MD09G1034400.v1.1

Catalyzes the NAD( )-dependent oxidation of formate to carbon dioxide. Involved in the cell stress response

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
2110429 .. 2113468
3040 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1034400.v1.1.491

Sequence Viewer

Length: 1158 bp
ATGGCGATGAAGCGTGTGCTTGTTTCTGCAGTTCGAGGTCTTGCTTCATCAGGAAGCTCAGCATCTTCAACAACTTTCACCAGGCACCTCCATGCATCTGGTGGAAGCAAAAAGATAGTTGGGGTGTTTTACAAGGCCAAGGAGTATGCAGAATTGAACCCCAATTTTCTGGGTTGTGAGGAAAGGGCCTTGGGGATAAGGGACTGGCTGGAATCACAGGGCCACAAGTATATTGTCACTGATGACAAGGAAGGACCAAATTGTGAACTTGACAAACACATTGAAGATCTTCATGTTCTCATAACAACGCCCTTCCACCCGGCCTATGTCACGGCCGAAAGGATAAAAAAGGCCAAGAATTTGCAGCTGCTTCTAACAGCTGGAATTGGCTCTGATCACATTGATCTGAAAGCTGCTGCTGCTGCTGGATTAACCGTGGCAGAGGTCACGGGAAGCAATGTGGTTTCGGTTGCAGAAGATGAGCTCATGAGAATCCTCATTCTCGTCCGCAACTTCGTACCTGGGTATCAGCAGATTGTTAGTGGGGAATGGAATGTTGCAGGCATTGCCTACAGAGCTTATGATCTTGAAGGAAAGACGGTGGGGACGGTTGGTGCTGGACGTATTGGCAGGCTTTTGCTCCAAAGGTTGAAGCCTTTCAACTGCAATCTCCTCTATCATGATCGTGTCAAGATTGACTCCGAATTGGAGAAACAGACCGGGGCAAAGTTTGAGGAGGATCTGGATGCAATGCTTCCGAAATGTGACGTTATTGTTGTCAACACACCCCTAACTGAAAAAACAAGAGGACTGTTTGACAAAGAAAGAATTGCAAAATGTAAGAAGGGAGTTCTGATTGTTAACAATGCTCGTGGGGCAATCATGGACACGCAGGCTGTTGTCGACGCTTGCTCCAGCGGACACATTGCAGGTTACAGTGGTGATGTTTGGAATCCACAACCAGCTCCAAAAGACCATCCATGGCGTTACATGCCAAACCATGCTATGACCCCTCATATATCCGGTACCACAATTGATGCGCAGTTGCGTTATGCTGCTGGGACGAAGGATATGCTCGACAGGTACTTCAAGGGAGAAGAATTTCCGGCACAAAACTACATTGTCAAGGACGGTAAACTAGCAAGCCAATACCAGTAG

Protein Analysis

386

Amino Acids

42.3

Weight (kDa)

8.09

Isoelectric Point (pI)

