Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007870

Physical Location & Seq

Genomic Coordinates Reverse (-)

37648850 .. 37651444

Gene Structure 2595 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g50630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGCTATGAAGGGTGCGATTGTCTCGGCTGCTAAGGCTCTTGCCTCACCACGCTCATCCTCCACTGTCCTCTCCAGGCACCTCCACGCATCTCCGGGGAGCAAGAAGATTGTTGGGGTGTTCTACAAGGCGAATGAGTATGCCAAACTCAACCCTGATTTTTTGGGTTGTGAGGAAAACGCTTTGGGCATTAGGGACTGGCTGGAATCGCAGGGACACAAATATATTGTTACTGATGACAAGGAGGGACCAAATTGTGAGCTTGAGAAACACATTGAGGATATGCATGTTCTGATCACAACCCCTTTCCACCCTGCCTATGTCACGGCGGAGAGGATTAAAAAGGCCAAGAATTTGCAGCTTCTTTTGACTGCCGGAATTGGCTCTGACCACATTGACCTCAAGGCTGCCGCGGCGGCTGGACTGACGGTTGCTGAGGTCACCGGGAGCAATACTGTGTCGGTTGCGGAAGATGAACTCATGAGAATCCTCATTCTTATGAGGAACTTTGTTCCGGGGTATCAGCAGGCTGTTAATGGGGATTGGAAGGTTGCAGCCATTTCCTACAGGGCTTATGATTTGGAAGGGAAGACAGTTGGTACTGTTGGAGCTGGAAGAATCGGGAAGCTTTTGATGCAAAGGTTGAAGCCTTTCAACTGTAATATCCTCTATCATGACAGAATTAAGGCTGATGCCGAGTTTGAGAAAGAGACCGGGGCTAAGTTCGAGGAGGATCTTGATAAGATGCTTCCGAAATGTGATGTTGTTGTTGTCAACACCCCCCTAACAGAAAAGACAAGGGGGATGTTTGATAAAGAGAGAATTTCCAAGCTCAAGAAGGGAGTCCTGATCGTGAACAATGCCCGTGGGGCAATTATGGACACGCAAGCAGTTGTTGATGCTTGCAACAGTGGACACATAGCAGGTTACAGTGGCGATGTCTGGAACCCCCAACCAGCTCCCAAAGACCATCCATGGCGTTACATGCCAAACCATGCCATGACCCCTCATACATCTGGCACCACAATTGATGGACAGTTACGTTATGCTGCTGGTACCAAGGATATGCTTGACCGGTACTTCAAGGGCGAAGAATTTCCAGCACAAAACTACATTGTCAAGGAGGGCAAGCTAGCAAGCCAGTACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009507 GO:0009536 GO:0009579 GO:0010035 GO:0010038 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00630 ko00680 ko01100 ko01120 ko01200 map00630 map00680 map01100 map01120 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

384

Amino Acids

42.18

Weight (kDa)

8.11

Isoelectric Point (pI)

