TruB family pseudouridylate synthase (N terminal domain)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G14460 |
| fragaria_vesca | FvH4_6g51780 FvH4_6g51780 |
| malus_domestica | MD17G1022100.v1.1 |
| prunus_persica | Prupe.3G294000_v2.0.a1 |
| pyrus_communis | pycom17g01920 |
| rosa_chinensis | RchiOBHm_Chr2g0173311 |
| rosa_laevigata | RLG00000022178 |
| rosa_multiflora | Rmu_sc0010961.1_g000005 |
| rosa_roxburghii | Rroxscaffold_2G00079060 |
| rosa_rugosa | Rorug02G0567200 Rorug02G0567300 |
| rosa_samantha | Rh2AG647600 Rh2BG658100 Rh2CG623500 Rh2DG671900 |
| rosa_wichuraiana | Rw2G053160 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 170 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 981 |
| AccI | GTMKAC | 1 cut(s) | 1113 |
| AciI | CCGC | 7 cut(s) | 178, 211, 219, 285, 341, 424, 1551 |
| AclWI | GGATC | 1 cut(s) | 1052 |
| AcoI | YGGCCR | 1 cut(s) | 107 |
| AcsI | RAATTY | 2 cut(s) | 1423, 1544 |
| AcuI | CTGAAG | 1 cut(s) | 140 |
| AfaI | GTAC | 7 cut(s) | 93, 161, 368, 395, 566, 584, 1284 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 981, 1162, 1266 |
| AflIII | ACRYGT | 2 cut(s) | 480, 519 |
| AgeI | ACCGGT | 1 cut(s) | 1195 |
| AgsI | TTSAA | 9 cut(s) | 132, 457, 478, 620, 853, 1176, 1205, 1536, 1573 |
| AjnI | CCWGG | 2 cut(s) | 622, 1214 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 1589 |
| AleI | CACNNNNGTG | 1 cut(s) | 1106 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1042, 1074 |
| AluBI | AGCT | 9 cut(s) | 331, 505, 571, 922, 1009, 1360, 1407, 1503, 1579 |
| AluI | AGCT | 9 cut(s) | 331, 505, 571, 922, 1009, 1360, 1407, 1503, 1579 |
| Alw21I | GWGCWC | 2 cut(s) | 507, 1362 |
| Alw26I | GTCTC | 3 cut(s) | 19, 298, 605 |
| AlwI | GGATC | 1 cut(s) | 1052 |
| AoxI | GGCC | 1 cut(s) | 107 |
| ApeKI | GCWGC | 2 cut(s) | 1253, 1404 |
| ApoI | RAATTY | 2 cut(s) | 1423, 1544 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 943, 975 |
| AseI | ATTAAT | 1 cut(s) | 1079 |
| AsiGI | ACCGGT | 1 cut(s) | 1195 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 403, 1531 |
| AspLEI | GCGC | 1 cut(s) | 1404 |
| AspS9I | GGNCC | 1 cut(s) | 941 |
| AsuC2I | CCSGG | 2 cut(s) | 254, 1436 |
| AsuHPI | GGTGA | 7 cut(s) | 662, 688, 805, 976, 1185, 1328, 1356 |
| AsuII | TTCGAA | 1 cut(s) | 1525 |
| AvaII | GGWCC | 1 cut(s) | 941 |
| BaeGI | GKGCMC | 1 cut(s) | 1510 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1111, 1144 |
| BanII | GRGCYC | 3 cut(s) | 507, 1215, 1362 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 350, 377, 382, 409 |
| BbsI | GAAGAC | 3 cut(s) | 420, 840, 1242 |
| Bbv12I | GWGCWC | 2 cut(s) | 507, 1362 |
| BbvCI | CCTCAGC | 1 cut(s) | 876 |
| BbvI | GCAGC | 2 cut(s) | 1240, 1416 |