31.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2-Hacid_dh PF00389 71 - 367 2.3e-15 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C PF02826 163 - 341 8.2e-52 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1041
Acc36I ACCTGC 1 cut(s) 920
Acc65I GGTACC 1 cut(s) 1025
AccB1I GGYRCC 2 cut(s) 84, 1025
AccI GTMKAC 1 cut(s) 903
AciI CCGC 2 cut(s) 508, 918
AclWI GGATC 1 cut(s) 747
AcoI YGGCCR 1 cut(s) 333
AcsI RAATTY 2 cut(s) 358, 1100
AfaI GTAC 3 cut(s) 519, 1027, 1085
AgsI TTSAA 7 cut(s) 69, 157, 284, 590, 652, 661, 1090
AjnI CCWGG 2 cut(s) 80, 520
AluBI AGCT 7 cut(s) 57, 367, 380, 413, 484, 578, 965
AluI AGCT 7 cut(s) 57, 367, 380, 413, 484, 578, 965
Alw21I GWGCWC 1 cut(s) 486
AlwI GGATC 1 cut(s) 747
AoxI GGCC 6 cut(s) 135, 186, 220, 321, 333, 351
ApeKI GCWGC 7 cut(s) 364, 367, 413, 416, 419, 422, 1055
ApoI RAATTY 2 cut(s) 358, 1100
Asp700I GAANNNNTTC 3 cut(s) 288, 656, 1101
Asp718I GGTACC 1 cut(s) 1025
AspLEI GCGC 1 cut(s) 1042
AspS9I GGNCC 3 cut(s) 186, 220, 254
AsuC2I CCSGG 2 cut(s) 320, 721
AsuHPI GGTGA 2 cut(s) 70, 953
AvaII GGWCC 1 cut(s) 254
BaeI ACNNNNGTAYC 2 cut(s) 509, 542
BanI GGYRCC 2 cut(s) 84, 1025
BanII GRGCYC 1 cut(s) 486
BauI CACGAG 1 cut(s) 870
Bbv12I GWGCWC 1 cut(s) 486
BbvI GCAGC 7 cut(s) 354, 376, 400, 403, 406, 409, 1042
BccI CCATC 1 cut(s) 984
BceAI ACGGC 1 cut(s) 348
BcgI CGANNNNNNTGC 2 cut(s) 1054, 1088
BciT130I CCWGG 2 cut(s) 82, 522
BclI TGATCA 1 cut(s) 394
BcnI CCSGG 2 cut(s) 320, 721
BfaI CTAG 1 cut(s) 1139
BfmI CTRYAG 2 cut(s) 27, 571
BfuAI ACCTGC 1 cut(s) 920
BglII AGATCT 1 cut(s) 286
BisI GCNGC 7 cut(s) 365, 368, 414, 417, 420, 423, 1056
BlpI GCTNAGC 1 cut(s) 58
BlsI GCNGC 7 cut(s) 366, 369, 415, 418, 421, 424, 1057
Bme1390I CCNGG 4 cut(s) 82, 320, 522, 721
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 3 cut(s) 186, 220, 254
BmiI GGNNCC 2 cut(s) 86, 1027
BmrFI CCNGG 4 cut(s) 82, 320, 522, 721
BmsI GCATC 4 cut(s) 71, 104, 736, 1027
BpmI CTGGAG 1 cut(s) 898
Bpu1102I GCTNAGC 1 cut(s) 58
BpuMI CCSGG 2 cut(s) 320, 721
BsaJI CCNNGG 6 cut(s) 138, 189, 435, 521, 720, 980
BsaWI WCCGGW 1 cut(s) 1022
BsaXI ACNNNNNCTCC 2 cut(s) 896, 926
Bse1I ACTGG 2 cut(s) 209, 1153
Bse3DI GCAATG 4 cut(s) 463, 564, 756, 924
BseBI CCWGG 2 cut(s) 82, 522
BseDI CCNNGG 6 cut(s) 138, 189, 435, 521, 720, 980
BseGI GGATG 2 cut(s) 751, 976
BseMI GCAATG 4 cut(s) 463, 564, 756, 924
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 2 cut(s) 209, 1153
BseRI GAGGAG 2 cut(s) 662, 749
BseX3I CGGCCG 1 cut(s) 333
BseXI GCAGC 7 cut(s) 354, 376, 400, 403, 406, 409, 1042
BseYI CCCAGC 1 cut(s) 1058
Bsh1285I CGRYCG 1 cut(s) 336