30.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh	PF00389	69 - 340	3.6e-15	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C	PF02826	161 - 339	1.4e-52	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14780 AT5G14780 AT5G14780
fragaria_vesca	FvH4_6g50630
malus_domestica	MD09G1034400.v1.1 MD17G1034800.v1.1
prunus_persica	Prupe.3G284000_v2.0.a1 Prupe.3G284000_v2.0.a1 Prupe.3G284000_v2.0.a1 Prupe.3G284000_v2.0.a1
pyrus_communis	pycom111g02730 pycom17g03210
rosa_chinensis	RchiOBHm_Chr2g0171431
rosa_laevigata	RLG00000022013
rosa_multiflora	Rmu_sc0007646.1_g000006 Rmu_sc0027265.1_g000001 Rmu_sc0030144.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080660
rosa_rugosa	Rorug02G0554200
rosa_samantha	Rh2AG628500 Rh2CG607600 Rh2DG650000 Rh2DG656000
rosa_wichuraiana	Rw2G052060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	914
Acc65I	GGTACC	1 cut(s)	1055
AccB1I	GGYRCC	3 cut(s)	78, 1019, 1055
AccII	CGCG	1 cut(s)	413
AciI	CCGC	5 cut(s)	329, 411, 413, 416, 467
AclWI	GGATC	1 cut(s)	741
AcsI	RAATTY	3 cut(s)	352, 822, 1094
AfaI	GTAC	4 cut(s)	601, 1057, 1079, 1145
AgeI	ACCGGT	1 cut(s)	1074
AgsI	TTSAA	3 cut(s)	646, 655, 1084
AjnI	CCWGG	1 cut(s)	74
AluBI	AGCT	7 cut(s)	262, 361, 611, 628, 832, 959, 1132
AluI	AGCT	7 cut(s)	262, 361, 611, 628, 832, 959, 1132
Alw26I	GTCTC	2 cut(s)	28, 704
AlwI	GGATC	1 cut(s)	741
AoxI	GGCC	1 cut(s)	345
ApeKI	GCWGC	5 cut(s)	29, 358, 407, 554, 1049
ApoI	RAATTY	3 cut(s)	352, 822, 1094
AsiGI	ACCGGT	1 cut(s)	1074
Asp700I	GAANNNNTTC	2 cut(s)	650, 1095
Asp718I	GGTACC	1 cut(s)	1055
AspS9I	GGNCC	1 cut(s)	248
AsuC2I	CCSGG	4 cut(s)	96, 445, 516, 715
AsuHPI	GGTGA	2 cut(s)	39, 433
AsuNHI	GCTAGC	1 cut(s)	1132
AvaII	GGWCC	1 cut(s)	248
BanI	GGYRCC	3 cut(s)	78, 1019, 1055
BbsI	GAAGAC	1 cut(s)	596
BbvCI	CCTCAGC	1 cut(s)	435
BbvI	GCAGC	5 cut(s)	16, 370, 394, 566, 1036
BccI	CCATC	2 cut(s)	978, 1025
BceAI	ACGGC	1 cut(s)	342
BciT130I	CCWGG	1 cut(s)	76
BclI	TGATCA	1 cut(s)	294
BcnI	CCSGG	4 cut(s)	96, 445, 516, 715
BcoDI	GTCTC	2 cut(s)	28, 704
BfaI	CTAG	1 cut(s)	1133
BfmI	CTRYAG	1 cut(s)	565
BfuAI	ACCTGC	1 cut(s)	914
BglI	GCCNNNNNGGC	2 cut(s)	416, 869
BisI	GCNGC	8 cut(s)	30, 359, 408, 411, 414, 417, 555, 1050
BlsI	GCNGC	8 cut(s)	31, 360, 409, 412, 415, 418, 556, 1051
Bme1390I	CCNGG	5 cut(s)	76, 96, 445, 516, 715
Bme18I	GGWCC	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	248
BmiI	GGNNCC	5 cut(s)	80, 249, 947, 1021, 1057
BmrFI	CCNGG	5 cut(s)	76, 96, 445, 516, 715
BmsI	GCATC	5 cut(s)	98, 624, 682, 735, 889
BmtI	GCTAGC	1 cut(s)	1136
BpiI	GAAGAC	1 cut(s)	596
BpmI	CTGGAG	1 cut(s)	58
Bpu10I	CCTNAGC	2 cut(s)	33, 435
BpuEI	CTTGAG	3 cut(s)	284, 386, 818