| BccI | CCATC | 7 cut(s) | 340, 553, 692, 698, 932, 975, 1310 |
| BceAI | ACGGC | 2 cut(s) | 74, 94 |
| BciT130I | CCWGG | 2 cut(s) | 624, 1216 |
| BciVI | GTATCC | 2 cut(s) | 540, 1112 |
| BclI | TGATCA | 2 cut(s) | 592, 1131 |
| BcnI | CCSGG | 2 cut(s) | 254, 1436 |
| BcoDI | GTCTC | 3 cut(s) | 19, 298, 605 |
| BfaI | CTAG | 2 cut(s) | 1019, 1368 |
| BfuI | GTATCC | 2 cut(s) | 540, 1112 |
| BglII | AGATCT | 1 cut(s) | 1272 |
| BisI | GCNGC | 3 cut(s) | 211, 1254, 1405 |
| BlsI | GCNGC | 3 cut(s) | 212, 1255, 1406 |
| BmcAI | AGTACT | 2 cut(s) | 368, 584 |
| Bme1390I | CCNGG | 4 cut(s) | 254, 624, 1216, 1436 |
| Bme18I | GGWCC | 1 cut(s) | 941 |
| BmgT120I | GGNCC | 1 cut(s) | 941 |
| BmiI | GGNNCC | 3 cut(s) | 400, 894, 943 |
| BmrFI | CCNGG | 4 cut(s) | 254, 624, 1216, 1436 |
| BmsI | GCATC | 3 cut(s) | 862, 1174, 1265 |
| BpiI | GAAGAC | 3 cut(s) | 420, 840, 1242 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 78, 110 |
| BpmI | CTGGAG | 1 cut(s) | 593 |
| Bpu10I | CCTNAGC | 1 cut(s) | 876 |
| Bpu14I | TTCGAA | 1 cut(s) | 1525 |
| BpuMI | CCSGG | 2 cut(s) | 254, 1436 |
| BsaAI | YACGTR | 1 cut(s) | 528 |
| BsaJI | CCNNGG | 6 cut(s) | 104, 252, 533, 1123, 1214, 1215 |
| BsaWI | WCCGGW | 2 cut(s) | 274, 1195 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 127, 157, 566, 596 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 981, 1162, 1266 |
| Bse118I | RCCGGY | 1 cut(s) | 1195 |
| Bse1I | ACTGG | 5 cut(s) | 11, 320, 633, 1075, 1387 |
| Bse3DI | GCAATG | 1 cut(s) | 805 |
| BseBI | CCWGG | 2 cut(s) | 624, 1216 |
| BseDI | CCNNGG | 6 cut(s) | 104, 252, 533, 1123, 1214, 1215 |
| BseGI | GGATG | 7 cut(s) | 396, 703, 709, 943, 986, 1189, 1256 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 981, 1162, 1266 |
| BseMI | GCAATG | 1 cut(s) | 805 |
| BseMII | CTCAG | 7 cut(s) | 97, 200, 241, 255, 309, 867, 909 |
| BseNI | ACTGG | 5 cut(s) | 11, 320, 633, 1075, 1387 |
| BseRI | GAGGAG | 5 cut(s) | 394, 452, 512, 515, 1359 |
| BseSI | GKGCMC | 1 cut(s) | 1510 |
| BseXI | GCAGC | 2 cut(s) | 1240, 1416 |
| BsgI | GTGCAG | 1 cut(s) | 1497 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1469 |
| BshFI | GGCC | 1 cut(s) | 109 |
| BshTI | ACCGGT | 1 cut(s) | 1195 |
| BsiEI | CGRYCG | 1 cut(s) | 1469 |
| BsiHKAI | GWGCWC | 2 cut(s) | 507, 1362 |
| BsiSI | CCGG | 5 cut(s) | 254, 275, 461, 1196, 1435 |
| BslFI | GGGAC | 7 cut(s) | 7, 621, 845, 927, 964, 1468, 1580 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 981, 1162, 1266 |
| BsmAI | GTCTC | 3 cut(s) | 19, 298, 605 |
| BsmBI | CGTCTC | 1 cut(s) | 298 |
| BsmFI | GGGAC | 7 cut(s) | 7, 621, 845, 927, 964, 1468, 1580 |
| BsnI | GGCC | 1 cut(s) | 109 |
| Bsp119I | TTCGAA | 1 cut(s) | 1525 |