BshFI GGCC 6 cut(s) 137, 188, 222, 323, 335, 353
BshNI GGYRCC 2 cut(s) 84, 1025
BsiEI CGRYCG 1 cut(s) 336
BsiHKAI GWGCWC 1 cut(s) 486
BsiSI CCGG 4 cut(s) 320, 720, 1023, 1106
BslFI GGGAC 3 cut(s) 215, 619, 1075
BsmFI GGGAC 3 cut(s) 215, 619, 1075
BsnI GGCC 6 cut(s) 137, 188, 222, 323, 335, 353
Bsp1286I GDGCHC 1 cut(s) 486
Bsp143I GATC 6 cut(s) 286, 394, 403, 583, 682, 739
Bsp1720I GCTNAGC 1 cut(s) 58
Bsp19I CCATGG 1 cut(s) 980
BspACI CCGC 2 cut(s) 508, 918
BspANI GGCC 6 cut(s) 137, 188, 222, 323, 335, 353
BspCNI CTCAG 1 cut(s) 71
BspHI TCATGA 2 cut(s) 486, 679
BspLI GGNNCC 2 cut(s) 86, 1027
BspMAI CTGCAG 1 cut(s) 31
BspMI ACCTGC 1 cut(s) 920
BspPI GGATC 1 cut(s) 747
BspT107I GGYRCC 2 cut(s) 84, 1025
BsrDI GCAATG 4 cut(s) 463, 564, 756, 924
BsrI ACTGG 2 cut(s) 209, 1153
BssECI CCNNGG 6 cut(s) 138, 189, 435, 521, 720, 980
BssMI GATC 6 cut(s) 286, 394, 403, 583, 682, 739
BssSI CACGAG 1 cut(s) 870
BssT1I CCWWGG 3 cut(s) 138, 189, 980
Bst2BI CACGAG 1 cut(s) 870
Bst2UI CCWGG 2 cut(s) 82, 522
Bst4CI ACNGT 6 cut(s) 436, 601, 610, 813, 938, 1133
BstAPI GCANNNNNTGC 1 cut(s) 566
BstC8I GCNNGC 5 cut(s) 562, 632, 894, 910, 1144
BstDEI CTNAG 1 cut(s) 58
BstDSI CCRYGG 2 cut(s) 435, 980
BstF5I GGATG 2 cut(s) 751, 976
BstHHI GCGC 1 cut(s) 1042
BstKTI GATC 6 cut(s) 289, 397, 406, 586, 685, 742
BstMBI GATC 6 cut(s) 286, 394, 403, 583, 682, 739
BstMCI CGRYCG 1 cut(s) 336
BstMWI GCNNNNNNNGC 6 cut(s) 419, 422, 566, 575, 875, 991
BstNI CCWGG 2 cut(s) 82, 522
BstNSI RCATGY 1 cut(s) 994
BstSCI CCNGG 4 cut(s) 80, 318, 520, 719
BstSFI CTRYAG 2 cut(s) 27, 571
BstV1I GCAGC 7 cut(s) 354, 376, 400, 403, 406, 409, 1042
BstX2I RGATCY 2 cut(s) 286, 739
BstXI CCANNNNNNTGG 2 cut(s) 98, 169
BstYI RGATCY 2 cut(s) 286, 739
BstZI CGGCCG 1 cut(s) 333
BsuRI GGCC 6 cut(s) 137, 188, 222, 323, 335, 353
BtgI CCRYGG 2 cut(s) 435, 980
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 2 cut(s) 751, 976
BtsIMutI CAGTG 2 cut(s) 237, 943
BveI ACCTGC 1 cut(s) 920
Cac8I GCNNGC 5 cut(s) 562, 632, 894, 910, 1144
CciI TCATGA 2 cut(s) 486, 679
CfoI GCGC 1 cut(s) 1042
Cfr13I GGNCC 3 cut(s) 186, 220, 254
CseI GACGC 1 cut(s) 914
Csp6I GTAC 3 cut(s) 518, 1026, 1084
CspCI CAANNNNNGTGG 2 cut(s) 853, 888
CviAII CATG 8 cut(s) 92, 293, 487, 680, 883, 981, 991, 1001
CviQI GTAC 3 cut(s) 518, 1026, 1084
DdeI CTNAG 1 cut(s) 58
DpnI GATC 6 cut(s) 288, 396, 405, 585, 684, 741
DpnII GATC 6 cut(s) 286, 394, 403, 583, 682, 739
EaeI YGGCCR 1 cut(s) 333
EagI CGGCCG 1 cut(s) 333
Ecl136II GAGCTC 1 cut(s) 484
EclXI CGGCCG 1 cut(s) 333
Eco130I CCWWGG 3 cut(s) 138, 189, 980
Eco24I GRGCYC 1 cut(s) 486
Eco47I GGWCC 1 cut(s) 254
