AT5G14780

Catalyzes the NAD( )-dependent oxidation of formate to carbon dioxide. Involved in the cell stress response

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
4776733 .. 4779526
2794 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G14780.1

Sequence Viewer

Length: 1155 bp
ATGGCGATGAGACAAGCCGCTAAGGCAACGATCAGGGCCTGTTCTTCCTCTTCTTCTTCGGGTTACTTCGCTCGACGTCAGTTTAATGCATCTTCTGGTGATAGCAAAAAGATTGTAGGAGTTTTCTACAAGGCCAACGAATACGCTACCAAGAACCCTAACTTCCTTGGCTGCGTCGAGAATGCCTTAGGAATCCGTGACTGGCTTGAATCCCAAGGACATCAGTACATCGTCACTGATGACAAGGAAGGCCCTGATTGCGAACTTGAGAAACATATCCCGGATCTTCACGTCCTAATCTCCACTCCCTTCCACCCGGCGTATGTAACTGCTGAAAGAATCAAGAAAGCCAAAAACTTGAAGCTTCTCCTCACAGCTGGTATTGGCTCGGATCATATTGATCTCCAGGCAGCTGCAGCTGCTGGCCTGACGGTTGCTGAAGTCACGGGAAGCAACGTGGTCTCAGTGGCAGAAGATGAGCTCATGAGAATCTTAATCCTCATGCGCAACTTCGTACCAGGGTACAACCAGGTCGTCAAAGGCGAGTGGAACGTCGCGGGCATTGCGTACAGAGCTTATGATCTTGAAGGGAAGACGATAGGAACCGTGGGAGCTGGAAGAATCGGAAAGCTTTTGCTGCAGCGGTTGAAACCATTCGGGTGTAACTTGTTGTACCATGACAGGCTTCAGATGGCACCAGAGCTGGAGAAAGAGACTGGAGCTAAGTTCGTTGAGGATCTGAATGAAATGCTCCCTAAATGTGACGTTATAGTCATCAACATGCCTCTCACGGAGAAGACAAGAGGAATGTTCAACAAAGAGTTGATAGGGAAATTGAAGAAAGGCGTTTTGATAGTGAACAACGCAAGAGGAGCCATCATGGAGAGGCAAGCAGTGGTGGATGCGGTGGAGAGTGGACACATTGGAGGGTACAGCGGAGACGTTTGGGACCCACAGCCAGCTCCTAAGGACCATCCATGGCGTTACATGCCTAACCAGGCTATGACCCCTCATACCTCCGGCACCACCATTGACGCTCAGCTACGGTATGCGGCGGGGACGAAAGACATGTTGGAGAGATACTTCAAGGGAGAAGACTTCCCTACTGAGAATTACATCGTCAAGGACGGTGAACTTGCTCCTCAGTACCGGTAA

Protein Analysis

384

Amino Acids

42.41

Weight (kDa)

7.12

Isoelectric Point (pI)