| Bsp1286I | GDGCHC | 4 cut(s) | 507, 1215, 1362, 1510 |
| Bsp143I | GATC | 5 cut(s) | 168, 592, 1057, 1131, 1272 |
| Bsp19I | CCATGG | 2 cut(s) | 104, 533 |
| BspACI | CCGC | 7 cut(s) | 178, 211, 219, 285, 341, 424, 1551 |
| BspANI | GGCC | 1 cut(s) | 109 |
| BspCNI | CTCAG | 7 cut(s) | 96, 199, 240, 254, 308, 868, 910 |
| BspLI | GGNNCC | 3 cut(s) | 400, 894, 943 |
| BspPI | GGATC | 1 cut(s) | 1052 |
| BspQI | GCTCTTC | 1 cut(s) | 1527 |
| BspT104I | TTCGAA | 1 cut(s) | 1525 |
| BsrDI | GCAATG | 1 cut(s) | 805 |
| BsrFI | RCCGGY | 1 cut(s) | 1195 |
| BsrI | ACTGG | 5 cut(s) | 11, 320, 633, 1075, 1387 |
| BssAI | RCCGGY | 1 cut(s) | 1195 |
| BssECI | CCNNGG | 6 cut(s) | 104, 252, 533, 1123, 1214, 1215 |
| BssMI | GATC | 5 cut(s) | 168, 592, 1057, 1131, 1272 |
| BssT1I | CCWWGG | 3 cut(s) | 104, 533, 1123 |
| Bst2UI | CCWGG | 2 cut(s) | 624, 1216 |
| Bst4CI | ACNGT | 3 cut(s) | 955, 997, 1145 |
| Bst6I | CTCTTC | 8 cut(s) | 35, 353, 380, 756, 1336, 1522, 1527, 1578 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1559 |
| BstBAI | YACGTR | 1 cut(s) | 528 |
| BstBI | TTCGAA | 1 cut(s) | 1525 |
| BstC8I | GCNNGC | 2 cut(s) | 333, 1044 |
| BstDEI | CTNAG | 9 cut(s) | 83, 186, 227, 241, 295, 876, 918, 1104, 1408 |
| BstDSI | CCRYGG | 2 cut(s) | 104, 533 |
| BstF5I | GGATG | 7 cut(s) | 396, 703, 709, 943, 986, 1189, 1256 |
| BstHHI | GCGC | 1 cut(s) | 1404 |
| BstKTI | GATC | 5 cut(s) | 171, 595, 1060, 1134, 1275 |
| BstMAI | GTCTC | 3 cut(s) | 19, 298, 605 |
| BstMBI | GATC | 5 cut(s) | 168, 592, 1057, 1131, 1272 |
| BstMCI | CGRYCG | 1 cut(s) | 1469 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1219, 1559 |
| BstNI | CCWGG | 2 cut(s) | 624, 1216 |
| BstNSI | RCATGY | 1 cut(s) | 1046 |
| BstSCI | CCNGG | 4 cut(s) | 252, 622, 1214, 1434 |
| BstSLI | GKGCMC | 1 cut(s) | 1510 |
| BstSNI | TACGTA | 1 cut(s) | 528 |
| BstV1I | GCAGC | 2 cut(s) | 1240, 1416 |
| BstV2I | GAAGAC | 3 cut(s) | 420, 840, 1242 |
| BstX2I | RGATCY | 1 cut(s) | 1272 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1108 |
| BstYI | RGATCY | 1 cut(s) | 1272 |
| BsuI | GTATCC | 2 cut(s) | 540, 1112 |
| BsuRI | GGCC | 1 cut(s) | 109 |
| BtgI | CCRYGG | 2 cut(s) | 104, 533 |
| BtsCI | GGATG | 7 cut(s) | 396, 703, 709, 943, 986, 1189, 1256 |
| BtsIMutI | CAGTG | 2 cut(s) | 602, 1150 |
| Cac8I | GCNNGC | 2 cut(s) | 333, 1044 |
| CfoI | GCGC | 1 cut(s) | 1404 |
| Cfr10I | RCCGGY | 1 cut(s) | 1195 |
| Cfr13I | GGNCC | 1 cut(s) | 941 |
| CsiI | ACCWGGT | 1 cut(s) | 622 |
| Csp6I | GTAC | 7 cut(s) | 92, 160, 367, 394, 565, 583, 1283 |
| CspAI | ACCGGT | 1 cut(s) | 1195 |
| CviAII | CATG | 4 cut(s) | 105, 534, 1043, 1563 |
| CviQI | GTAC | 7 cut(s) | 92, 160, 367, 394, 565, 583, 1283 |
