Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0013244

Physical Location & Seq

Genomic Coordinates Forward (+)

21068310 .. 21069388

Gene Structure 1079 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g26180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCGCAAACTCTGGCAATGCCTCTGGCGCCGTCTCTCTCCGTAGTCTGCACCGGTCGGAACCCCAACCCTTTCTCCACCACTCTCTCACTCCCCATCAAAACCCCCACCAAGGTGGGTGGCTTAAGCATCAGATGTGTGCGTGTTGGTGGAGTTGAGATCCCAAACAACAAGAGGGTCGAGTTTTCGCTTCAGTACGTTCATGGAATTGGGCGTACGAGAGCACGTACAATCCTGAACGACTTGAAAATGGAGAACAAGGTCACTAAAGACTTGTCTGAAGAAGAGCTCACTATTATACGTGAGGAGGTCTCAAAGTACATGATTGAAGGAGACTTGAGGCGGTTTAATGCGTTGAACATTAGGAGGTTGAAGGAGATTCAGTGCTACAGGGGGATAAGGCATATTCAGGGTCTGCCTTGTAGAGGGCAGAGGACTAAGAACAACACCAGGACTTTGAAGGGTAAGAGGGTCACTGTTGCCGGAAAGAAGAAAGCTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022613 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

168

Amino Acids

18.83

Weight (kDa)