28.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2-Hacid_dh PF00389 69 - 366 1e-15 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C PF02826 162 - 340 1.3e-51 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
NAD_binding_2 PF03446 199 - 291 3.5e-06 NAD binding domain of 6-phosphogluconate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 770
AatII GACGTC 1 cut(s) 79
Acc16I TGCGCA 1 cut(s) 506
AccB1I GGYRCC 2 cut(s) 694, 1022
AccII CGCG 1 cut(s) 557
AciI CCGC 7 cut(s) 18, 557, 643, 905, 936, 1052, 1055
AclWI GGATC 3 cut(s) 291, 399, 744
AcuI CTGAAG 2 cut(s) 459, 671
AcyI GRCGYC 1 cut(s) 76
AfaI GTAC 7 cut(s) 227, 516, 524, 569, 674, 932, 1148
AflIII ACRYGT 1 cut(s) 1068
AgeI ACCGGT 1 cut(s) 1149
AgsI TTSAA 7 cut(s) 209, 361, 587, 649, 814, 838, 1087
AjiI CACGTC 1 cut(s) 292
AjnI CCWGG 4 cut(s) 405, 517, 528, 996
AjuI GAANNNNNNNTTGG 2 cut(s) 1055, 1087
Alw21I GWGCWC 1 cut(s) 483
Alw26I GTCTC 4 cut(s) 4, 466, 707, 933
AlwI GGATC 3 cut(s) 291, 399, 744
AlwNI CAGNNNCTG 2 cut(s) 39, 422
AoxI GGCC 4 cut(s) 36, 132, 250, 424
ApeKI GCWGC 7 cut(s) 171, 410, 413, 416, 419, 637, 640
AsiGI ACCGGT 1 cut(s) 1149
Asp700I GAANNNNTTC 1 cut(s) 653
AspLEI GCGC 1 cut(s) 507
AspS9I GGNCC 4 cut(s) 36, 251, 949, 970
AsuC2I CCSGG 2 cut(s) 281, 317
AsuHPI GGTGA 2 cut(s) 110, 1142
AvaII GGWCC 2 cut(s) 949, 970
AxyI CCTNAGG 2 cut(s) 187, 966
BanI GGYRCC 2 cut(s) 694, 1022
BanII GRGCYC 1 cut(s) 483
BbsI GAAGAC 3 cut(s) 599, 803, 1101
Bbv12I GWGCWC 1 cut(s) 483
BbvI GCAGC 7 cut(s) 158, 400, 406, 422, 428, 624, 652
BccI CCATC 3 cut(s) 685, 884, 981
BciT130I CCWGG 4 cut(s) 407, 519, 530, 998
BcnI CCSGG 2 cut(s) 281, 317
BcoDI GTCTC 4 cut(s) 4, 466, 707, 933
BfmI CTRYAG 2 cut(s) 414, 638
BglI GCCNNNNNGGC 1 cut(s) 23
BisI GCNGC 9 cut(s) 18, 172, 411, 414, 417, 420, 638, 641, 1053
BlpI GCTNAGC 1 cut(s) 1038
BlsI GCNGC 9 cut(s) 19, 173, 412, 415, 418, 421, 639, 642, 1054
Bme1390I CCNGG 6 cut(s) 281, 317, 407, 519, 530, 998
Bme18I GGWCC 2 cut(s) 949, 970
BmgBI CACGTC 1 cut(s) 292
BmgT120I GGNCC 4 cut(s) 36, 251, 949, 970
BmiI GGNNCC 6 cut(s) 604, 696, 874, 950, 951, 1024
BmrFI CCNGG 6 cut(s) 281, 317, 407, 519, 530, 998
BmsI GCATC 2 cut(s) 98, 892
BpiI GAAGAC 3 cut(s) 599, 803, 1101
BpmI CTGGAG 3 cut(s) 389, 725, 738
Bpu10I CCTNAGC 1 cut(s) 21
Bpu1102I GCTNAGC 1 cut(s) 1038
BpuEI CTTGAG 1 cut(s) 287