BpuMI	CCSGG	4 cut(s)	96, 445, 516, 715
BsaI	GGTCTC	1 cut(s)	704
BsaJI	CCNNGG	7 cut(s)	95, 411, 515, 714, 865, 974, 1059
BsaWI	WCCGGW	1 cut(s)	1074
Bse118I	RCCGGY	1 cut(s)	1074
Bse1I	ACTGG	3 cut(s)	203, 1141, 1147
BseBI	CCWGG	1 cut(s)	76
BseDI	CCNNGG	7 cut(s)	95, 411, 515, 714, 865, 974, 1059
BseGI	GGATG	3 cut(s)	56, 810, 970
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	3 cut(s)	203, 1141, 1147
BseRI	GAGGAG	1 cut(s)	743
BseXI	GCAGC	5 cut(s)	16, 370, 394, 566, 1036
Bsh1236I	CGCG	1 cut(s)	413
BshFI	GGCC	1 cut(s)	347
BshNI	GGYRCC	3 cut(s)	78, 1019, 1055
BshTI	ACCGGT	1 cut(s)	1074
BsiSI	CCGG	6 cut(s)	95, 375, 444, 515, 714, 1075
BslFI	GGGAC	3 cut(s)	209, 228, 261
BsmAI	GTCTC	2 cut(s)	28, 704
BsmFI	GGGAC	3 cut(s)	209, 228, 261
BsnI	GGCC	1 cut(s)	347
Bso31I	GGTCTC	1 cut(s)	704
Bsp143I	GATC	3 cut(s)	294, 733, 849
Bsp19I	CCATGG	1 cut(s)	974
BspACI	CCGC	5 cut(s)	329, 411, 413, 416, 467
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	1 cut(s)	427
BspFNI	CGCG	1 cut(s)	413
BspHI	TCATGA	2 cut(s)	480, 673
BspLI	GGNNCC	5 cut(s)	80, 249, 947, 1021, 1057
BspMI	ACCTGC	1 cut(s)	914
BspOI	GCTAGC	1 cut(s)	1136
BspPI	GGATC	1 cut(s)	741
BspT107I	GGYRCC	3 cut(s)	78, 1019, 1055
BspTNI	GGTCTC	1 cut(s)	704
BsrFI	RCCGGY	1 cut(s)	1074
BsrI	ACTGG	3 cut(s)	203, 1141, 1147
BssAI	RCCGGY	1 cut(s)	1074
BssECI	CCNNGG	7 cut(s)	95, 411, 515, 714, 865, 974, 1059
BssMI	GATC	3 cut(s)	294, 733, 849
BssT1I	CCWWGG	2 cut(s)	974, 1059
Bst2UI	CCWGG	1 cut(s)	76
Bst4CI	ACNGT	9 cut(s)	67, 430, 457, 595, 604, 659, 911, 932, 1038
BstC8I	GCNNGC	6 cut(s)	528, 888, 904, 1130, 1134, 1138
BstDEI	CTNAG	3 cut(s)	33, 435, 720
BstDSI	CCRYGG	3 cut(s)	411, 865, 974
BstEII	GGTNACC	1 cut(s)	439
BstF5I	GGATG	3 cut(s)	56, 810, 970
BstFNI	CGCG	1 cut(s)	413
BstKTI	GATC	3 cut(s)	297, 736, 852
BstMAI	GTCTC	2 cut(s)	28, 704
BstMBI	GATC	3 cut(s)	294, 733, 849
BstMWI	GCNNNNNNNGC	7 cut(s)	35, 208, 413, 416, 634, 869, 985
BstNI	CCWGG	1 cut(s)	76
BstNSI	RCATGY	2 cut(s)	290, 988
BstPI	GGTNACC	1 cut(s)	439
BstSCI	CCNGG	5 cut(s)	74, 94, 443, 514, 713
BstSFI	CTRYAG	1 cut(s)	565
BstUI	CGCG	1 cut(s)	413
BstV1I	GCAGC	5 cut(s)	16, 370, 394, 566, 1036
BstV2I	GAAGAC	1 cut(s)	596
BstX2I	RGATCY	1 cut(s)	733
BstYI	RGATCY	1 cut(s)	733
BsuRI	GGCC	1 cut(s)	347
BtgI	CCRYGG	3 cut(s)	411, 865, 974
BtgZI	GCGATG	1 cut(s)	951
BtsCI	GGATG	3 cut(s)	56, 810, 970
BtsIMutI	CAGTG	3 cut(s)	63, 916, 937
BveI	ACCTGC	1 cut(s)	914
Cac8I	GCNNGC	6 cut(s)	528, 888, 904, 1130, 1134, 1138
CciI	TCATGA	2 cut(s)	480, 673
Cfr10I	RCCGGY	1 cut(s)	1074
Cfr13I	GGNCC	1 cut(s)	248
Cfr42I	CCGCGG	1 cut(s)	414
Csp6I	GTAC	4 cut(s)	600, 1056, 1078, 1144
