Rh6BG365900

Belongs to the universal ribosomal protein uS13 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013244
Physical Location & Seq
Forward (+)
59459337 .. 59460854
1518 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG365900.1

Sequence Viewer

Length: 468 bp
ATGGCGCAAACCCTGGCAATGCCTCTGGCGCCGTCTCTCTCCGTAGTCTGCAACGGCCGAAACCCTAATCCGTTCTCTACCACTCTCTCACTCCCAGTCAGAACCCCAAACAAGGTAGGTGGTTTAAGCATCAAATGTGTGCGTGTTGGCGGAGTTGAAATCCCAAACAACAAGAGGGTGGAGTTTTCTCTTCAGTACGTTCATGGAATTGGGCGTACCCGAGCACGTACAATCCTGAACGACCTGAAAATGGAGAACAAGGTCACCAAAGACTTGTCTGAAGAAGAGCTTACTATAATTCGTGAGGAGGTCTCCAAGTACATGATTGAAGGAGACTTGGTAAGACTCTCAAATTTGGTTTCTTTTAGAGTGTGTGATTTTATATTGGGGATTGGGGTTTTGATGGAATTGGGTTCTGTGTGTGTGTGTGTGTGTGTTGCAGAGGCGGTTCAATGCTTTGAACATTAG

Protein Analysis

155

Amino Acids

17.04

Weight (kDa)

7.56

Isoelectric Point (pI)