BpuMI CCSGG 2 cut(s) 281, 317
BsaHI GRCGYC 1 cut(s) 76
BsaI GGTCTC 1 cut(s) 466
BsaJI CCNNGG 5 cut(s) 166, 214, 518, 606, 977
BsaWI WCCGGW 1 cut(s) 1149
Bse118I RCCGGY 1 cut(s) 1149
Bse1I ACTGG 2 cut(s) 206, 721
Bse21I CCTNAGG 2 cut(s) 187, 966
Bse3DI GCAATG 1 cut(s) 561
BseBI CCWGG 4 cut(s) 407, 519, 530, 998
BseDI CCNNGG 5 cut(s) 166, 214, 518, 606, 977
BseGI GGATG 2 cut(s) 907, 973
BseMI GCAATG 1 cut(s) 561
BseMII CTCAG 3 cut(s) 477, 1052, 1098
BseNI ACTGG 2 cut(s) 206, 721
BseRI GAGGAG 3 cut(s) 359, 885, 1131
BseXI GCAGC 7 cut(s) 158, 400, 406, 422, 428, 624, 652
Bsh1236I CGCG 1 cut(s) 557
BshFI GGCC 4 cut(s) 38, 134, 252, 426
BshNI GGYRCC 2 cut(s) 694, 1022
BshTI ACCGGT 1 cut(s) 1149
BsiHKAI GWGCWC 1 cut(s) 483
BsiSI CCGG 4 cut(s) 281, 317, 1020, 1150
BslFI GGGAC 2 cut(s) 962, 1072
BsmAI GTCTC 4 cut(s) 4, 466, 707, 933
BsmBI CGTCTC 1 cut(s) 933
BsmFI GGGAC 2 cut(s) 962, 1072
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 4 cut(s) 38, 134, 252, 426
Bso31I GGTCTC 1 cut(s) 466
Bsp1286I GDGCHC 1 cut(s) 483
Bsp143I GATC 6 cut(s) 30, 283, 391, 400, 580, 736
Bsp1720I GCTNAGC 1 cut(s) 1038
Bsp19I CCATGG 1 cut(s) 977
BspACI CCGC 7 cut(s) 18, 557, 643, 905, 936, 1052, 1055
BspANI GGCC 4 cut(s) 38, 134, 252, 426
BspCNI CTCAG 3 cut(s) 476, 1051, 1099
BspFNI CGCG 1 cut(s) 557
BspHI TCATGA 1 cut(s) 483
BspLI GGNNCC 6 cut(s) 604, 696, 874, 950, 951, 1024
BspMAI CTGCAG 2 cut(s) 418, 642
BspPI GGATC 3 cut(s) 291, 399, 744
BspT107I GGYRCC 2 cut(s) 694, 1022
BspTNI GGTCTC 1 cut(s) 466
BsrDI GCAATG 1 cut(s) 561
BsrFI RCCGGY 1 cut(s) 1149
BsrI ACTGG 2 cut(s) 206, 721
BssAI RCCGGY 1 cut(s) 1149
BssECI CCNNGG 5 cut(s) 166, 214, 518, 606, 977
BssMI GATC 6 cut(s) 30, 283, 391, 400, 580, 736
BssNI GRCGYC 1 cut(s) 76
BssT1I CCWWGG 3 cut(s) 166, 214, 977
Bst2UI CCWGG 4 cut(s) 407, 519, 530, 998
Bst4CI ACNGT 4 cut(s) 433, 607, 1047, 1130
Bst6I CTCTTC 1 cut(s) 55
BstACI GRCGYC 1 cut(s) 76
BstC8I GCNNGC 4 cut(s) 424, 559, 891, 960
BstDEI CTNAG 8 cut(s) 21, 187, 463, 723, 966, 1038, 1107, 1143
BstDSI CCRYGG 2 cut(s) 606, 977
BstF5I GGATG 2 cut(s) 907, 973
BstFNI CGCG 1 cut(s) 557
BstHHI GCGC 1 cut(s) 507
BstKTI GATC 6 cut(s) 33, 286, 394, 403, 583, 739
BstMAI GTCTC 4 cut(s) 4, 466, 707, 933
BstMBI GATC 6 cut(s) 30, 283, 391, 400, 580, 736
BstMWI GCNNNNNNNGC 9 cut(s) 23, 258, 416, 419, 563, 572, 637, 872, 988