10.7

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	48 - 152	1.5e-30	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14320 AT5G14320
fragaria_vesca	FvH4_2g26180
malus_domestica	MD05G1042800.v1.1
prunus_persica	Prupe.1G504800_v2.0.a1 Prupe.1G504800_v2.0.a1 Prupe.1G504800_v2.0.a1
pyrus_communis	pycom05g03540
rosa_chinensis	RchiOBHm_Chr6g0294611
rosa_laevigata	RLG00000011854
rosa_multiflora	Rmu_sc0006264.1_g000010
rosa_roxburghii	Rroxscaffold_7G00173160
rosa_rugosa	Rorug06G0246300
rosa_samantha	Rh6AG358700 Rh6BG365900 Rh6CG372500 Rh6DG359300
rosa_wichuraiana	Rw6G031300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	28
AciI	CCGC	1 cut(s)	343
AclWI	GGATC	1 cut(s)	154
AcuI	CTGAAG	2 cut(s)	176, 300
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	4 cut(s)	197, 217, 229, 320
AfiI	CCNNNNNNNGG	2 cut(s)	112, 425
AflII	CTTAAG	1 cut(s)	124
AgeI	ACCGGT	1 cut(s)	53
AgsI	TTSAA	5 cut(s)	247, 329, 358, 373, 460
AjnI	CCWGG	1 cut(s)	449
AleI	CACNNNNGTG	1 cut(s)	113
AluBI	AGCT	2 cut(s)	289, 497
AluI	AGCT	2 cut(s)	289, 497
Alw21I	GWGCWC	2 cut(s)	226, 291
Alw26I	GTCTC	3 cut(s)	39, 316, 327
AlwI	GGATC	1 cut(s)	154
AlwNI	CAGNNNCTG	1 cut(s)	415
AsiGI	ACCGGT	1 cut(s)	53
AspLEI	GCGC	2 cut(s)	7, 31
BanI	GGYRCC	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	291
Bbv12I	GWGCWC	2 cut(s)	226, 291
BccI	CCATC	1 cut(s)	104
BceAI	ACGGC	1 cut(s)	16
BciT130I	CCWGG	1 cut(s)	451
BcoDI	GTCTC	3 cut(s)	39, 316, 327
BfmI	CTRYAG	1 cut(s)	388
BfoI	RGCGCY	1 cut(s)	32
BfrI	CTTAAG	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	451
BmiI	GGNNCC	2 cut(s)	30, 62
BmrFI	CCNGG	1 cut(s)	451
BmsI	GCATC	1 cut(s)	138
BplI	GAGNNNNNCTC	2 cut(s)	296, 328
BpuEI	CTTGAG	1 cut(s)	358
BsaAI	YACGTR	2 cut(s)	227, 302
BsaHI	GRCGYC	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	111
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	4 cut(s)	59, 89, 368, 398
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 425
Bse118I	RCCGGY	1 cut(s)	53
Bse3DI	GCAATG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	451
BseDI	CCNNGG	1 cut(s)	111
BseLI	CCNNNNNNNGG	2 cut(s)	112, 425
BseMI	GCAATG	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	320
BsgI	GTGCAG	1 cut(s)	34
Bsh1285I	CGRYCG	1 cut(s)	58
BshNI	GGYRCC	1 cut(s)	28
BshTI	ACCGGT	1 cut(s)	53
BsiEI	CGRYCG	1 cut(s)	58
BsiHKAI	GWGCWC	2 cut(s)	226, 291
BsiSI	CCGG	2 cut(s)	54, 483
BsiWI	CGTACG	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	112, 425
BsmAI	GTCTC	3 cut(s)	39, 316, 327
BsmBI	CGTCTC	1 cut(s)	39
Bso31I	GGTCTC	1 cut(s)	316
Bsp1286I	GDGCHC	2 cut(s)	226, 291
Bsp143I	GATC	1 cut(s)	159
BspACI	CCGC	1 cut(s)	343
BspLI	GGNNCC	2 cut(s)	30, 62
BspPI	GGATC	1 cut(s)	154
BspQI	GCTCTTC	1 cut(s)	279
BspT107I	GGYRCC	1 cut(s)	28
BspTI	CTTAAG	1 cut(s)	124
BspTNI	GGTCTC	1 cut(s)	316
BsrDI	GCAATG	1 cut(s)	24
BsrFI	RCCGGY	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	1 cut(s)	159
BssNI	GRCGYC	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	451
Bst4CI	ACNGT	1 cut(s)	478
Bst6I	CTCTTC	1 cut(s)	279
BstACI	GRCGYC	1 cut(s)	29
BstAFI	CTTAAG	1 cut(s)	124
BstBAI	YACGTR	2 cut(s)	227, 302
BstDEI	CTNAG	1 cut(s)	438
BstENI	CCTNNNNNAGG	1 cut(s)	423
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	2 cut(s)	7, 31
BstKTI	GATC	1 cut(s)	162
BstMAI	GTCTC	3 cut(s)	39, 316, 327
BstMBI	GATC	1 cut(s)	159
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstNI	CCWGG	1 cut(s)	451
BstSCI	CCNGG	1 cut(s)	449
BstSFI	CTRYAG	1 cut(s)	388
BstX2I	RGATCY	1 cut(s)	159
BstXI	CCANNNNNNTGG	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	159
BtsIMutI	CAGTG	2 cut(s)	389, 474
CaiI	CAGNNNCTG	1 cut(s)	415
CfoI	GCGC	2 cut(s)	7, 31
Cfr10I	RCCGGY	1 cut(s)	53
Csp6I	GTAC	4 cut(s)	196, 216, 228, 319
CspAI	ACCGGT	1 cut(s)	53
CspCI	CAANNNNNGTGG	2 cut(s)	100, 135
CviAII	CATG	2 cut(s)	203, 322
CviJI	RGCY	3 cut(s)	123, 289, 497
CviKI_1	RGCY	3 cut(s)	123, 289, 497
CviQI	GTAC	4 cut(s)	196, 216, 228, 319
