TruB family pseudouridylate synthase (N terminal domain)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G14460 |
| fragaria_vesca | FvH4_6g51780 FvH4_6g51780 |
| malus_domestica | MD17G1022100.v1.1 |
| prunus_persica | Prupe.3G294000_v2.0.a1 |
| pyrus_communis | pycom17g01920 |
| rosa_chinensis | RchiOBHm_Chr2g0173311 |
| rosa_laevigata | RLG00000022178 |
| rosa_multiflora | Rmu_sc0010961.1_g000005 |
| rosa_roxburghii | Rroxscaffold_2G00079060 |
| rosa_rugosa | Rorug02G0567200 Rorug02G0567300 |
| rosa_samantha | Rh2AG647600 Rh2BG658100 Rh2CG623500 Rh2DG671900 |
| rosa_wichuraiana | Rw2G053160 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 549 |
| AccI | GTMKAC | 2 cut(s) | 282, 316 |
| AccIII | TCCGGA | 1 cut(s) | 334 |
| AciI | CCGC | 1 cut(s) | 1158 |
| AclWI | GGATC | 2 cut(s) | 326, 1064 |
| AcsI | RAATTY | 4 cut(s) | 266, 467, 1386, 1580 |
| AcuI | CTGAAG | 3 cut(s) | 24, 423, 477 |
| AdeI | CACNNNGTG | 1 cut(s) | 689 |
| AfaI | GTAC | 3 cut(s) | 964, 1340, 1468 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 326 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1031 |
| AjnI | CCWGG | 1 cut(s) | 616 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1372, 1404 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1054, 1086 |
| AluBI | AGCT | 4 cut(s) | 1021, 1262, 1372, 1505 |
| AluI | AGCT | 4 cut(s) | 1021, 1262, 1372, 1505 |
| Alw21I | GWGCWC | 2 cut(s) | 247, 1522 |
| Alw26I | GTCTC | 1 cut(s) | 376 |
| Alw44I | GTGCAC | 1 cut(s) | 243 |
| AlwI | GGATC | 2 cut(s) | 326, 1064 |
| Aor13HI | TCCGGA | 1 cut(s) | 334 |
| ApaLI | GTGCAC | 1 cut(s) | 243 |
| ApeKI | GCWGC | 2 cut(s) | 680, 1598 |
| ApoI | RAATTY | 4 cut(s) | 266, 467, 1386, 1580 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 199, 231 |
| AseI | ATTAAT | 1 cut(s) | 1091 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 909, 1387 |
| AspS9I | GGNCC | 1 cut(s) | 953 |
| AsuC2I | CCSGG | 2 cut(s) | 321, 1448 |
| AsuHPI | GGTGA | 7 cut(s) | 908, 941, 988, 1187, 1340, 1514, 1565 |
| AvaII | GGWCC | 1 cut(s) | 953 |
| BaeGI | GKGCMC | 1 cut(s) | 247 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1123, 1156 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 371, 403 |
| BbsI | GAAGAC | 1 cut(s) | 27 |
| Bbv12I | GWGCWC | 2 cut(s) | 247, 1522 |
| BbvI | GCAGC | 2 cut(s) | 692, 1610 |
| BccI | CCATC | 6 cut(s) | 239, 547, 893, 939, 944, 987 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 224, 258 |
