Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014138

Physical Location & Seq

Genomic Coordinates Forward (+)

69176763 .. 69177795

Gene Structure 1033 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0567300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCTCGGCATTCAGGAGCTCTAGTAGTGTTGGTGATGATGGTCAGCTGGAGCAATTGCATGATGAACGACAAAAGCATTGCTTCTACCACTGCTGGTAATAGTACTGCGGTCGCCTCTTCAGCCTGGTGTAACGGGCACATAATCGACGGCCAGTGCATGCTTGGTGCAGACCCGGCCTACAGTGGCGGTGAGCACTTAGAATTGAACCTGGACGTGATGGACATGGTGGTGGTGGAGTACTATGATTCAGGTGAAAGCAGCAGAAGGGTCTTGGCCGGGGTGACTGGAATTGGTATAGTATTTGATTCTCTAAAGCCTACAAAGCCTGTGATTGATGCAAAAAACAAGAAATATATCAAGAACAGATGTGGCACATACACTCGCACTTGTTCTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TruB_C_2 TruB_N

Protein Analysis

133

Amino Acids

14.2

Weight (kDa)

6.8

Isoelectric Point (pI)

28.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14460
fragaria_vesca	FvH4_6g51780 FvH4_6g51780
malus_domestica	MD17G1022100.v1.1
prunus_persica	Prupe.3G294000_v2.0.a1
pyrus_communis	pycom17g01920
rosa_chinensis	RchiOBHm_Chr2g0173311
rosa_laevigata	RLG00000022178
rosa_multiflora	Rmu_sc0010961.1_g000005
rosa_roxburghii	Rroxscaffold_2G00079060
rosa_rugosa	Rorug02G0567200 Rorug02G0567300
rosa_samantha	Rh2AG647600 Rh2BG658100 Rh2CG623500 Rh2DG671900
rosa_wichuraiana	Rw2G053160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	110, 189
AcoI	YGGCCR	2 cut(s)	151, 276
AcuI	CTGAAG	1 cut(s)	105
AfaI	GTAC	2 cut(s)	106, 242
AgsI	TTSAA	1 cut(s)	208
AjiI	CACGTC	1 cut(s)	217
AjnI	CCWGG	2 cut(s)	125, 210
AluBI	AGCT	2 cut(s)	20, 48
AluI	AGCT	2 cut(s)	20, 48
Alw21I	GWGCWC	2 cut(s)	22, 198
AoxI	GGCC	3 cut(s)	151, 177, 276
ApeKI	GCWGC	1 cut(s)	261
AsuC2I	CCSGG	2 cut(s)	176, 280
AsuHPI	GGTGA	4 cut(s)	46, 203, 266, 295
BaeGI	GKGCMC	1 cut(s)	141
BanII	GRGCYC	1 cut(s)	22
Bbv12I	GWGCWC	2 cut(s)	22, 198
BbvI	GCAGC	1 cut(s)	273
BccI	CCATC	2 cut(s)	34, 214
BceAI	ACGGC	1 cut(s)	166
BciT130I	CCWGG	2 cut(s)	127, 212
BcnI	CCSGG	2 cut(s)	176, 280
BfaI	CTAG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	181
BisI	GCNGC	1 cut(s)	262
BlsI	GCNGC	1 cut(s)	263
BmcAI	AGTACT	2 cut(s)	106, 242
Bme1390I	CCNGG	4 cut(s)	127, 176, 212, 280
BmgBI	CACGTC	1 cut(s)	217
BmrFI	CCNGG	4 cut(s)	127, 176, 212, 280
BmsI	GCATC	1 cut(s)	328
BpmI	CTGGAG	1 cut(s)	70
BpuMI	CCSGG	2 cut(s)	176, 280
BsaJI	CCNNGG	1 cut(s)	279
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bse1I	ACTGG	2 cut(s)	154, 292
Bse3DI	GCAATG	1 cut(s)	78
BseBI	CCWGG	2 cut(s)	127, 212
BseDI	CCNNGG	1 cut(s)	279
BseMI	GCAATG	1 cut(s)	78
BseNI	ACTGG	2 cut(s)	154, 292
BseSI	GKGCMC	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	273
BsgI	GTGCAG	1 cut(s)	189
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	3 cut(s)	153, 179, 278
BsiEI	CGRYCG	1 cut(s)	114
BsiHKAI	GWGCWC	2 cut(s)	22, 198
BsiSI	CCGG	2 cut(s)	176, 279
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	3 cut(s)	153, 179, 278
Bsp1286I	GDGCHC	3 cut(s)	22, 141, 198
BspACI	CCGC	2 cut(s)	110, 189
BspANI	GGCC	3 cut(s)	153, 179, 278
BsrDI	GCAATG	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	154, 292
BssECI	CCNNGG	1 cut(s)	279
Bst2UI	CCWGG	2 cut(s)	127, 212
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	1 cut(s)	199
BstMCI	CGRYCG	1 cut(s)	114
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 176, 325
BstNI	CCWGG	2 cut(s)	127, 212
BstNSI	RCATGY	1 cut(s)	163
BstSCI	CCNGG	4 cut(s)	125, 174, 210, 278
BstSFI	CTRYAG	1 cut(s)	181
BstSLI	GKGCMC	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	273
BsuRI	GGCC	3 cut(s)	153, 179, 278
BtrI	CACGTC	1 cut(s)	217