| DdeI | CTNAG | 9 cut(s) | 83, 186, 227, 241, 295, 876, 918, 1104, 1408 |
| DpnI | GATC | 5 cut(s) | 170, 594, 1059, 1133, 1274 |
| DpnII | GATC | 5 cut(s) | 168, 592, 1057, 1131, 1272 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 170 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 170 |
| EaeI | YGGCCR | 1 cut(s) | 107 |
| Eam1104I | CTCTTC | 8 cut(s) | 35, 353, 380, 756, 1336, 1522, 1527, 1578 |
| EarI | CTCTTC | 8 cut(s) | 35, 353, 380, 756, 1336, 1522, 1527, 1578 |
| EciI | GGCGGA | 2 cut(s) | 356, 439 |
| Ecl136II | GAGCTC | 2 cut(s) | 505, 1360 |
| Eco105I | TACGTA | 1 cut(s) | 528 |
| Eco130I | CCWWGG | 3 cut(s) | 104, 533, 1123 |
| Eco24I | GRGCYC | 3 cut(s) | 507, 1215, 1362 |
| Eco47I | GGWCC | 1 cut(s) | 941 |
| Eco53kI | GAGCTC | 2 cut(s) | 505, 1360 |
| Eco57I | CTGAAG | 1 cut(s) | 140 |
| EcoICRI | GAGCTC | 2 cut(s) | 505, 1360 |
| EcoRII | CCWGG | 2 cut(s) | 622, 1214 |
| EcoT14I | CCWWGG | 3 cut(s) | 104, 533, 1123 |
| EcoT22I | ATGCAT | 1 cut(s) | 1564 |
| EcoT38I | GRGCYC | 3 cut(s) | 507, 1215, 1362 |
| ErhI | CCWWGG | 3 cut(s) | 104, 533, 1123 |
| Esp3I | CGTCTC | 1 cut(s) | 298 |
| FaeI | CATG | 4 cut(s) | 108, 537, 1046, 1566 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 569, 601 |
| FaqI | GGGAC | 7 cut(s) | 7, 621, 845, 927, 964, 1468, 1580 |
| FatI | CATG | 4 cut(s) | 104, 533, 1042, 1562 |
| FauI | CCCGC | 2 cut(s) | 226, 292 |
| FbaI | TGATCA | 2 cut(s) | 592, 1131 |
| FblI | GTMKAC | 1 cut(s) | 1113 |
| Fnu4HI | GCNGC | 3 cut(s) | 211, 1254, 1405 |
| FokI | GGATG | 7 cut(s) | 403, 710, 716, 950, 993, 1196, 1243 |
| FriOI | GRGCYC | 3 cut(s) | 507, 1215, 1362 |
| Fsp4HI | GCNGC | 3 cut(s) | 211, 1254, 1405 |
| FspBI | CTAG | 2 cut(s) | 1019, 1368 |
| GlaI | GCGC | 1 cut(s) | 1403 |
| GluI | GCNGC | 3 cut(s) | 211, 1254, 1405 |
| GsuI | CTGGAG | 1 cut(s) | 593 |
| HaeIII | GGCC | 1 cut(s) | 109 |
| HapII | CCGG | 5 cut(s) | 254, 275, 461, 1196, 1435 |
| HhaI | GCGC | 1 cut(s) | 1404 |
| Hin1II | CATG | 4 cut(s) | 108, 537, 1046, 1566 |
| Hin6I | GCGC | 1 cut(s) | 1402 |
| HinP1I | GCGC | 1 cut(s) | 1402 |
| HincII | GTYRAC | 1 cut(s) | 175 |
| HindII | GTYRAC | 1 cut(s) | 175 |
| HinfI | GANTC | 7 cut(s) | 225, 239, 257, 263, 404, 1190, 1532 |
| HpaII | CCGG | 5 cut(s) | 254, 275, 461, 1196, 1435 |
| HphI | GGTGA | 7 cut(s) | 662, 688, 805, 976, 1185, 1328, 1356 |
| Hpy166II | GTNNAC | 5 cut(s) | 175, 525, 565, 967, 1114 |
| Hpy188I | TCNGA | 8 cut(s) | 86, 244, 262, 268, 298, 409, 1157, 1499 |
| Hpy188III | TCNNGA | 6 cut(s) | 99, 310, 590, 602, 617, 1055 |
| Hpy8I | GTNNAC | 5 cut(s) | 175, 525, 565, 967, 1114 |
| Hpy99I | CGWCG | 1 cut(s) | 1017 |