| BciT130I | CCWGG | 1 cut(s) | 618 |
| BclI | TGATCA | 2 cut(s) | 171, 1143 |
| BcnI | CCSGG | 2 cut(s) | 321, 1448 |
| BcoDI | GTCTC | 1 cut(s) | 376 |
| BfaI | CTAG | 4 cut(s) | 885, 942, 1193, 1621 |
| BfmI | CTRYAG | 1 cut(s) | 364 |
| BglII | AGATCT | 2 cut(s) | 1478, 1492 |
| BisI | GCNGC | 2 cut(s) | 681, 1599 |
| BlsI | GCNGC | 2 cut(s) | 682, 1600 |
| Bme1390I | CCNGG | 3 cut(s) | 321, 618, 1448 |
| Bme18I | GGWCC | 1 cut(s) | 953 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1031 |
| BmgT120I | GGNCC | 1 cut(s) | 953 |
| BmrFI | CCNGG | 3 cut(s) | 321, 618, 1448 |
| BmsI | GCATC | 1 cut(s) | 1561 |
| BoxI | GACNNNNGTC | 1 cut(s) | 31 |
| BpiI | GAAGAC | 1 cut(s) | 27 |
| BpmI | CTGGAG | 2 cut(s) | 348, 639 |
| BpuMI | CCSGG | 2 cut(s) | 321, 1448 |
| BsaJI | CCNNGG | 4 cut(s) | 89, 527, 1074, 1135 |
| BsaWI | WCCGGW | 2 cut(s) | 239, 334 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 847, 877, 1350, 1380 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 326 |
| Bse1I | ACTGG | 4 cut(s) | 297, 589, 1087, 1399 |
| BseAI | TCCGGA | 1 cut(s) | 334 |
| BseBI | CCWGG | 1 cut(s) | 618 |
| BseDI | CCNNGG | 4 cut(s) | 89, 527, 1074, 1135 |
| BseGI | GGATG | 5 cut(s) | 99, 745, 808, 955, 998 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 326 |
| BseMII | CTCAG | 3 cut(s) | 93, 267, 813 |
| BseNI | ACTGG | 4 cut(s) | 297, 589, 1087, 1399 |
| BseRI | GAGGAG | 4 cut(s) | 54, 67, 797, 1371 |
| BseSI | GKGCMC | 1 cut(s) | 247 |
| BseXI | GCAGC | 2 cut(s) | 692, 1610 |
| BsgI | GTGCAG | 1 cut(s) | 1509 |
| BsiHKAI | GWGCWC | 2 cut(s) | 247, 1522 |
| BsiSI | CCGG | 6 cut(s) | 240, 263, 321, 335, 1447, 1537 |
| BslFI | GGGAC | 2 cut(s) | 168, 204 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 326 |
| BsmAI | GTCTC | 1 cut(s) | 376 |
| BsmFI | GGGAC | 2 cut(s) | 168, 204 |
| Bsp1286I | GDGCHC | 2 cut(s) | 247, 1522 |
| Bsp13I | TCCGGA | 1 cut(s) | 334 |
| Bsp143I | GATC | 6 cut(s) | 171, 331, 1069, 1143, 1478, 1492 |
| Bsp19I | CCATGG | 3 cut(s) | 89, 527, 1074 |
| BspACI | CCGC | 1 cut(s) | 1158 |
| BspCNI | CTCAG | 3 cut(s) | 92, 266, 814 |
| BspEI | TCCGGA | 1 cut(s) | 334 |
| BspPI | GGATC | 2 cut(s) | 326, 1064 |
| BsrI | ACTGG | 4 cut(s) | 297, 589, 1087, 1399 |
| BssECI | CCNNGG | 4 cut(s) | 89, 527, 1074, 1135 |
| BssMI | GATC | 6 cut(s) | 171, 331, 1069, 1143, 1478, 1492 |
| BssT1I | CCWWGG | 4 cut(s) | 89, 527, 1074, 1135 |