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	3 cut(s)	90, 161, 190
Cac8I	GCNNGC	1 cut(s)	161
Csp6I	GTAC	2 cut(s)	105, 241
CviAII	CATG	3 cut(s)	61, 160, 226
CviJI	RGCY	9 cut(s)	5, 20, 48, 125, 153, 179, 278, 319, 328
CviKI_1	RGCY	9 cut(s)	5, 20, 48, 125, 153, 179, 278, 319, 328
CviQI	GTAC	2 cut(s)	105, 241
DdeI	CTNAG	1 cut(s)	199
EaeI	YGGCCR	2 cut(s)	151, 276
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Ecl136II	GAGCTC	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	22
Eco53kI	GAGCTC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	105
EcoICRI	GAGCTC	1 cut(s)	20
EcoRII	CCWGG	2 cut(s)	125, 210
EcoT38I	GRGCYC	1 cut(s)	22
FaeI	CATG	3 cut(s)	64, 163, 229
FaiI	YATR	8 cut(s)	62, 143, 161, 227, 246, 299, 357, 379
FalI	AAGNNNNNCTT	2 cut(s)	67, 99
FatI	CATG	3 cut(s)	60, 159, 225
Fnu4HI	GCNGC	1 cut(s)	262
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	1 cut(s)	262
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	1 cut(s)	262
GsuI	CTGGAG	1 cut(s)	70
HaeIII	GGCC	3 cut(s)	153, 179, 278
HapII	CCGG	2 cut(s)	176, 279
Hin1II	CATG	3 cut(s)	64, 163, 229
HinfI	GANTC	2 cut(s)	248, 308
HpaII	CCGG	2 cut(s)	176, 279
HphI	GGTGA	4 cut(s)	46, 203, 266, 295
Hpy188III	TCNNGA	3 cut(s)	15, 361, 396
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	261
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	4 cut(s)	60, 159, 170, 341
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 176, 325
HpyF3I	CTNAG	1 cut(s)	199
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	3 cut(s)	64, 163, 229
LmnI	GCTCC	2 cut(s)	17, 51
Lsp1109I	GCAGC	1 cut(s)	273
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	2 cut(s)	131, 283
MboII	GAAGA	1 cut(s)	111
MfeI	CAATTG	1 cut(s)	55
MhlI	GDGCHC	3 cut(s)	22, 141, 198
MluCI	AATT	3 cut(s)	55, 203, 291
MnlI	CCTC	1 cut(s)	127
MslI	CAYNNNNRTG	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	48
MspI	CCGG	2 cut(s)	176, 279
MspR9I	CCNGG	4 cut(s)	127, 176, 212, 280
MunI	CAATTG	1 cut(s)	55
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	2 cut(s)	127, 212
MwoI	GCNNNNNNNGC	3 cut(s)	122, 176, 325
NciI	CCSGG	2 cut(s)	176, 280
NlaIII	CATG	3 cut(s)	64, 163, 229
NmuCI	GTSAC	1 cut(s)	283
NspI	RCATGY	1 cut(s)	163
PaeI	GCATGC	1 cut(s)	163
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	248, 308
PkrI	GCNGC	1 cut(s)	263
Psp124BI	GAGCTC	1 cut(s)	22
Psp6I	CCWGG	2 cut(s)	125, 210
PspGI	CCWGG	2 cut(s)	125, 210
PvuII	CAGCTG	1 cut(s)	48
RsaI	GTAC	2 cut(s)	106, 242
RsaNI	GTAC	2 cut(s)	105, 241
RseI	CAYNNNNRTG	1 cut(s)	230
SacI	GAGCTC	1 cut(s)	22
SatI	GCNGC	1 cut(s)	262
ScaI	AGTACT	2 cut(s)	106, 242
ScrFI	CCNGG	4 cut(s)	127, 176, 212, 280
SduI	GDGCHC	3 cut(s)	22, 141, 198
SetI	ASST	5 cut(s)	22, 50, 213, 219, 256
SfaNI	GCATC	1 cut(s)	328
SfcI	CTRYAG	1 cut(s)	181
SmiMI	CAYNNNNRTG	1 cut(s)	230
SphI	GCATGC	1 cut(s)	163
Sse9I	AATT	3 cut(s)	55, 203, 291
SsiI	CCGC	2 cut(s)	110, 189
SspMI	CTAG	1 cut(s)	23
SstI	GAGCTC	1 cut(s)	22
StyD4I	CCNGG	4 cut(s)	125, 174, 210, 278
TaaI	ACNGT	1 cut(s)	185
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	1 cut(s)	147
TasI	AATT	3 cut(s)	55, 203, 291
TatI	WGTACW	2 cut(s)	104, 240
TfiI	GAWTC	2 cut(s)	248, 308
TscAI	CASTG	3 cut(s)	97, 161, 190
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	1 cut(s)	261
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	1 cut(s)	80
TspRI	CASTG	3 cut(s)	97, 161, 190
XceI	RCATGY	1 cut(s)	163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161
XspI	CTAG	1 cut(s)	23
ZrmI	AGTACT	2 cut(s)	106, 242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.