| HpyAV | CCTTC | 8 cut(s) | 35, 44, 535, 661, 667, 688, 820, 1483 |
| HpyCH4III | ACNGT | 3 cut(s) | 955, 997, 1145 |
| HpyCH4IV | ACGT | 6 cut(s) | 482, 521, 527, 1012, 1207, 1372 |
| HpyCH4V | TGCA | 5 cut(s) | 67, 487, 1256, 1478, 1562 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1219, 1559 |
| HpyF3I | CTNAG | 9 cut(s) | 83, 186, 227, 241, 295, 876, 918, 1104, 1408 |
| HpySE526I | ACGT | 6 cut(s) | 482, 521, 527, 1012, 1207, 1372 |
| Hsp92II | CATG | 4 cut(s) | 108, 537, 1046, 1566 |
| HspAI | GCGC | 1 cut(s) | 1402 |
| Ksp22I | TGATCA | 2 cut(s) | 592, 1131 |
| Kzo9I | GATC | 5 cut(s) | 168, 592, 1057, 1131, 1272 |
| LguI | GCTCTTC | 1 cut(s) | 1527 |
| LmnI | GCTCC | 4 cut(s) | 502, 892, 1219, 1451 |
| Lsp1109I | GCAGC | 2 cut(s) | 1240, 1416 |
| LweI | GCATC | 3 cut(s) | 862, 1174, 1265 |
| MabI | ACCWGGT | 1 cut(s) | 622 |
| MaeI | CTAG | 2 cut(s) | 1019, 1368 |
| MaeII | ACGT | 6 cut(s) | 482, 521, 527, 1012, 1207, 1372 |
| MaeIII | GTNAC | 3 cut(s) | 814, 1139, 1438 |
| MalI | GATC | 5 cut(s) | 170, 594, 1059, 1133, 1274 |
| MboI | GATC | 5 cut(s) | 168, 592, 1057, 1131, 1272 |
| MfeI | CAATTG | 1 cut(s) | 1536 |
| MflI | RGATCY | 1 cut(s) | 1272 |
| MhlI | GDGCHC | 4 cut(s) | 507, 1215, 1362, 1510 |
| MluCI | AATT | 6 cut(s) | 1080, 1380, 1423, 1536, 1544, 1590 |
| MlyI | GAGTC | 2 cut(s) | 219, 233 |
| MmeI | TCCRAC | 3 cut(s) | 65, 1072, 1291 |
| Mph1103I | ATGCAT | 1 cut(s) | 1564 |
| MroXI | GAANNNNTTC | 2 cut(s) | 403, 1531 |
| MseI | TTAA | 3 cut(s) | 843, 1079, 1514 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1106 |
| MspA1I | CMGCKG | 1 cut(s) | 571 |
| MspI | CCGG | 5 cut(s) | 254, 275, 461, 1196, 1435 |
| MspR9I | CCNGG | 4 cut(s) | 254, 624, 1216, 1436 |
| MunI | CAATTG | 1 cut(s) | 1536 |
| MvaI | CCWGG | 2 cut(s) | 624, 1216 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1219, 1559 |
| NciI | CCSGG | 2 cut(s) | 254, 1436 |
| NcoI | CCATGG | 2 cut(s) | 104, 533 |
| NdeII | GATC | 5 cut(s) | 168, 592, 1057, 1131, 1272 |
| NlaIII | CATG | 4 cut(s) | 108, 537, 1046, 1566 |
| NlaIV | GGNNCC | 3 cut(s) | 400, 894, 943 |
| NsiI | ATGCAT | 1 cut(s) | 1564 |
| NspI | RCATGY | 1 cut(s) | 1046 |
| NspV | TTCGAA | 1 cut(s) | 1525 |
| OliI | CACNNNNGTG | 1 cut(s) | 1106 |
| PaeI | GCATGC | 1 cut(s) | 1046 |
| PasI | CCCWGGG | 1 cut(s) | 1215 |
| PciSI | GCTCTTC | 1 cut(s) | 1527 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 168 |
| PdmI | GAANNNNTTC | 2 cut(s) | 403, 1531 |
| PfeI | GAWTC | 5 cut(s) | 257, 263, 404, 1190, 1532 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 981 |
| PinAI | ACCGGT | 1 cut(s) | 1195 |
| PkrI | GCNGC | 3 cut(s) | 212, 1255, 1406 |
| PleI | GAGTC | 2 cut(s) | 219, 233 |
| PpsI | GAGTC | 2 cut(s) | 219, 233 |