| Bst2UI | CCWGG | 1 cut(s) | 618 |
| Bst4CI | ACNGT | 9 cut(s) | 212, 368, 416, 840, 929, 962, 967, 1009, 1366 |
| Bst6I | CTCTTC | 7 cut(s) | 74, 131, 374, 486, 629, 689, 1348 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1496 |
| BstDEI | CTNAG | 5 cut(s) | 79, 253, 822, 1116, 1461 |
| BstDSI | CCRYGG | 3 cut(s) | 89, 527, 1074 |
| BstF5I | GGATG | 5 cut(s) | 99, 745, 808, 955, 998 |
| BstKTI | GATC | 6 cut(s) | 174, 334, 1072, 1146, 1481, 1495 |
| BstMAI | GTCTC | 1 cut(s) | 376 |
| BstMBI | GATC | 6 cut(s) | 171, 331, 1069, 1143, 1478, 1492 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1496, 1571 |
| BstNI | CCWGG | 1 cut(s) | 618 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 31 |
| BstSCI | CCNGG | 3 cut(s) | 319, 616, 1446 |
| BstSFI | CTRYAG | 1 cut(s) | 364 |
| BstSLI | GKGCMC | 1 cut(s) | 247 |
| BstV1I | GCAGC | 2 cut(s) | 692, 1610 |
| BstV2I | GAAGAC | 1 cut(s) | 27 |
| BstX2I | RGATCY | 3 cut(s) | 331, 1478, 1492 |
| BstYI | RGATCY | 3 cut(s) | 331, 1478, 1492 |
| BtgI | CCRYGG | 3 cut(s) | 89, 527, 1074 |
| BtsCI | GGATG | 5 cut(s) | 99, 745, 808, 955, 998 |
| BtsI | GCAGTG | 1 cut(s) | 1527 |
| BtsIMutI | CAGTG | 4 cut(s) | 596, 972, 1005, 1527 |
| Cfr13I | GGNCC | 1 cut(s) | 953 |
| CseI | GACGC | 2 cut(s) | 1090, 1205 |
| Csp6I | GTAC | 3 cut(s) | 963, 1339, 1467 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1102, 1137 |
| CviAII | CATG | 6 cut(s) | 90, 169, 276, 528, 1055, 1075 |
| CviQI | GTAC | 3 cut(s) | 963, 1339, 1467 |
| DdeI | CTNAG | 5 cut(s) | 79, 253, 822, 1116, 1461 |
| DpnI | GATC | 6 cut(s) | 173, 333, 1071, 1145, 1480, 1494 |
| DpnII | GATC | 6 cut(s) | 171, 331, 1069, 1143, 1478, 1492 |
| DraIII | CACNNNGTG | 1 cut(s) | 689 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1031 |
| Eam1104I | CTCTTC | 7 cut(s) | 74, 131, 374, 486, 629, 689, 1348 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1031 |
| EarI | CTCTTC | 7 cut(s) | 74, 131, 374, 486, 629, 689, 1348 |
| Eco130I | CCWWGG | 4 cut(s) | 89, 527, 1074, 1135 |
| Eco47I | GGWCC | 1 cut(s) | 953 |
| Eco57I | CTGAAG | 3 cut(s) | 24, 423, 477 |
| EcoRI | GAATTC | 2 cut(s) | 266, 1580 |
| EcoRII | CCWGG | 1 cut(s) | 616 |
| EcoT14I | CCWWGG | 4 cut(s) | 89, 527, 1074, 1135 |
| ErhI | CCWWGG | 4 cut(s) | 89, 527, 1074, 1135 |
| FaeI | CATG | 6 cut(s) | 93, 172, 279, 531, 1058, 1078 |
| FaqI | GGGAC | 2 cut(s) | 168, 204 |
| FatI | CATG | 6 cut(s) | 89, 168, 275, 527, 1054, 1074 |