CspAI	ACCGGT	1 cut(s)	1074
CspCI	CAANNNNNGTGG	2 cut(s)	847, 882
CviAII	CATG	7 cut(s)	287, 481, 674, 975, 985, 995, 1000
CviQI	GTAC	4 cut(s)	600, 1056, 1078, 1144
DdeI	CTNAG	3 cut(s)	33, 435, 720
DpnI	GATC	3 cut(s)	296, 735, 851
DpnII	GATC	3 cut(s)	294, 733, 849
EciI	GGCGGA	1 cut(s)	344
Eco130I	CCWWGG	2 cut(s)	974, 1059
Eco31I	GGTCTC	1 cut(s)	704
Eco47I	GGWCC	1 cut(s)	248
Eco91I	GGTNACC	1 cut(s)	439
EcoO65I	GGTNACC	1 cut(s)	439
EcoRII	CCWGG	1 cut(s)	74
EcoT14I	CCWWGG	2 cut(s)	974, 1059
EcoT22I	ATGCAT	1 cut(s)	288
ErhI	CCWWGG	2 cut(s)	974, 1059
FaeI	CATG	7 cut(s)	290, 484, 677, 978, 988, 998, 1003
FaqI	GGGAC	3 cut(s)	209, 228, 261
FatI	CATG	7 cut(s)	286, 480, 673, 974, 984, 994, 999
FbaI	TGATCA	1 cut(s)	294
Fnu4HI	GCNGC	8 cut(s)	30, 359, 408, 411, 414, 417, 555, 1050
FokI	GGATG	3 cut(s)	43, 817, 957
Fsp4HI	GCNGC	8 cut(s)	30, 359, 408, 411, 414, 417, 555, 1050
FspBI	CTAG	1 cut(s)	1133
GluI	GCNGC	8 cut(s)	30, 359, 408, 411, 414, 417, 555, 1050
GsuI	CTGGAG	1 cut(s)	58
HaeIII	GGCC	1 cut(s)	347
HapII	CCGG	6 cut(s)	95, 375, 444, 515, 714, 1075
Hin1II	CATG	7 cut(s)	290, 484, 677, 978, 988, 998, 1003
HincII	GTYRAC	1 cut(s)	775
HindII	GTYRAC	1 cut(s)	775
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	4 cut(s)	206, 486, 618, 843
HpaII	CCGG	6 cut(s)	95, 375, 444, 515, 714, 1075
HphI	GGTGA	2 cut(s)	39, 433
Hpy166II	GTNNAC	3 cut(s)	775, 856, 914
Hpy188I	TCNGA	3 cut(s)	294, 388, 753
Hpy188III	TCNNGA	8 cut(s)	481, 622, 674, 737, 835, 847, 853, 943
Hpy8I	GTNNAC	3 cut(s)	775, 856, 914
HpyAV	CCTTC	4 cut(s)	4, 541, 578, 832
HpyCH4III	ACNGT	9 cut(s)	67, 430, 457, 595, 604, 659, 911, 932, 1038
HpyCH4IV	ACGT	1 cut(s)	1042
HpyCH4V	TGCA	5 cut(s)	286, 358, 554, 637, 906
HpyF10VI	GCNNNNNNNGC	7 cut(s)	35, 208, 413, 416, 634, 869, 985
HpyF3I	CTNAG	3 cut(s)	33, 435, 720
HpySE526I	ACGT	1 cut(s)	1042
Hsp92II	CATG	7 cut(s)	290, 484, 677, 978, 988, 998, 1003
KpnI	GGTACC	1 cut(s)	1059
Ksp22I	TGATCA	1 cut(s)	294
KspI	CCGCGG	1 cut(s)	414
Kzo9I	GATC	3 cut(s)	294, 733, 849
LmnI	GCTCC	4 cut(s)	99, 447, 608, 964
Lsp1109I	GCAGC	5 cut(s)	16, 370, 394, 566, 1036
LweI	GCATC	5 cut(s)	98, 624, 682, 735, 889
MaeI	CTAG	1 cut(s)	1133
MaeII	ACGT	1 cut(s)	1042
MaeIII	GTNAC	6 cut(s)	229, 322, 439, 926, 980, 1038
MalI	GATC	3 cut(s)	296, 735, 851
MboI	GATC	3 cut(s)	294, 733, 849
MboII	GAAGA	5 cut(s)	118, 482, 601, 627, 1103
MfeI	CAATTG	1 cut(s)	1026
MflI	RGATCY	1 cut(s)	733
MluCI	AATT	8 cut(s)	253, 352, 378, 681, 822, 873, 1026, 1094
MlyI	GAGTC	1 cut(s)	852
MmeI	TCCRAC	1 cut(s)	586
Mph1103I	ATGCAT	1 cut(s)	288
MroXI	GAANNNNTTC	2 cut(s)	650, 1095
MseI	TTAA	3 cut(s)	339, 534, 684
MslI	CAYNNNNRTG	1 cut(s)	497