40.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S13 PF00416 48 - 108 2.6e-13 Ribosomal protein S13/S18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14320 AT5G14320
fragaria_vesca FvH4_2g26180
malus_domestica MD05G1042800.v1.1
prunus_persica Prupe.1G504800_v2.0.a1 Prupe.1G504800_v2.0.a1 Prupe.1G504800_v2.0.a1
pyrus_communis pycom05g03540
rosa_chinensis RchiOBHm_Chr6g0294611
rosa_laevigata RLG00000011854
rosa_multiflora Rmu_sc0006264.1_g000010
rosa_roxburghii Rroxscaffold_7G00173160
rosa_rugosa Rorug06G0246300
rosa_samantha Rh6AG358700 Rh6BG365900 Rh6CG372500 Rh6DG359300
rosa_wichuraiana Rw6G031300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 28
AciI CCGC 2 cut(s) 150, 446
AcoI YGGCCR 1 cut(s) 55
AcsI RAATTY 1 cut(s) 352
AcuI CTGAAG 2 cut(s) 176, 300
AcyI GRCGYC 1 cut(s) 29
AfaI GTAC 4 cut(s) 197, 217, 229, 320
AfiI CCNNNNNNNGG 2 cut(s) 112, 250
AgsI TTSAA 4 cut(s) 158, 329, 452, 461
AjnI CCWGG 1 cut(s) 12
AluBI AGCT 1 cut(s) 289
AluI AGCT 1 cut(s) 289
Alw21I GWGCWC 1 cut(s) 226
Alw26I GTCTC 3 cut(s) 39, 316, 327
Ama87I CYCGRG 1 cut(s) 219
AoxI GGCC 1 cut(s) 55
ApoI RAATTY 1 cut(s) 352
AspLEI GCGC 2 cut(s) 7, 31
AsuHPI GGTGA 1 cut(s) 256
AvaI CYCGRG 1 cut(s) 219
BanI GGYRCC 1 cut(s) 28
Bbv12I GWGCWC 1 cut(s) 226
BccI CCATC 1 cut(s) 397
BceAI ACGGC 2 cut(s) 16, 70
BciT130I CCWGG 1 cut(s) 14
BcoDI GTCTC 3 cut(s) 39, 316, 327
BfoI RGCGCY 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 14
BmeT110I CYCGRG 1 cut(s) 219
BmiI GGNNCC 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 14
BmrI ACTGGG 1 cut(s) 89
BmsI GCATC 1 cut(s) 138
BmuI ACTGGG 1 cut(s) 89
BplI GAGNNNNNCTC 2 cut(s) 296, 328
BsaAI YACGTR 1 cut(s) 227
BsaHI GRCGYC 1 cut(s) 29
BsaI GGTCTC 1 cut(s) 316
BsaJI CCNNGG 1 cut(s) 12
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 250
Bse1I ACTGG 1 cut(s) 95
Bse3DI GCAATG 1 cut(s) 24
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 12
BseLI CCNNNNNNNGG 2 cut(s) 112, 250
BseMI GCAATG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 95
BseRI GAGGAG 1 cut(s) 320
BseX3I CGGCCG 1 cut(s) 55
Bsh1285I CGRYCG 1 cut(s) 58
BshFI GGCC 1 cut(s) 57
BshNI GGYRCC 1 cut(s) 28
BsiEI CGRYCG 1 cut(s) 58
BsiHKAI GWGCWC 1 cut(s) 226
BsiHKCI CYCGRG 1 cut(s) 219
BslI CCNNNNNNNGG 2 cut(s) 112, 250
BsmAI GTCTC 3 cut(s) 39, 316, 327
BsmBI CGTCTC 1 cut(s) 39
BsnI GGCC 1 cut(s) 57
Bso31I GGTCTC 1 cut(s) 316
BsoBI CYCGRG 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 226
BspACI CCGC 2 cut(s) 150, 446
BspANI GGCC 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 30
BspQI GCTCTTC 1 cut(s) 279
BspT107I GGYRCC 1 cut(s) 28
BspTNI GGTCTC 1 cut(s) 316
BsrDI GCAATG 1 cut(s) 24
BsrI ACTGG 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 12
BssNI GRCGYC 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 14
Bst6I CTCTTC 2 cut(s) 195, 279
BstACI GRCGYC 1 cut(s) 29
BstBAI YACGTR 1 cut(s) 227
BstEII GGTNACC 1 cut(s) 262
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 2 cut(s) 7, 31
BstMAI GTCTC 3 cut(s) 39, 316, 327
BstMCI CGRYCG 1 cut(s) 58
BstMWI GCNNNNNNNGC 1 cut(s) 28
BstNI CCWGG 1 cut(s) 14
BstPI GGTNACC 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 12
BstZI CGGCCG 1 cut(s) 55
BsuRI GGCC 1 cut(s) 57
CfoI GCGC 2 cut(s) 7, 31
Csp6I GTAC 4 cut(s) 196, 216, 228, 319
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviAII CATG 2 cut(s) 203, 322
CviJI RGCY 2 cut(s) 57, 289
CviKI_1 RGCY 2 cut(s) 57, 289
CviQI GTAC 4 cut(s) 196, 216, 228, 319
DinI GGCGCC 1 cut(s) 30
EaeI YGGCCR 1 cut(s) 55
EagI CGGCCG 1 cut(s) 55
Eam1104I CTCTTC 2 cut(s) 195, 279
EarI CTCTTC 2 cut(s) 195, 279
EciI GGCGGA 1 cut(s) 165
EclXI CGGCCG 1 cut(s) 55
Eco31I GGTCTC 1 cut(s) 316
Eco52I CGGCCG 1 cut(s) 55
Eco57I CTGAAG 2 cut(s) 176, 300
Eco88I CYCGRG 1 cut(s) 219
Eco91I GGTNACC 1 cut(s) 262
EcoO65I GGTNACC 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 12
EgeI GGCGCC 1 cut(s) 30
EheI GGCGCC 1 cut(s) 30
Esp3I CGTCTC 1 cut(s) 39
FaeI CATG 2 cut(s) 206, 325
FaiI YATR 4 cut(s) 204, 296, 323, 383
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FatI CATG 2 cut(s) 202, 321
GlaI GCGC 2 cut(s) 6, 30
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 1 cut(s) 57
HhaI GCGC 2 cut(s) 7, 31
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 2 cut(s) 206, 325
Hin6I GCGC 2 cut(s) 5, 29
HinP1I GCGC 2 cut(s) 5, 29
HinfI GANTC 1 cut(s) 345
HphI GGTGA 1 cut(s) 256
Hpy188I TCNGA 2 cut(s) 101, 280
Hpy188III TCNNGA 2 cut(s) 235, 302
HpyAV CCTTC 1 cut(s) 323
HpyCH4IV ACGT 2 cut(s) 198, 226
HpyCH4V TGCA 2 cut(s) 51, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 28
HpySE526I ACGT 2 cut(s) 198, 226
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 2 cut(s) 206, 325
HspAI GCGC 2 cut(s) 5, 29
KasI GGCGCC 1 cut(s) 28
LguI GCTCTTC 1 cut(s) 279
LpnPI CCDG 5 cut(s) 11, 26, 108, 248, 257
LweI GCATC 1 cut(s) 138
MaeII ACGT 2 cut(s) 198, 226
MaeIII GTNAC 1 cut(s) 262
MboII GAAGA 3 cut(s) 182, 293, 296
MhlI GDGCHC 1 cut(s) 226
MluCI AATT 4 cut(s) 207, 297, 352, 407
Mly113I GGCGCC 1 cut(s) 29
MlyI GAGTC 1 cut(s) 339
MnlI CCTC 5 cut(s) 33, 168, 298, 301, 436
MseI TTAA 1 cut(s) 125
MspR9I CCNGG 1 cut(s) 14
MvaI CCWGG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 28
NarI GGCGCC 1 cut(s) 29
NlaIII CATG 2 cut(s) 206, 325
NlaIV GGNNCC 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 262
PciSI GCTCTTC 1 cut(s) 279
PleI GAGTC 1 cut(s) 339
PluTI GGCGCC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 339
Ppu21I YACGTR 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 12
PspEI GGTNACC 1 cut(s) 262
PspGI CCWGG 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 30
RsaI GTAC 4 cut(s) 197, 217, 229, 320
RsaNI GTAC 4 cut(s) 196, 216, 228, 319
SapI GCTCTTC 1 cut(s) 279
SaqAI TTAA 1 cut(s) 125
SchI GAGTC 1 cut(s) 339
ScrFI CCNGG 1 cut(s) 14
SduI GDGCHC 1 cut(s) 226
SetI ASST 8 cut(s) 117, 121, 201, 229, 246, 264, 291, 312
SfaNI GCATC 1 cut(s) 138
SfoI GGCGCC 1 cut(s) 30
Sse9I AATT 4 cut(s) 207, 297, 352, 407
SsiI CCGC 2 cut(s) 150, 446
SspDI GGCGCC 1 cut(s) 28
StyD4I CCNGG 1 cut(s) 12
TaiI ACGT 2 cut(s) 201, 229
TasI AATT 4 cut(s) 207, 297, 352, 407
TatI WGTACW 1 cut(s) 318
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TseFI GTSAC 1 cut(s) 262
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 191
TspGWI ACGGA 2 cut(s) 31, 60
XapI RAATTY 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.