Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0013244

Physical Location & Seq

Genomic Coordinates Forward (+)

39237678 .. 39238140

Gene Structure 463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0246300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGAGGCCCTTGGTTCTATCGTAATACTATGCTTGGTGGGTGAATATGATGGGCTCGGTGTGGTGGAGGAAATGCCGCTGAATATGATGGAAACCTGGGTAGCCGTGAAGGGTCTTCCTCTTGCCCTGAGAAACAAGATGGCGCTCGCTATGGTGGGTCCGTCGCTAGGGAGGGTGATTCGGGTGGATCAAAATGCCTTGAAAAGGAAAGAAGAAGAACATAGAATCAAGATAGTGTTTGATGTCCGTCACCAGATTCGTATATGGAAGGTCTTTGAGTTTTCTCCAGTGGGGTTTTGTTGTGACTGTGGGTTGTTCCTTTATGATGCCCTAGGCTGTGACAAAATTTTGATCAAAGAGAAGGAGGAGATTCAGGCTAAACCATCGGCGACTGCCATGGCGGGGTTGTCCACTTGTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022613 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

140

Amino Acids

15.57

Weight (kDa)

6.13

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14320 AT5G14320
fragaria_vesca	FvH4_2g26180
malus_domestica	MD05G1042800.v1.1
prunus_persica	Prupe.1G504800_v2.0.a1 Prupe.1G504800_v2.0.a1 Prupe.1G504800_v2.0.a1
pyrus_communis	pycom05g03540
rosa_chinensis	RchiOBHm_Chr6g0294611
rosa_laevigata	RLG00000011854
rosa_multiflora	Rmu_sc0006264.1_g000010
rosa_roxburghii	Rroxscaffold_7G00173160
rosa_rugosa	Rorug06G0246300
rosa_samantha	Rh6AG358700 Rh6BG365900 Rh6CG372500 Rh6DG359300
rosa_wichuraiana	Rw6G031300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	77, 401
AclWI	GGATC	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	345
AfiI	CCNNNNNNNGG	3 cut(s)	167, 204, 402
AgsI	TTSAA	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	95
AlwI	GGATC	1 cut(s)	195
AoxI	GGCC	1 cut(s)	6
ApoI	RAATTY	1 cut(s)	345
AspA2I	CCTAGG	1 cut(s)	331
AspLEI	GCGC	1 cut(s)	145
AspS9I	GGNCC	2 cut(s)	7, 158
AsuHPI	GGTGA	3 cut(s)	53, 187, 242
AvaII	GGWCC	1 cut(s)	158
AvrII	CCTAGG	1 cut(s)	331
BanII	GRGCYC	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	107
BccI	CCATC	4 cut(s)	44, 82, 133, 391
BceAI	ACGGC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	97
BclI	TGATCA	1 cut(s)	351
BfaI	CTAG	2 cut(s)	167, 332
BfoI	RGCGCY	1 cut(s)	146
BisI	GCNGC	1 cut(s)	77
BlnI	CCTAGG	1 cut(s)	331
BlsI	GCNGC	1 cut(s)	78
Bme1390I	CCNGG	1 cut(s)	97
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	2 cut(s)	7, 158
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	97
BmsI	GCATC	1 cut(s)	316
BpiI	GAAGAC	1 cut(s)	107
BpmI	CTGGAG	1 cut(s)	270
BsaJI	CCNNGG	4 cut(s)	10, 96, 331, 396
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 204, 402
Bse1I	ACTGG	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	97
BseDI	CCNNGG	4 cut(s)	10, 96, 331, 396
BseLI	CCNNNNNNNGG	3 cut(s)	167, 204, 402
BseMII	CTCAG	1 cut(s)	119
BseNI	ACTGG	1 cut(s)	287
BseRI	GAGGAG	1 cut(s)	380
BshFI	GGCC	1 cut(s)	8
BslI	CCNNNNNNNGG	3 cut(s)	167, 204, 402
BsnI	GGCC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	2 cut(s)	187, 351
Bsp19I	CCATGG	1 cut(s)	396
BspACI	CCGC	2 cut(s)	77, 401
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	159
BspPI	GGATC	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	287
BssECI	CCNNGG	4 cut(s)	10, 96, 331, 396
BssMI	GATC	2 cut(s)	187, 351
BssT1I	CCWWGG	3 cut(s)	10, 331, 396
Bst2UI	CCWGG	1 cut(s)	97
Bst4CI	ACNGT	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	1 cut(s)	128
BstDSI	CCRYGG	1 cut(s)	396