| Ppu21I | YACGTR | 1 cut(s) | 528 |
| PshBI | ATTAAT | 1 cut(s) | 1079 |
| Psp124BI | GAGCTC | 2 cut(s) | 507, 1362 |
| Psp6I | CCWGG | 2 cut(s) | 622, 1214 |
| PspGI | CCWGG | 2 cut(s) | 622, 1214 |
| PspN4I | GGNNCC | 3 cut(s) | 400, 894, 943 |
| PspPI | GGNCC | 1 cut(s) | 941 |
| PsuI | RGATCY | 1 cut(s) | 1272 |
| PvuII | CAGCTG | 1 cut(s) | 571 |
| RsaI | GTAC | 7 cut(s) | 93, 161, 368, 395, 566, 584, 1284 |
| RsaNI | GTAC | 7 cut(s) | 92, 160, 367, 394, 565, 583, 1283 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1106 |
| SacI | GAGCTC | 2 cut(s) | 507, 1362 |
| SapI | GCTCTTC | 1 cut(s) | 1527 |
| SaqAI | TTAA | 3 cut(s) | 843, 1079, 1514 |
| SatI | GCNGC | 3 cut(s) | 211, 1254, 1405 |
| Sau3AI | GATC | 5 cut(s) | 168, 592, 1057, 1131, 1272 |
| Sau96I | GGNCC | 1 cut(s) | 941 |
| ScaI | AGTACT | 2 cut(s) | 368, 584 |
| SchI | GAGTC | 2 cut(s) | 219, 233 |
| ScrFI | CCNGG | 4 cut(s) | 254, 624, 1216, 1436 |
| SduI | GDGCHC | 4 cut(s) | 507, 1215, 1362, 1510 |
| SexAI | ACCWGGT | 1 cut(s) | 622 |
| SfaNI | GCATC | 3 cut(s) | 862, 1174, 1265 |
| SfuI | TTCGAA | 1 cut(s) | 1525 |
| SinI | GGWCC | 1 cut(s) | 941 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1106 |
| SnaBI | TACGTA | 1 cut(s) | 528 |
| SphI | GCATGC | 1 cut(s) | 1046 |
| Sse9I | AATT | 6 cut(s) | 1080, 1380, 1423, 1536, 1544, 1590 |
| SsiI | CCGC | 7 cut(s) | 178, 211, 219, 285, 341, 424, 1551 |
| SspMI | CTAG | 2 cut(s) | 1019, 1368 |
| SstI | GAGCTC | 2 cut(s) | 507, 1362 |
| StyD4I | CCNGG | 4 cut(s) | 252, 622, 1214, 1434 |
| StyI | CCWWGG | 3 cut(s) | 104, 533, 1123 |
| TaaI | ACNGT | 3 cut(s) | 955, 997, 1145 |
| TaiI | ACGT | 6 cut(s) | 485, 524, 530, 1015, 1210, 1375 |
| TaqI | TCGA | 6 cut(s) | 100, 198, 309, 356, 603, 1525 |
| TaqII | GACCGA | 1 cut(s) | 1455 |
| TasI | AATT | 6 cut(s) | 1080, 1380, 1423, 1536, 1544, 1590 |
| TatI | WGTACW | 2 cut(s) | 366, 582 |
| TauI | GCSGC | 1 cut(s) | 213 |
| TfiI | GAWTC | 5 cut(s) | 257, 263, 404, 1190, 1532 |
| Tru1I | TTAA | 3 cut(s) | 843, 1079, 1514 |
| Tru9I | TTAA | 3 cut(s) | 843, 1079, 1514 |
| TscAI | CASTG | 2 cut(s) | 602, 1150 |
| TseI | GCWGC | 2 cut(s) | 1253, 1404 |
| TspDTI | ATGAA | 2 cut(s) | 774, 1248 |
| TspGWI | ACGGA | 3 cut(s) | 280, 411, 1131 |
| TspRI | CASTG | 2 cut(s) | 602, 1150 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 981 |
| VpaK11BI | GGWCC | 1 cut(s) | 941 |
| VspI | ATTAAT | 1 cut(s) | 1079 |
| XapI | RAATTY | 2 cut(s) | 1423, 1544 |
| XceI | RCATGY | 1 cut(s) | 1046 |
| XmiI | GTMKAC | 1 cut(s) | 1113 |
| XmnI | GAANNNNTTC | 2 cut(s) | 403, 1531 |
| XspI | CTAG | 2 cut(s) | 1019, 1368 |
| ZrmI | AGTACT | 2 cut(s) | 368, 584 |
| Zsp2I | ATGCAT | 1 cut(s) | 1564 |