Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0013244

Physical Location & Seq

Genomic Coordinates Forward (+)

7291475 .. 7292914

Gene Structure 1440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1042800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCGCAAACACTGGCAATGCCTCTGGCGCCCTCCCTCTCTGTAATCTGCAATGGAAGAAACCTTAATCCCCTCTCCAACACCCTCTCCTTCCCAATCAGACCCCCCAATCAGGTTGGCGGCTTGAGCATCAAATGCGTGCGTGTTGGCGGAGTTGAAATCCCCAACAACAAAAGGGTCGAGTACTCTCTTCAGTACGTTCATGGAATTGGGCGTACCAGGGCGCGAACAATCCTAATCGACCTCAACATGGAGAACAAAATCACCAAAGATTTGTCGGAAGAAGAACTCACCATTATCCGAGATGAAGTCTCCAAGTACATGATTGAAGGAGATTTGAGGAGGTTCAATGCCTTGAATATAAGGAGACTCAAGGAGATTCAGTGCTACAGAGGCATACGCCACAGTCAGGGATTGCCTTGCAGAGGACAGCGCACCAAGAACAACACTAGGACTCTGAAGGGTAAGAGGGTCACAGTTGCTGGAAAGAAAAAGGCCCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022613 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

168

Amino Acids

18.87

Weight (kDa)