Eco52I CGGCCG 1 cut(s) 333
Eco53kI GAGCTC 1 cut(s) 484
EcoICRI GAGCTC 1 cut(s) 484
EcoO109I RGGNCCY 1 cut(s) 186
EcoRII CCWGG 2 cut(s) 80, 520
EcoT14I CCWWGG 3 cut(s) 138, 189, 980
EcoT22I ATGCAT 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 486
ErhI CCWWGG 3 cut(s) 138, 189, 980
FaeI CATG 8 cut(s) 95, 296, 490, 683, 886, 984, 994, 1004
FaqI GGGAC 3 cut(s) 215, 619, 1075
FatI CATG 8 cut(s) 91, 292, 486, 679, 882, 980, 990, 1000
FbaI TGATCA 1 cut(s) 394
FblI GTMKAC 1 cut(s) 903
Fnu4HI GCNGC 7 cut(s) 365, 368, 414, 417, 420, 423, 1056
FokI GGATG 2 cut(s) 758, 963
FriOI GRGCYC 1 cut(s) 486
Fsp4HI GCNGC 7 cut(s) 365, 368, 414, 417, 420, 423, 1056
FspBI CTAG 1 cut(s) 1139
FspI TGCGCA 1 cut(s) 1041
GlaI GCGC 1 cut(s) 1041
GluI GCNGC 7 cut(s) 365, 368, 414, 417, 420, 423, 1056
GsaI CCCAGC 1 cut(s) 1062
GsuI CTGGAG 1 cut(s) 898
HaeIII GGCC 6 cut(s) 137, 188, 222, 323, 335, 353
HapII CCGG 4 cut(s) 320, 720, 1023, 1106
HgaI GACGC 1 cut(s) 914
HhaI GCGC 1 cut(s) 1042
Hin1II CATG 8 cut(s) 95, 296, 490, 683, 886, 984, 994, 1004
Hin6I GCGC 1 cut(s) 1040
HinP1I GCGC 1 cut(s) 1040
HincII GTYRAC 3 cut(s) 781, 862, 904
HindII GTYRAC 3 cut(s) 781, 862, 904
HinfI GANTC 4 cut(s) 212, 492, 698, 952
HpaI GTTAAC 1 cut(s) 862
HpaII CCGG 4 cut(s) 320, 720, 1023, 1106
HphI GGTGA 2 cut(s) 70, 953
Hpy166II GTNNAC 5 cut(s) 266, 781, 862, 904, 1136
Hpy188I TCNGA 5 cut(s) 394, 408, 703, 759, 855
Hpy188III TCNNGA 6 cut(s) 51, 487, 587, 680, 691, 743
Hpy8I GTNNAC 5 cut(s) 266, 781, 862, 904, 1136
Hpy99I CGWCG 1 cut(s) 908
HpyAV CCTTC 5 cut(s) 245, 322, 584, 838, 1060
HpyCH4III ACNGT 6 cut(s) 436, 601, 610, 813, 938, 1133
HpyCH4IV ACGT 2 cut(s) 622, 768
HpyF10VI GCNNNNNNNGC 6 cut(s) 419, 422, 566, 575, 875, 991
HpyF3I CTNAG 1 cut(s) 58
HpySE526I ACGT 2 cut(s) 622, 768
Hsp92II CATG 8 cut(s) 95, 296, 490, 683, 886, 984, 994, 1004
HspAI GCGC 1 cut(s) 1040
KpnI GGTACC 1 cut(s) 1029
Ksp22I TGATCA 1 cut(s) 394
KspAI GTTAAC 1 cut(s) 862
Kzo9I GATC 6 cut(s) 286, 394, 403, 583, 682, 739
LmnI GCTCC 3 cut(s) 645, 917, 970
Lsp1109I GCAGC 7 cut(s) 354, 376, 400, 403, 406, 409, 1042
LweI GCATC 4 cut(s) 71, 104, 736, 1027
MaeI CTAG 1 cut(s) 1139
MaeII ACGT 2 cut(s) 622, 768
MaeIII GTNAC 6 cut(s) 235, 328, 445, 764, 932, 986
MalI GATC 6 cut(s) 288, 396, 405, 585, 684, 741
MboI GATC 6 cut(s) 286, 394, 403, 583, 682, 739
MboII GAAGA 5 cut(s) 57, 281, 296, 488, 1109
MfeI CAATTG 1 cut(s) 1032
MflI RGATCY 2 cut(s) 286, 739
MhlI GDGCHC 1 cut(s) 486
MluCI AATT 9 cut(s) 152, 163, 259, 358, 384, 704, 828, 1032, 1100
MlyI GAGTC 1 cut(s) 692
Mph1103I ATGCAT 1 cut(s) 97
MroXI GAANNNNTTC 3 cut(s) 288, 656, 1101