BstENI	CCTNNNNNAGG	1 cut(s)	202
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	2 cut(s)	190, 354
BstMBI	GATC	2 cut(s)	187, 351
BstNI	CCWGG	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	95
BstV2I	GAAGAC	1 cut(s)	107
BsuRI	GGCC	1 cut(s)	8
BtgI	CCRYGG	1 cut(s)	396
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	147
CfoI	GCGC	1 cut(s)	145
Cfr13I	GGNCC	2 cut(s)	7, 158
CviAII	CATG	1 cut(s)	397
CviJI	RGCY	5 cut(s)	8, 55, 104, 336, 377
CviKI_1	RGCY	5 cut(s)	8, 55, 104, 336, 377
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	2 cut(s)	189, 353
DpnII	GATC	2 cut(s)	187, 351
Eco130I	CCWWGG	3 cut(s)	10, 331, 396
Eco24I	GRGCYC	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	158
EcoNI	CCTNNNNNAGG	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	95
EcoT14I	CCWWGG	3 cut(s)	10, 331, 396
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	3 cut(s)	10, 331, 396
FaeI	CATG	1 cut(s)	400
FaiI	YATR	9 cut(s)	31, 48, 86, 152, 222, 263, 265, 324, 398
FatI	CATG	1 cut(s)	396
FauI	CCCGC	1 cut(s)	394
FbaI	TGATCA	1 cut(s)	351
Fnu4HI	GCNGC	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	77
FspBI	CTAG	2 cut(s)	167, 332
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	1 cut(s)	77
GsuI	CTGGAG	1 cut(s)	270
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	8
HhaI	GCGC	1 cut(s)	145
Hin1II	CATG	1 cut(s)	400
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HinfI	GANTC	4 cut(s)	178, 225, 256, 370
HphI	GGTGA	3 cut(s)	53, 187, 242
Hpy166II	GTNNAC	1 cut(s)	411
Hpy188III	TCNNGA	1 cut(s)	229
Hpy8I	GTNNAC	1 cut(s)	411
Hpy99I	CGWCG	1 cut(s)	166
HpyAV	CCTTC	3 cut(s)	103, 262, 355
HpyCH4III	ACNGT	1 cut(s)	308
HpyF3I	CTNAG	1 cut(s)	128
Hsp92II	CATG	1 cut(s)	400
HspAI	GCGC	1 cut(s)	143
Ksp22I	TGATCA	1 cut(s)	351
Kzo9I	GATC	2 cut(s)	187, 351
LpnPI	CCDG	6 cut(s)	82, 109, 140, 266, 300, 359
LweI	GCATC	1 cut(s)	316
MaeI	CTAG	2 cut(s)	167, 332
MaeIII	GTNAC	3 cut(s)	248, 302, 338
MalI	GATC	2 cut(s)	189, 353
MboI	GATC	2 cut(s)	187, 351
MboII	GAAGA	3 cut(s)	107, 224, 227
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	1 cut(s)	345
MnlI	CCTC	4 cut(s)	61, 129, 165, 358
MspA1I	CMGCKG	1 cut(s)	79
MspR9I	CCNGG	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	97
NcoI	CCATGG	1 cut(s)	396
NdeII	GATC	2 cut(s)	187, 351
NlaIII	CATG	1 cut(s)	400
NlaIV	GGNNCC	1 cut(s)	159
NmuCI	GTSAC	3 cut(s)	248, 302, 338
PfeI	GAWTC	4 cut(s)	178, 225, 256, 370
PkrI	GCNGC	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	2 cut(s)	7, 158
SatI	GCNGC	1 cut(s)	77
Sau3AI	GATC	2 cut(s)	187, 351
Sau96I	GGNCC	2 cut(s)	7, 158
ScrFI	CCNGG	1 cut(s)	97
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	2 cut(s)	98, 273
SfaNI	GCATC	1 cut(s)	316
SinI	GGWCC	1 cut(s)	158
Sse9I	AATT	1 cut(s)	345
SsiI	CCGC	2 cut(s)	77, 401
SspMI	CTAG	2 cut(s)	167, 332
StyD4I	CCNGG	1 cut(s)	95
StyI	CCWWGG	3 cut(s)	10, 331, 396
TaaI	ACNGT	1 cut(s)	308
TasI	AATT	1 cut(s)	345
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	4 cut(s)	178, 225, 256, 370
TscAI	CASTG	1 cut(s)	294
TseFI	GTSAC	3 cut(s)	248, 302, 338
Tsp45I	GTSAC	3 cut(s)	248, 302, 338
TspGWI	ACGGA	2 cut(s)	150, 236
TspRI	CASTG	1 cut(s)	294
VpaK11BI	GGWCC	1 cut(s)	158
XagI	CCTNNNNNAGG	1 cut(s)	202
XapI	RAATTY	1 cut(s)	345
XmaJI	CCTAGG	1 cut(s)	331
XspI	CTAG	2 cut(s)	167, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.