10.55

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	48 - 152	1.4e-30	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14320 AT5G14320
fragaria_vesca	FvH4_2g26180
malus_domestica	MD05G1042800.v1.1
prunus_persica	Prupe.1G504800_v2.0.a1 Prupe.1G504800_v2.0.a1 Prupe.1G504800_v2.0.a1
pyrus_communis	pycom05g03540
rosa_chinensis	RchiOBHm_Chr6g0294611
rosa_laevigata	RLG00000011854
rosa_multiflora	Rmu_sc0006264.1_g000010
rosa_roxburghii	Rroxscaffold_7G00173160
rosa_rugosa	Rorug06G0246300
rosa_samantha	Rh6AG358700 Rh6BG365900 Rh6CG372500 Rh6DG359300
rosa_wichuraiana	Rw6G031300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	28
AccII	CGCG	1 cut(s)	226
AciI	CCGC	2 cut(s)	120, 150
AcuI	CTGAAG	2 cut(s)	176, 479
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	4 cut(s)	185, 197, 217, 320
AfiI	CCNNNNNNNGG	4 cut(s)	112, 250, 409, 425
AgsI	TTSAA	4 cut(s)	158, 329, 349, 358
AjnI	CCWGG	1 cut(s)	218
Alw26I	GTCTC	2 cut(s)	316, 361
AlwNI	CAGNNNCTG	1 cut(s)	482
AoxI	GGCC	1 cut(s)	495
AspLEI	GCGC	4 cut(s)	7, 31, 226, 435
AspS9I	GGNCC	1 cut(s)	496
AsuHPI	GGTGA	2 cut(s)	256, 283
BanI	GGYRCC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	220
BcoDI	GTCTC	2 cut(s)	316, 361
BfaI	CTAG	1 cut(s)	450
BfmI	CTRYAG	1 cut(s)	388
BfoI	RGCGCY	1 cut(s)	32
BisI	GCNGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	122
BmcAI	AGTACT	1 cut(s)	185
Bme1390I	CCNGG	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	496
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	220
BmsI	GCATC	1 cut(s)	138
BpuEI	CTTGAG	2 cut(s)	145, 356
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	219
BsaXI	ACNNNNNCTCC	4 cut(s)	71, 101, 368, 398
Bsc4I	CCNNNNNNNGG	4 cut(s)	112, 250, 409, 425
Bse1I	ACTGG	1 cut(s)	18
Bse3DI	GCAATG	2 cut(s)	24, 58
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	219
BseLI	CCNNNNNNNGG	4 cut(s)	112, 250, 409, 425
BseMI	GCAATG	2 cut(s)	24, 58
BseNI	ACTGG	1 cut(s)	18
BseRI	GAGGAG	1 cut(s)	355
Bsh1236I	CGCG	1 cut(s)	226
BshFI	GGCC	1 cut(s)	497
BshNI	GGYRCC	1 cut(s)	28
BslI	CCNNNNNNNGG	4 cut(s)	112, 250, 409, 425
BsmAI	GTCTC	2 cut(s)	316, 361
BsnI	GGCC	1 cut(s)	497
BspACI	CCGC	2 cut(s)	120, 150
BspANI	GGCC	1 cut(s)	497
BspFNI	CGCG	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	30
BspT107I	GGYRCC	1 cut(s)	28
BsrDI	GCAATG	2 cut(s)	24, 58
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	1 cut(s)	219
BssNI	GRCGYC	1 cut(s)	29
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	2 cut(s)	407, 478
Bst6I	CTCTTC	1 cut(s)	195
BstACI	GRCGYC	1 cut(s)	29
BstAPI	GCANNNNNTGC	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	140
BstENI	CCTNNNNNAGG	1 cut(s)	423
BstFNI	CGCG	1 cut(s)	226
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	4 cut(s)	7, 31, 226, 435
BstMAI	GTCTC	2 cut(s)	316, 361
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 126, 135, 393
BstNI	CCWGG	1 cut(s)	220
BstSCI	CCNGG	1 cut(s)	218
BstSFI	CTRYAG	1 cut(s)	388
BstUI	CGCG	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	497
BtsIMutI	CAGTG	2 cut(s)	11, 389
Cac8I	GCNNGC	1 cut(s)	140
CaiI	CAGNNNCTG	1 cut(s)	482
CfoI	GCGC	4 cut(s)	7, 31, 226, 435
Cfr13I	GGNCC	1 cut(s)	496
Csp6I	GTAC	4 cut(s)	184, 196, 216, 319
CviAII	CATG	3 cut(s)	203, 250, 322
CviJI	RGCY	2 cut(s)	123, 497
CviKI_1	RGCY	2 cut(s)	123, 497
CviQI	GTAC	4 cut(s)	184, 196, 216, 319
DinI	GGCGCC	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
EciI	GGCGGA	1 cut(s)	165
Eco57I	CTGAAG	2 cut(s)	176, 479
EcoNI	CCTNNNNNAGG	1 cut(s)	423
EcoRII	CCWGG	1 cut(s)	218
EgeI	GGCGCC	1 cut(s)	30
EheI	GGCGCC	1 cut(s)	30
FaeI	CATG	3 cut(s)	206, 253, 325
FaiI	YATR	5 cut(s)	204, 251, 323, 362, 398
FatI	CATG	3 cut(s)	202, 249, 321
Fnu4HI	GCNGC	1 cut(s)	121
Fsp4HI	GCNGC	1 cut(s)	121
FspBI	CTAG	1 cut(s)	450
GlaI	GCGC	4 cut(s)	6, 30, 225, 434
GluI	GCNGC	1 cut(s)	121
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	497
HhaI	GCGC	4 cut(s)	7, 31, 226, 435
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	3 cut(s)	206, 253, 325
Hin6I	GCGC	4 cut(s)	5, 29, 224, 433
HinP1I	GCGC	4 cut(s)	5, 29, 224, 433
HinfI	GANTC	3 cut(s)	369, 379, 454
HphI	GGTGA	2 cut(s)	256, 283
Hpy188I	TCNGA	4 cut(s)	101, 280, 302, 459
HpyAV	CCTTC	3 cut(s)	100, 323, 454
HpyCH4III	ACNGT	2 cut(s)	407, 478
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	2 cut(s)	51, 423
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 126, 135, 393
HpySE526I	ACGT	1 cut(s)	198
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	3 cut(s)	206, 253, 325
HspAI	GCGC	4 cut(s)	5, 29, 224, 433
KasI	GGCGCC	1 cut(s)	28
LpnPI	CCDG	6 cut(s)	11, 98, 205, 232, 395, 468
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	1 cut(s)	450
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	472
MboII	GAAGA	4 cut(s)	69, 182, 293, 296
MluCI	AATT	1 cut(s)	207
Mly113I	GGCGCC	1 cut(s)	29
MlyI	GAGTC	2 cut(s)	363, 448
MmeI	TCCRAC	2 cut(s)	102, 258
MseI	TTAA	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	220
MvaI	CCWGG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	226
MwoI	GCNNNNNNNGC	4 cut(s)	28, 126, 135, 393
NarI	GGCGCC	1 cut(s)	29
NlaIII	CATG	3 cut(s)	206, 253, 325
NlaIV	GGNNCC	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	472
PfeI	GAWTC	1 cut(s)	379
PkrI	GCNGC	1 cut(s)	122
PleI	GAGTC	2 cut(s)	363, 448
PluTI	GGCGCC	1 cut(s)	32
PpsI	GAGTC	2 cut(s)	363, 448
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	496
PstNI	CAGNNNCTG	1 cut(s)	482
RsaI	GTAC	4 cut(s)	185, 197, 217, 320
RsaNI	GTAC	4 cut(s)	184, 196, 216, 319
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	1 cut(s)	121
Sau96I	GGNCC	1 cut(s)	496
ScaI	AGTACT	1 cut(s)	185
SchI	GAGTC	2 cut(s)	363, 448
ScrFI	CCNGG	1 cut(s)	220
SetI	ASST	5 cut(s)	66, 117, 201, 246, 347
SfaNI	GCATC	1 cut(s)	138
SfcI	CTRYAG	1 cut(s)	388
SfoI	GGCGCC	1 cut(s)	30
SmlI	CTYRAG	2 cut(s)	124, 371
SmoI	CTYRAG	2 cut(s)	124, 371
Sse9I	AATT	1 cut(s)	207
SsiI	CCGC	2 cut(s)	120, 150
SspDI	GGCGCC	1 cut(s)	28
SspMI	CTAG	1 cut(s)	450
StyD4I	CCNGG	1 cut(s)	218
TaaI	ACNGT	2 cut(s)	407, 478
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	2 cut(s)	180, 240
TasI	AATT	1 cut(s)	207
TatI	WGTACW	2 cut(s)	183, 318
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TscAI	CASTG	2 cut(s)	18, 389
TseFI	GTSAC	1 cut(s)	472
Tsp45I	GTSAC	1 cut(s)	472
TspDTI	ATGAA	2 cut(s)	191, 321
TspRI	CASTG	2 cut(s)	18, 389
XagI	CCTNNNNNAGG	1 cut(s)	423
XspI	CTAG	1 cut(s)	450
ZrmI	AGTACT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.