MseI TTAA 2 cut(s) 431, 861
MslI CAYNNNNRTG 2 cut(s) 90, 684
MspA1I CMGCKG 3 cut(s) 367, 380, 918
MspI CCGG 4 cut(s) 320, 720, 1023, 1106
MspR9I CCNGG 4 cut(s) 82, 320, 522, 721
MunI CAATTG 1 cut(s) 1032
MvaI CCWGG 2 cut(s) 82, 522
MwoI GCNNNNNNNGC 6 cut(s) 419, 422, 566, 575, 875, 991
NciI CCSGG 2 cut(s) 320, 721
NcoI CCATGG 1 cut(s) 980
NdeII GATC 6 cut(s) 286, 394, 403, 583, 682, 739
NlaIII CATG 8 cut(s) 95, 296, 490, 683, 886, 984, 994, 1004
NlaIV GGNNCC 2 cut(s) 86, 1027
NmuCI GTSAC 4 cut(s) 235, 328, 445, 764
NsbI TGCGCA 1 cut(s) 1041
NsiI ATGCAT 1 cut(s) 97
NspI RCATGY 1 cut(s) 994
PagI TCATGA 2 cut(s) 486, 679
PdmI GAANNNNTTC 3 cut(s) 288, 656, 1101
PfeI GAWTC 3 cut(s) 212, 492, 952
PkrI GCNGC 7 cut(s) 366, 369, 415, 418, 421, 424, 1057
PleI GAGTC 1 cut(s) 692
PpsI GAGTC 1 cut(s) 692
Psp124BI GAGCTC 1 cut(s) 486
Psp6I CCWGG 2 cut(s) 80, 520
PspFI CCCAGC 1 cut(s) 1058
PspGI CCWGG 2 cut(s) 80, 520
PspN4I GGNNCC 2 cut(s) 86, 1027
PspPI GGNCC 3 cut(s) 186, 220, 254
PstI CTGCAG 1 cut(s) 31
PsuI RGATCY 2 cut(s) 286, 739
PvuII CAGCTG 2 cut(s) 367, 380
RsaI GTAC 3 cut(s) 519, 1027, 1085
RsaNI GTAC 3 cut(s) 518, 1026, 1084
RseI CAYNNNNRTG 2 cut(s) 90, 684
SacI GAGCTC 1 cut(s) 486
SalI GTCGAC 1 cut(s) 902
SaqAI TTAA 2 cut(s) 431, 861
SatI GCNGC 7 cut(s) 365, 368, 414, 417, 420, 423, 1056
Sau3AI GATC 6 cut(s) 286, 394, 403, 583, 682, 739
Sau96I GGNCC 3 cut(s) 186, 220, 254
SchI GAGTC 1 cut(s) 692
ScrFI CCNGG 4 cut(s) 82, 320, 522, 721
SduI GDGCHC 1 cut(s) 486
SfaNI GCATC 4 cut(s) 71, 104, 736, 1027
SfcI CTRYAG 2 cut(s) 27, 571
SinI GGWCC 1 cut(s) 254
SmiMI CAYNNNNRTG 2 cut(s) 90, 684
Sse9I AATT 9 cut(s) 152, 163, 259, 358, 384, 704, 828, 1032, 1100
SsiI CCGC 2 cut(s) 508, 918
SspMI CTAG 1 cut(s) 1139
SstI GAGCTC 1 cut(s) 486
StyD4I CCNGG 4 cut(s) 80, 318, 520, 719
StyI CCWWGG 3 cut(s) 138, 189, 980
TaaI ACNGT 6 cut(s) 436, 601, 610, 813, 938, 1133
TaiI ACGT 2 cut(s) 625, 771
TaqI TCGA 3 cut(s) 34, 903, 1077
TasI AATT 9 cut(s) 152, 163, 259, 358, 384, 704, 828, 1032, 1100
TfiI GAWTC 3 cut(s) 212, 492, 952
Tru1I TTAA 2 cut(s) 431, 861
Tru9I TTAA 2 cut(s) 431, 861
TscAI CASTG 2 cut(s) 244, 943
TseFI GTSAC 4 cut(s) 235, 328, 445, 764
TseI GCWGC 7 cut(s) 364, 367, 413, 416, 419, 422, 1055
Tsp45I GTSAC 4 cut(s) 235, 328, 445, 764
TspDTI ATGAA 3 cut(s) 23, 36, 281
TspRI CASTG 2 cut(s) 244, 943
VpaK11BI GGWCC 1 cut(s) 254
XapI RAATTY 2 cut(s) 358, 1100
XceI RCATGY 1 cut(s) 994
XcmI CCANNNNNNNNNTGG 1 cut(s) 98
XmiI GTMKAC 1 cut(s) 903
XmnI GAANNNNTTC 3 cut(s) 288, 656, 1101
XspI CTAG 1 cut(s) 1139
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.