BstNI CCWGG 4 cut(s) 407, 519, 530, 998
BstNSI RCATGY 3 cut(s) 784, 991, 1072
BstSCI CCNGG 6 cut(s) 279, 315, 405, 517, 528, 996
BstSFI CTRYAG 2 cut(s) 414, 638
BstUI CGCG 1 cut(s) 557
BstV1I GCAGC 7 cut(s) 158, 400, 406, 422, 428, 624, 652
BstV2I GAAGAC 3 cut(s) 599, 803, 1101
BstX2I RGATCY 2 cut(s) 283, 736
BstYI RGATCY 2 cut(s) 283, 736
Bsu36I CCTNAGG 2 cut(s) 187, 966
BsuRI GGCC 4 cut(s) 38, 134, 252, 426
BtgI CCRYGG 2 cut(s) 606, 977
BtgZI GCGATG 1 cut(s) 20
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 2 cut(s) 907, 973
BtsI GCAGTG 1 cut(s) 900
BtsIMutI CAGTG 3 cut(s) 234, 471, 900
Cac8I GCNNGC 4 cut(s) 424, 559, 891, 960
CaiI CAGNNNCTG 2 cut(s) 39, 422
CciI TCATGA 1 cut(s) 483
CfoI GCGC 1 cut(s) 507
Cfr10I RCCGGY 1 cut(s) 1149
Cfr13I GGNCC 4 cut(s) 36, 251, 949, 970
CseI GACGC 2 cut(s) 163, 1043
CsiI ACCWGGT 1 cut(s) 528
Csp6I GTAC 7 cut(s) 226, 515, 523, 568, 673, 931, 1147
CspAI ACCGGT 1 cut(s) 1149
CviAII CATG 8 cut(s) 484, 502, 677, 781, 880, 978, 988, 1069
CviQI GTAC 7 cut(s) 226, 515, 523, 568, 673, 931, 1147
DdeI CTNAG 8 cut(s) 21, 187, 463, 723, 966, 1038, 1107, 1143
DpnI GATC 6 cut(s) 32, 285, 393, 402, 582, 738
DpnII GATC 6 cut(s) 30, 283, 391, 400, 580, 736
DrdI GACNNNNNNGTC 1 cut(s) 770
DseDI GACNNNNNNGTC 1 cut(s) 770
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
Ecl136II GAGCTC 1 cut(s) 481
Eco130I CCWWGG 3 cut(s) 166, 214, 977
Eco24I GRGCYC 1 cut(s) 483
Eco31I GGTCTC 1 cut(s) 466
Eco47I GGWCC 2 cut(s) 949, 970
Eco53kI GAGCTC 1 cut(s) 481
Eco57I CTGAAG 2 cut(s) 459, 671
Eco81I CCTNAGG 2 cut(s) 187, 966
EcoICRI GAGCTC 1 cut(s) 481
EcoO109I RGGNCCY 3 cut(s) 36, 251, 949
EcoRII CCWGG 4 cut(s) 405, 517, 528, 996
EcoT14I CCWWGG 3 cut(s) 166, 214, 977
EcoT22I ATGCAT 1 cut(s) 91
EcoT38I GRGCYC 1 cut(s) 483
ErhI CCWWGG 3 cut(s) 166, 214, 977
Esp3I CGTCTC 1 cut(s) 933
FaeI CATG 8 cut(s) 487, 505, 680, 784, 883, 981, 991, 1072
FaqI GGGAC 2 cut(s) 962, 1072
FatI CATG 8 cut(s) 483, 501, 676, 780, 879, 977, 987, 1068
FauI CCCGC 2 cut(s) 550, 1048
Fnu4HI GCNGC 9 cut(s) 18, 172, 411, 414, 417, 420, 638, 641, 1053
FokI GGATG 2 cut(s) 914, 960
FriOI GRGCYC 1 cut(s) 483
Fsp4HI GCNGC 9 cut(s) 18, 172, 411, 414, 417, 420, 638, 641, 1053
FspI TGCGCA 1 cut(s) 506
GlaI GCGC 1 cut(s) 506
GluI GCNGC 9 cut(s) 18, 172, 411, 414, 417, 420, 638, 641, 1053
GsuI CTGGAG 3 cut(s) 389, 725, 738