DdeI	CTNAG	1 cut(s)	438
DinI	GGCGCC	1 cut(s)	30
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Ecl136II	GAGCTC	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	291
Eco31I	GGTCTC	1 cut(s)	316
Eco53kI	GAGCTC	1 cut(s)	289
Eco57I	CTGAAG	2 cut(s)	176, 300
EcoICRI	GAGCTC	1 cut(s)	289
EcoNI	CCTNNNNNAGG	1 cut(s)	423
EcoRII	CCWGG	1 cut(s)	449
EcoT14I	CCWWGG	1 cut(s)	111
EcoT38I	GRGCYC	1 cut(s)	291
EgeI	GGCGCC	1 cut(s)	30
EheI	GGCGCC	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	111
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	2 cut(s)	206, 325
FaiI	YATR	4 cut(s)	204, 299, 323, 405
FatI	CATG	2 cut(s)	202, 321
FriOI	GRGCYC	1 cut(s)	291
GlaI	GCGC	2 cut(s)	6, 30
HaeII	RGCGCY	1 cut(s)	32
HapII	CCGG	2 cut(s)	54, 483
HhaI	GCGC	2 cut(s)	7, 31
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	2 cut(s)	206, 325
Hin6I	GCGC	2 cut(s)	5, 29
HinP1I	GCGC	2 cut(s)	5, 29
HinfI	GANTC	1 cut(s)	379
HpaII	CCGG	2 cut(s)	54, 483
Hpy188I	TCNGA	3 cut(s)	60, 134, 280
Hpy188III	TCNNGA	1 cut(s)	235
HpyAV	CCTTC	3 cut(s)	323, 367, 454
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4IV	ACGT	3 cut(s)	198, 226, 301
HpyCH4V	TGCA	1 cut(s)	51
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpyF3I	CTNAG	1 cut(s)	438
HpySE526I	ACGT	3 cut(s)	198, 226, 301
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	2 cut(s)	206, 325
HspAI	GCGC	2 cut(s)	5, 29
KasI	GGCGCC	1 cut(s)	28
Kzo9I	GATC	1 cut(s)	159
LguI	GCTCTTC	1 cut(s)	279
LpnPI	CCDG	8 cut(s)	11, 67, 248, 376, 395, 436, 463, 496
LweI	GCATC	1 cut(s)	138
MaeII	ACGT	3 cut(s)	198, 226, 301
MaeIII	GTNAC	2 cut(s)	262, 472
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	3 cut(s)	293, 296, 502
MflI	RGATCY	1 cut(s)	159
MhlI	GDGCHC	2 cut(s)	226, 291
MluCI	AATT	1 cut(s)	207
Mly113I	GGCGCC	1 cut(s)	29
MmeI	TCCRAC	1 cut(s)	38
MnlI	CCTC	9 cut(s)	33, 168, 298, 301, 333, 360, 419, 426, 462
MseI	TTAA	3 cut(s)	125, 348, 502
MslI	CAYNNNNRTG	1 cut(s)	113
MspCI	CTTAAG	1 cut(s)	124
MspI	CCGG	2 cut(s)	54, 483
MspR9I	CCNGG	1 cut(s)	451
MvaI	CCWGG	1 cut(s)	451
MwoI	GCNNNNNNNGC	1 cut(s)	28
NarI	GGCGCC	1 cut(s)	29
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	2 cut(s)	206, 325
NlaIV	GGNNCC	2 cut(s)	30, 62
NmuCI	GTSAC	2 cut(s)	262, 472
OliI	CACNNNNGTG	1 cut(s)	113
PciSI	GCTCTTC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	379
Pfl23II	CGTACG	1 cut(s)	215
PinAI	ACCGGT	1 cut(s)	53
PluTI	GGCGCC	1 cut(s)	32
Ppu21I	YACGTR	2 cut(s)	227, 302
Psp124BI	GAGCTC	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	449
PspGI	CCWGG	1 cut(s)	449
PspLI	CGTACG	1 cut(s)	215
PspN4I	GGNNCC	2 cut(s)	30, 62
PstNI	CAGNNNCTG	1 cut(s)	415
PsuI	RGATCY	1 cut(s)	159
RsaI	GTAC	4 cut(s)	197, 217, 229, 320
RsaNI	GTAC	4 cut(s)	196, 216, 228, 319
RseI	CAYNNNNRTG	1 cut(s)	113
SacI	GAGCTC	1 cut(s)	291
SapI	GCTCTTC	1 cut(s)	279
SaqAI	TTAA	3 cut(s)	125, 348, 502
Sau3AI	GATC	1 cut(s)	159
ScrFI	CCNGG	1 cut(s)	451
SduI	GDGCHC	2 cut(s)	226, 291
SetI	ASST	9 cut(s)	117, 201, 229, 264, 291, 304, 312, 371, 499
SfaNI	GCATC	1 cut(s)	138
SfcI	CTRYAG	1 cut(s)	388
SfoI	GGCGCC	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	2 cut(s)	124, 337
SmoI	CTYRAG	2 cut(s)	124, 337
Sse9I	AATT	1 cut(s)	207
SsiI	CCGC	1 cut(s)	343
SspDI	GGCGCC	1 cut(s)	28
SstI	GAGCTC	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	449
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	478
TaiI	ACGT	3 cut(s)	201, 229, 304
TaqI	TCGA	1 cut(s)	180
TasI	AATT	1 cut(s)	207
TatI	WGTACW	1 cut(s)	318
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	3 cut(s)	125, 348, 502
Tru9I	TTAA	3 cut(s)	125, 348, 502
TscAI	CASTG	2 cut(s)	389, 481
TseFI	GTSAC	2 cut(s)	262, 472
Tsp45I	GTSAC	2 cut(s)	262, 472
TspDTI	ATGAA	1 cut(s)	191
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	2 cut(s)	389, 481
Vha464I	CTTAAG	1 cut(s)	124
XagI	CCTNNNNNAGG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.