| FbaI | TGATCA | 2 cut(s) | 171, 1143 |
| FblI | GTMKAC | 2 cut(s) | 282, 316 |
| Fnu4HI | GCNGC | 2 cut(s) | 681, 1599 |
| FokI | GGATG | 5 cut(s) | 86, 752, 815, 962, 1005 |
| Fsp4HI | GCNGC | 2 cut(s) | 681, 1599 |
| FspBI | CTAG | 4 cut(s) | 885, 942, 1193, 1621 |
| GluI | GCNGC | 2 cut(s) | 681, 1599 |
| GsuI | CTGGAG | 2 cut(s) | 348, 639 |
| HapII | CCGG | 6 cut(s) | 240, 263, 321, 335, 1447, 1537 |
| HgaI | GACGC | 2 cut(s) | 1090, 1205 |
| Hin1II | CATG | 6 cut(s) | 93, 172, 279, 531, 1058, 1078 |
| HincII | GTYRAC | 3 cut(s) | 283, 317, 1126 |
| HindII | GTYRAC | 3 cut(s) | 283, 317, 1126 |
| HindIII | AAGCTT | 1 cut(s) | 1260 |
| HpaII | CCGG | 6 cut(s) | 240, 263, 321, 335, 1447, 1537 |
| HphI | GGTGA | 7 cut(s) | 908, 941, 988, 1187, 1340, 1514, 1565 |
| Hpy166II | GTNNAC | 7 cut(s) | 245, 283, 308, 317, 932, 979, 1126 |
| Hpy188I | TCNGA | 6 cut(s) | 397, 403, 430, 486, 799, 1440 |
| Hpy188III | TCNNGA | 4 cut(s) | 327, 335, 584, 1193 |
| Hpy8I | GTNNAC | 7 cut(s) | 245, 283, 308, 317, 932, 979, 1126 |
| Hpy99I | CGWCG | 4 cut(s) | 216, 219, 1029, 1106 |
| HpyAV | CCTTC | 5 cut(s) | 369, 428, 766, 772, 1339 |
| HpyCH4III | ACNGT | 9 cut(s) | 212, 368, 416, 840, 929, 962, 967, 1009, 1366 |
| HpyCH4V | TGCA | 3 cut(s) | 245, 613, 1490 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1496, 1571 |
| HpyF3I | CTNAG | 5 cut(s) | 79, 253, 822, 1116, 1461 |
| Hsp92II | CATG | 6 cut(s) | 93, 172, 279, 531, 1058, 1078 |
| Kpn2I | TCCGGA | 1 cut(s) | 334 |
| Ksp22I | TGATCA | 2 cut(s) | 171, 1143 |
| Kzo9I | GATC | 6 cut(s) | 171, 331, 1069, 1143, 1478, 1492 |
| LmnI | GCTCC | 2 cut(s) | 301, 1231 |
| Lsp1109I | GCAGC | 2 cut(s) | 692, 1610 |
| LweI | GCATC | 1 cut(s) | 1561 |
| MaeI | CTAG | 4 cut(s) | 885, 942, 1193, 1621 |
| MaeIII | GTNAC | 3 cut(s) | 477, 817, 916 |
| MalI | GATC | 6 cut(s) | 173, 333, 1071, 1145, 1480, 1494 |
| MboI | GATC | 6 cut(s) | 171, 331, 1069, 1143, 1478, 1492 |
| MfeI | CAATTG | 1 cut(s) | 1548 |
| MflI | RGATCY | 3 cut(s) | 331, 1478, 1492 |
| MhlI | GDGCHC | 2 cut(s) | 247, 1522 |
| MlyI | GAGTC | 3 cut(s) | 245, 1196, 1232 |
| MmeI | TCCRAC | 1 cut(s) | 1303 |
| MroI | TCCGGA | 1 cut(s) | 334 |
| MroXI | GAANNNNTTC | 2 cut(s) | 909, 1387 |
| MseI | TTAA | 5 cut(s) | 708, 846, 854, 1091, 1254 |
| MspI | CCGG | 6 cut(s) | 240, 263, 321, 335, 1447, 1537 |
| MspR9I | CCNGG | 3 cut(s) | 321, 618, 1448 |
| MunI | CAATTG | 1 cut(s) | 1548 |