MspA1I	CMGCKG	1 cut(s)	413
MspI	CCGG	6 cut(s)	95, 375, 444, 515, 714, 1075
MspR9I	CCNGG	5 cut(s)	76, 96, 445, 516, 715
MunI	CAATTG	1 cut(s)	1026
MvaI	CCWGG	1 cut(s)	76
MvnI	CGCG	1 cut(s)	413
MwoI	GCNNNNNNNGC	7 cut(s)	35, 208, 413, 416, 634, 869, 985
NciI	CCSGG	4 cut(s)	96, 445, 516, 715
NcoI	CCATGG	1 cut(s)	974
NdeII	GATC	3 cut(s)	294, 733, 849
NheI	GCTAGC	1 cut(s)	1132
NlaIII	CATG	7 cut(s)	290, 484, 677, 978, 988, 998, 1003
NlaIV	GGNNCC	5 cut(s)	80, 249, 947, 1021, 1057
NmeAIII	GCCGAG	2 cut(s)	5, 721
NmuCI	GTSAC	2 cut(s)	322, 439
NsiI	ATGCAT	1 cut(s)	288
NspI	RCATGY	2 cut(s)	290, 988
PagI	TCATGA	2 cut(s)	480, 673
PdmI	GAANNNNTTC	2 cut(s)	650, 1095
PfeI	GAWTC	3 cut(s)	206, 486, 618
PinAI	ACCGGT	1 cut(s)	1074
PkrI	GCNGC	8 cut(s)	31, 360, 409, 412, 415, 418, 556, 1051
PleI	GAGTC	1 cut(s)	851
PpsI	GAGTC	1 cut(s)	851
Psp6I	CCWGG	1 cut(s)	74
PspEI	GGTNACC	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	74
PspN4I	GGNNCC	5 cut(s)	80, 249, 947, 1021, 1057
PspPI	GGNCC	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	733
RsaI	GTAC	4 cut(s)	601, 1057, 1079, 1145
RsaNI	GTAC	4 cut(s)	600, 1056, 1078, 1144
RseI	CAYNNNNRTG	1 cut(s)	497
SacII	CCGCGG	1 cut(s)	414
SaqAI	TTAA	3 cut(s)	339, 534, 684
SatI	GCNGC	8 cut(s)	30, 359, 408, 411, 414, 417, 555, 1050
Sau3AI	GATC	3 cut(s)	294, 733, 849
Sau96I	GGNCC	1 cut(s)	248
SchI	GAGTC	1 cut(s)	852
ScrFI	CCNGG	5 cut(s)	76, 96, 445, 516, 715
SfaNI	GCATC	5 cut(s)	98, 624, 682, 735, 889
SfcI	CTRYAG	1 cut(s)	565
Sfr303I	CCGCGG	1 cut(s)	414
SgrBI	CCGCGG	1 cut(s)	414
SinI	GGWCC	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	497
SmlI	CTYRAG	3 cut(s)	263, 401, 833
SmoI	CTYRAG	3 cut(s)	263, 401, 833
Sse9I	AATT	8 cut(s)	253, 352, 378, 681, 822, 873, 1026, 1094
SsiI	CCGC	5 cut(s)	329, 411, 413, 416, 467
SspMI	CTAG	1 cut(s)	1133
StyD4I	CCNGG	5 cut(s)	74, 94, 443, 514, 713
StyI	CCWWGG	2 cut(s)	974, 1059
TaaI	ACNGT	9 cut(s)	67, 430, 457, 595, 604, 659, 911, 932, 1038
TaiI	ACGT	1 cut(s)	1045
TaqI	TCGA	1 cut(s)	726
TasI	AATT	8 cut(s)	253, 352, 378, 681, 822, 873, 1026, 1094
TauI	GCSGC	3 cut(s)	413, 416, 419
TfiI	GAWTC	3 cut(s)	206, 486, 618
Tru1I	TTAA	3 cut(s)	339, 534, 684
Tru9I	TTAA	3 cut(s)	339, 534, 684
TscAI	CASTG	3 cut(s)	70, 916, 937
TseFI	GTSAC	2 cut(s)	322, 439
TseI	GCWGC	5 cut(s)	29, 358, 407, 554, 1049
Tsp45I	GTSAC	2 cut(s)	322, 439
TspDTI	ATGAA	2 cut(s)	23, 489
TspRI	CASTG	3 cut(s)	70, 916, 937
VpaK11BI	GGWCC	1 cut(s)	248
XapI	RAATTY	3 cut(s)	352, 822, 1094
XceI	RCATGY	2 cut(s)	290, 988
XmnI	GAANNNNTTC	2 cut(s)	650, 1095
XspI	CTAG	1 cut(s)	1133
Zsp2I	ATGCAT	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.