNNNNNNNGG	3 cut(s)	94, 232, 407
BsmAI	GTCTC	3 cut(s)	21, 298, 309
BsmBI	CGTCTC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	39
Bso31I	GGTCTC	1 cut(s)	298
Bsp1286I	GDGCHC	1 cut(s)	208
BspACI	CCGC	1 cut(s)	325
BspANI	GGCC	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	261
BspT107I	GGYRCC	1 cut(s)	10
BspTNI	GGTCTC	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	433
Bst4CI	ACNGT	2 cut(s)	15, 460
Bst6I	CTCTTC	2 cut(s)	177, 261
BstBAI	YACGTR	1 cut(s)	209
BstDEI	CTNAG	1 cut(s)	420
BstEII	GGTNACC	1 cut(s)	244
BstMAI	GTCTC	3 cut(s)	21, 298, 309
BstMCI	CGRYCG	1 cut(s)	40
BstNI	CCWGG	1 cut(s)	433
BstPI	GGTNACC	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	431
BstSFI	CTRYAG	1 cut(s)	370
BstZI	CGGCCG	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	39
BtsIMutI	CAGTG	2 cut(s)	371, 456
CaiI	CAGNNNCTG	1 cut(s)	397
Csp6I	GTAC	4 cut(s)	178, 198, 210, 301
CspCI	CAANNNNNGTGG	2 cut(s)	82, 117
CviAII	CATG	2 cut(s)	185, 304
CviJI	RGCY	3 cut(s)	39, 271, 479
CviKI_1	RGCY	3 cut(s)	39, 271, 479
CviQI	GTAC	4 cut(s)	178, 198, 210, 301
DdeI	CTNAG	1 cut(s)	420
EaeI	YGGCCR	1 cut(s)	37
EagI	CGGCCG	1 cut(s)	37
Eam1104I	CTCTTC	2 cut(s)	177, 261
EarI	CTCTTC	2 cut(s)	177, 261
EclXI	CGGCCG	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	298
Eco52I	CGGCCG	1 cut(s)	37
Eco57I	CTGAAG	2 cut(s)	158, 282
Eco91I	GGTNACC	1 cut(s)	244
EcoO65I	GGTNACC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	431
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
Esp3I	CGTCTC	1 cut(s)	21
FaeI	CATG	2 cut(s)	188, 307
FaiI	YATR	4 cut(s)	186, 278, 305, 387
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FatI	CATG	2 cut(s)	184, 303
FspBI	CTAG	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	188, 307
HinfI	GANTC	1 cut(s)	361
HphI	GGTGA	1 cut(s)	238
Hpy188I	TCNGA	2 cut(s)	83, 262
Hpy188III	TCNNGA	2 cut(s)	217, 284
HpyAV	CCTTC	3 cut(s)	305, 349, 436
HpyCH4III	ACNGT	2 cut(s)	15, 460
HpyCH4IV	ACGT	2 cut(s)	180, 208
HpyCH4V	TGCA	1 cut(s)	33
HpyF3I	CTNAG	1 cut(s)	420
HpySE526I	ACGT	2 cut(s)	180, 208
Hsp92II	CATG	2 cut(s)	188, 307
LguI	GCTCTTC	1 cut(s)	261
LpnPI	CCDG	9 cut(s)	90, 214, 230, 239, 358, 377, 418, 445, 450
LweI	GCATC	1 cut(s)	120
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	2 cut(s)	180, 208
MaeIII	GTNAC	2 cut(s)	244, 454
MboII	GAAGA	4 cut(s)	164, 275, 278, 484
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	2 cut(s)	189, 279
MnlI	CCTC	7 cut(s)	15, 150, 280, 283, 315, 408, 444
MseI	TTAA	2 cut(s)	107, 484
MspR9I	CCNGG	1 cut(s)	433
MvaI	CCWGG	1 cut(s)	433
NlaIII	CATG	2 cut(s)	188, 307
NlaIV	GGNNCC	1 cut(s)	12
NmuCI	GTSAC	2 cut(s)	244, 454
PciSI	GCTCTTC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	361
Ppu21I	YACGTR	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	431
PspEI	GGTNACC	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	431
PspN4I	GGNNCC	1 cut(s)	12
PstNI	CAGNNNCTG	1 cut(s)	397
RsaI	GTAC	4 cut(s)	179, 199, 211, 302
RsaNI	GTAC	4 cut(s)	178, 198, 210, 301
SapI	GCTCTTC	1 cut(s)	261
SaqAI	TTAA	2 cut(s)	107, 484
ScrFI	CCNGG	1 cut(s)	433
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	9 cut(s)	99, 103, 183, 211, 228, 246, 273, 294, 481
SfaNI	GCATC	1 cut(s)	120
SfcI	CTRYAG	1 cut(s)	370
SmlI	CTYRAG	1 cut(s)	319
SmoI	CTYRAG	1 cut(s)	319
Sse9I	AATT	2 cut(s)	189, 279
SsiI	CCGC	1 cut(s)	325
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	1 cut(s)	431
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	2 cut(s)	15, 460
TaiI	ACGT	2 cut(s)	183, 211
TaqI	TCGA	1 cut(s)	162
TasI	AATT	2 cut(s)	189, 279
TatI	WGTACW	1 cut(s)	300
TfiI	GAWTC	1 cut(s)	361
Tru1I	TTAA	2 cut(s)	107, 484
Tru9I	TTAA	2 cut(s)	107, 484
TscAI	CASTG	2 cut(s)	371, 463
TseFI	GTSAC	2 cut(s)	244, 454
Tsp45I	GTSAC	2 cut(s)	244, 454
TspDTI	ATGAA	1 cut(s)	173
TspGWI	ACGGA	1 cut(s)	42
TspRI	CASTG	2 cut(s)	371, 463
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.