| MvaI | CCWGG | 1 cut(s) | 618 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1496, 1571 |
| NciI | CCSGG | 2 cut(s) | 321, 1448 |
| NcoI | CCATGG | 3 cut(s) | 89, 527, 1074 |
| NdeII | GATC | 6 cut(s) | 171, 331, 1069, 1143, 1478, 1492 |
| NlaIII | CATG | 6 cut(s) | 93, 172, 279, 531, 1058, 1078 |
| PdmI | GAANNNNTTC | 2 cut(s) | 909, 1387 |
| PfeI | GAWTC | 7 cut(s) | 236, 272, 398, 438, 644, 1213, 1544 |
| PkrI | GCNGC | 2 cut(s) | 682, 1600 |
| PleI | GAGTC | 3 cut(s) | 245, 1196, 1231 |
| PpsI | GAGTC | 3 cut(s) | 245, 1196, 1231 |
| PshAI | GACNNNNGTC | 1 cut(s) | 31 |
| PshBI | ATTAAT | 1 cut(s) | 1091 |
| PsiI | TTATAA | 1 cut(s) | 549 |
| Psp6I | CCWGG | 1 cut(s) | 616 |
| PspGI | CCWGG | 1 cut(s) | 616 |
| PspPI | GGNCC | 1 cut(s) | 953 |
| PsuI | RGATCY | 3 cut(s) | 331, 1478, 1492 |
| RsaI | GTAC | 3 cut(s) | 964, 1340, 1468 |
| RsaNI | GTAC | 3 cut(s) | 963, 1339, 1467 |
| SalI | GTCGAC | 2 cut(s) | 281, 315 |
| SaqAI | TTAA | 5 cut(s) | 708, 846, 854, 1091, 1254 |
| SatI | GCNGC | 2 cut(s) | 681, 1599 |
| Sau3AI | GATC | 6 cut(s) | 171, 331, 1069, 1143, 1478, 1492 |
| Sau96I | GGNCC | 1 cut(s) | 953 |
| SchI | GAGTC | 3 cut(s) | 245, 1196, 1232 |
| ScrFI | CCNGG | 3 cut(s) | 321, 618, 1448 |
| SduI | GDGCHC | 2 cut(s) | 247, 1522 |
| SfaNI | GCATC | 1 cut(s) | 1561 |
| SfcI | CTRYAG | 1 cut(s) | 364 |
| SinI | GGWCC | 1 cut(s) | 953 |
| SsiI | CCGC | 1 cut(s) | 1158 |
| SspI | AATATT | 1 cut(s) | 1559 |
| SspMI | CTAG | 4 cut(s) | 885, 942, 1193, 1621 |
| StyD4I | CCNGG | 3 cut(s) | 319, 616, 1446 |
| StyI | CCWWGG | 4 cut(s) | 89, 527, 1074, 1135 |
| TaaI | ACNGT | 9 cut(s) | 212, 368, 416, 840, 929, 962, 967, 1009, 1366 |
| TaqI | TCGA | 5 cut(s) | 148, 234, 270, 282, 316 |
| TfiI | GAWTC | 7 cut(s) | 236, 272, 398, 438, 644, 1213, 1544 |
| Tru1I | TTAA | 5 cut(s) | 708, 846, 854, 1091, 1254 |
| Tru9I | TTAA | 5 cut(s) | 708, 846, 854, 1091, 1254 |
| TscAI | CASTG | 4 cut(s) | 596, 972, 1012, 1534 |
| TseI | GCWGC | 2 cut(s) | 680, 1598 |
| TspDTI | ATGAA | 3 cut(s) | 264, 447, 780 |
| TspRI | CASTG | 4 cut(s) | 596, 972, 1012, 1534 |
| VneI | GTGCAC | 1 cut(s) | 243 |
| VpaK11BI | GGWCC | 1 cut(s) | 953 |
| VspI | ATTAAT | 1 cut(s) | 1091 |
| XapI | RAATTY | 4 cut(s) | 266, 467, 1386, 1580 |
| XbaI | TCTAGA | 1 cut(s) | 1192 |
| XmiI | GTMKAC | 2 cut(s) | 282, 316 |
| XmnI | GAANNNNTTC | 2 cut(s) | 909, 1387 |
| XspI | CTAG | 4 cut(s) | 885, 942, 1193, 1621 |