HaeIII GGCC 4 cut(s) 38, 134, 252, 426
HapII CCGG 4 cut(s) 281, 317, 1020, 1150
HgaI GACGC 2 cut(s) 163, 1043
HhaI GCGC 1 cut(s) 507
Hin1I GRCGYC 1 cut(s) 76
Hin1II CATG 8 cut(s) 487, 505, 680, 784, 883, 981, 991, 1072
Hin6I GCGC 1 cut(s) 505
HinP1I GCGC 1 cut(s) 505
HindIII AAGCTT 2 cut(s) 362, 629
HinfI GANTC 5 cut(s) 192, 209, 339, 489, 621
HpaII CCGG 4 cut(s) 281, 317, 1020, 1150
HphI GGTGA 2 cut(s) 110, 1142
Hpy166II GTNNAC 3 cut(s) 859, 917, 1133
Hpy188I TCNGA 4 cut(s) 391, 626, 690, 741
Hpy188III TCNNGA 4 cut(s) 178, 343, 484, 584
Hpy8I GTNNAC 3 cut(s) 859, 917, 1133
Hpy99I CGWCG 3 cut(s) 78, 179, 557
HpyAV CCTTC 3 cut(s) 242, 319, 581
HpyCH4III ACNGT 4 cut(s) 433, 607, 1047, 1130
HpyCH4IV ACGT 6 cut(s) 76, 291, 456, 552, 765, 942
HpyCH4V TGCA 3 cut(s) 89, 416, 640
HpyF10VI GCNNNNNNNGC 9 cut(s) 23, 258, 416, 419, 563, 572, 637, 872, 988
HpyF3I CTNAG 8 cut(s) 21, 187, 463, 723, 966, 1038, 1107, 1143
HpySE526I ACGT 6 cut(s) 76, 291, 456, 552, 765, 942
Hsp92I GRCGYC 1 cut(s) 76
Hsp92II CATG 8 cut(s) 487, 505, 680, 784, 883, 981, 991, 1072
HspAI GCGC 1 cut(s) 505
KflI GGGWCCC 1 cut(s) 949
Kzo9I GATC 6 cut(s) 30, 283, 391, 400, 580, 736
LmnI GCTCC 6 cut(s) 611, 719, 756, 872, 967, 1144
Lsp1109I GCAGC 7 cut(s) 158, 400, 406, 422, 428, 624, 652
LweI GCATC 2 cut(s) 98, 892
MabI ACCWGGT 1 cut(s) 528
MaeII ACGT 6 cut(s) 76, 291, 456, 552, 765, 942
MaeIII GTNAC 8 cut(s) 62, 197, 232, 325, 442, 662, 761, 983
MalI GATC 6 cut(s) 32, 285, 393, 402, 582, 738
MboI GATC 6 cut(s) 30, 283, 391, 400, 580, 736
MflI RGATCY 2 cut(s) 283, 736
MhlI GDGCHC 1 cut(s) 483
MluCI AATT 2 cut(s) 833, 1111
MmeI TCCRAC 1 cut(s) 1053
Mph1103I ATGCAT 1 cut(s) 91
MroXI GAANNNNTTC 1 cut(s) 653
MseI TTAA 2 cut(s) 84, 494
MslI CAYNNNNRTG 2 cut(s) 658, 779
MspA1I CMGCKG 5 cut(s) 377, 413, 419, 643, 936
MspI CCGG 4 cut(s) 281, 317, 1020, 1150
MspR9I CCNGG 6 cut(s) 281, 317, 407, 519, 530, 998
Mva1269I GAATGC 1 cut(s) 187
MvaI CCWGG 4 cut(s) 407, 519, 530, 998
MvnI CGCG 1 cut(s) 557
MwoI GCNNNNNNNGC 9 cut(s) 23, 258, 416, 419, 563, 572, 637, 872, 988
NciI CCSGG 2 cut(s) 281, 317
NcoI CCATGG 1 cut(s) 977
NdeII GATC 6 cut(s) 30, 283, 391, 400, 580, 736
NlaIII CATG 8 cut(s) 487, 505, 680, 784, 883, 981, 991, 1072
NlaIV GGNNCC 6 cut(s) 604, 696, 874, 950, 951, 1024
NmuCI GTSAC 4 cut(s) 197, 232, 442, 761
NsbI TGCGCA 1 cut(s) 506
NsiI ATGCAT 1 cut(s) 91
NspI RCATGY 3 cut(s) 784, 991, 1072
PagI TCATGA 1 cut(s) 483
PciI ACATGT 1 cut(s) 1068
PcsI WCGNNNNNNNCGW 1 cut(s) 540
PctI GAATGC 1 cut(s) 187
PdmI GAANNNNTTC 1 cut(s) 653
PfeI GAWTC 5 cut(s) 192, 209, 339, 489, 621
PfoI TCCNGGA 1 cut(s) 279
PinAI ACCGGT 1 cut(s) 1149
PkrI GCNGC 9 cut(s) 19, 173, 412, 415, 418, 421, 639, 642, 1054
PpuMI RGGWCCY 1 cut(s) 949
PscI ACATGT 1 cut(s) 1068
Psp124BI GAGCTC 1 cut(s) 483
Psp5II RGGWCCY 1 cut(s) 949
Psp6I CCWGG 4 cut(s) 405, 517, 528, 996
PspGI CCWGG 4 cut(s) 405, 517, 528, 996
PspN4I GGNNCC 6 cut(s) 604, 696, 874, 950, 951, 1024
PspPI GGNCC 4 cut(s) 36, 251, 949, 970
PspPPI RGGWCCY 1 cut(s) 949
PstI CTGCAG 2 cut(s) 418, 642
PstNI CAGNNNCTG 2 cut(s) 39, 422
PsuI RGATCY 2 cut(s) 283, 736
PvuII CAGCTG 3 cut(s) 377, 413, 419
RsaI GTAC 7 cut(s) 227, 516, 524, 569, 674, 932, 1148
RsaNI GTAC 7 cut(s) 226, 515, 523, 568, 673, 931, 1147
RseI CAYNNNNRTG 2 cut(s) 658, 779
SacI GAGCTC 1 cut(s) 483
SaqAI TTAA 2 cut(s) 84, 494
SatI GCNGC 9 cut(s) 18, 172, 411, 414, 417, 420, 638, 641, 1053
Sau3AI GATC 6 cut(s) 30, 283, 391, 400, 580, 736
Sau96I GGNCC 4 cut(s) 36, 251, 949, 970
ScrFI CCNGG 6 cut(s) 281, 317, 407, 519, 530, 998
SduI GDGCHC 1 cut(s) 483
SexAI ACCWGGT 1 cut(s) 528
SfaNI GCATC 2 cut(s) 98, 892
SfcI CTRYAG 2 cut(s) 414, 638
SinI GGWCC 2 cut(s) 949, 970
SmiMI CAYNNNNRTG 2 cut(s) 658, 779
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 2 cut(s) 833, 1111
SsiI CCGC 7 cut(s) 18, 557, 643, 905, 936, 1052, 1055
SstI GAGCTC 1 cut(s) 483
StyD4I CCNGG 6 cut(s) 279, 315, 405, 517, 528, 996
StyI CCWWGG 3 cut(s) 166, 214, 977
TaaI ACNGT 4 cut(s) 433, 607, 1047, 1130
TaiI ACGT 6 cut(s) 79, 294, 459, 555, 768, 945
TaqI TCGA 2 cut(s) 73, 177
TasI AATT 2 cut(s) 833, 1111
TatI WGTACW 1 cut(s) 225
TauI GCSGC 2 cut(s) 20, 1055
TfiI GAWTC 5 cut(s) 192, 209, 339, 489, 621
Tru1I TTAA 2 cut(s) 84, 494
Tru9I TTAA 2 cut(s) 84, 494
TscAI CASTG 3 cut(s) 241, 471, 900
TseFI GTSAC 4 cut(s) 197, 232, 442, 761
TseI GCWGC 7 cut(s) 171, 410, 413, 416, 419, 637, 640
Tsp45I GTSAC 4 cut(s) 197, 232, 442, 761
TspDTI ATGAA 1 cut(s) 759
TspGWI ACGGA 2 cut(s) 185, 806
TspRI CASTG 3 cut(s) 241, 471, 900
VpaK11BI GGWCC 2 cut(s) 949, 970
XceI RCATGY 3 cut(s) 784, 991, 1072
XmnI GAANNNNTTC 1 cut(s) 653
ZraI GACGTC 1 cut(s) 77
Zsp2I ATGCAT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.