Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007870

Physical Location & Seq

Genomic Coordinates Reverse (-)

68147777 .. 68149211

Gene Structure 1435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0554200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCTTGCTCAAGCTCTCCAAGACCCACAAAAGTTCAAGAGTTCCATGTGTATGAGATCAACGAACGAGACCGTTCGAGCCCGGCTTACCTTAGTTTGAGCCAGAAACCTGCCCATTCGCTTGGAGATCTCGTGCCCTTCACTAACAAAATATACACCGGAGACCTTCAGAAACGATTGGGGATAACGGCGGGACTTTGCATTTTGATCGAAAGCAAGCCTGAAAAGAAGGGTGACCGATATGAGGCCATGTACAGCTTCTATTTTGGGGACTATGGTCACATTTCCGTCCAAGGACCGTACTTGACTTACGAGGACACGAGCTTGGCCGTGACCGGTGGTTCGGGGATATTCGAAGGAGTGTATGGACATGTCAAGCTGCACCAGATTGTGTTCCCCTTCAAAATCTTGTACACTTTTTACTTGAAGGGGATTGAGGACTTGCCTGAGGAGCTTACGGCTGTGAAGCTTGTGGAACCAAGCCCCAGTGTTCAGCCCAGCCCTGCTGCCAAGGCTTGTGAACCCCAAGCTACTGTCTCTAATTTCACTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009507 GO:0009536 GO:0009579 GO:0010035 GO:0010038 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00630 ko00680 ko01100 ko01120 ko01200 map00630 map00680 map01100 map01120 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

184

Amino Acids

20.38

Weight (kDa)

5.95

Isoelectric Point (pI)

59.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Allene_ox_cyc	PF06351	8 - 182	4.7e-95	Allene oxide cyclase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14780 AT5G14780 AT5G14780
fragaria_vesca	FvH4_6g50630
malus_domestica	MD09G1034400.v1.1 MD17G1034800.v1.1
prunus_persica	Prupe.3G284000_v2.0.a1 Prupe.3G284000_v2.0.a1 Prupe.3G284000_v2.0.a1 Prupe.3G284000_v2.0.a1
pyrus_communis	pycom111g02730 pycom17g03210
rosa_chinensis	RchiOBHm_Chr2g0171431
rosa_laevigata	RLG00000022013
rosa_multiflora	Rmu_sc0007646.1_g000006 Rmu_sc0027265.1_g000001 Rmu_sc0030144.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080660
rosa_rugosa	Rorug02G0554200
rosa_samantha	Rh2AG628500 Rh2CG607600 Rh2DG650000 Rh2DG656000
rosa_wichuraiana	Rw2G052060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	118
AciI	CCGC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	327
AcuI	CTGAAG	1 cut(s)	152
AfaI	GTAC	3 cut(s)	254, 302, 413
AfiI	CCNNNNNNNGG	1 cut(s)	244
AflIII	ACRYGT	1 cut(s)	370
AgeI	ACCGGT	1 cut(s)	335
AgsI	TTSAA	3 cut(s)	38, 403, 427
AluBI	AGCT	7 cut(s)	15, 258, 324, 379, 454, 469, 530
AluI	AGCT	7 cut(s)	15, 258, 324, 379, 454, 469, 530
Alw26I	GTCTC	3 cut(s)	63, 156, 541
AoxI	GGCC	2 cut(s)	246, 327
ApeKI	GCWGC	2 cut(s)	379, 506
ArsI	GACNNNNNNTTYG	2 cut(s)	325, 357
AsiGI	ACCGGT	1 cut(s)	335
AspS9I	GGNCC	1 cut(s)	296
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	245
AsuII	TTCGAA	1 cut(s)	354
AvaII	GGWCC	1 cut(s)	296
AxyI	CCTNAGG	1 cut(s)	447
BaeGI	GKGCMC	1 cut(s)	138
BanII	GRGCYC	1 cut(s)	83
BauI	CACGAG	2 cut(s)	131, 319
BbvI	GCAGC	2 cut(s)	366, 493
BceAI	ACGGC	3 cut(s)	204, 314, 474
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	3 cut(s)	63, 156, 541
BfaI	CTAG	1 cut(s)	553
BfuAI	ACCTGC	1 cut(s)	118
BglII	AGATCT	1 cut(s)	127
BisI	GCNGC	2 cut(s)	380, 507
BlsI	GCNGC	2 cut(s)	381, 508
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	1 cut(s)	83
BmrI	ACTGGG	1 cut(s)	480
BmuI	ACTGGG	1 cut(s)	480
BoxI	GACNNNNGTC	1 cut(s)	276
Bpu14I	TTCGAA	1 cut(s)	354
BpuMI	CCSGG	1 cut(s)	83
BsaI	GGTCTC	2 cut(s)	63, 156
BsaJI	CCNNGG	2 cut(s)	292, 510
BsaWI	WCCGGW	2 cut(s)	158, 335
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse118I	RCCGGY	1 cut(s)	335
Bse1I	ACTGG	1 cut(s)	486
Bse21I	CCTNAGG	1 cut(s)	447
BseDI	CCNNGG	2 cut(s)	292, 510
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	1 cut(s)	486
BseRI	GAGGAG	1 cut(s)	464
BseSI	GKGCMC	1 cut(s)	138
BseXI	GCAGC	2 cut(s)	366, 493
BseYI	CCCAGC	1 cut(s)	497
BsgI	GTGCAG	1 cut(s)	365
BshFI	GGCC	2 cut(s)	248, 329
BshTI	ACCGGT	1 cut(s)	335
BsiSI	CCGG	3 cut(s)	83, 159, 336
BslFI	GGGAC	2 cut(s)	207, 284
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	3 cut(s)	63, 156, 541
BsmFI	GGGAC	2 cut(s)	207, 284
BsnI	GGCC	2 cut(s)	248, 329
Bso31I	GGTCTC	2 cut(s)	63, 156
Bsp119I	TTCGAA	1 cut(s)	354
Bsp1286I	GDGCHC	2 cut(s)	83, 138
Bsp1407I	TGTACA	2 cut(s)	252, 411
Bsp143I	GATC	3 cut(s)	57, 127, 207
BspACI	CCGC	1 cut(s)	191
BspANI	GGCC	2 cut(s)	248, 329
BspCNI	CTCAG	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	477
BspMI	ACCTGC	1 cut(s)	118
BspT104I	TTCGAA	1 cut(s)	354
BspTNI	GGTCTC	2 cut(s)	63, 156
BsrFI	RCCGGY	1 cut(s)	335
BsrGI	TGTACA	2 cut(s)	252, 411
BsrI	ACTGG	1 cut(s)	486
BssAI	RCCGGY	1 cut(s)	335
BssECI	CCNNGG	2 cut(s)	292, 510
BssMI	GATC	3 cut(s)	57, 127, 207
BssSI	CACGAG	2 cut(s)	131, 319
BssT1I	CCWWGG	2 cut(s)	292, 510
Bst2BI	CACGAG	2 cut(s)	131, 319
Bst4CI	ACNGT	3 cut(s)	74, 300, 535
BstAUI	TGTACA	2 cut(s)	252, 411
BstBI	TTCGAA	1 cut(s)	354
BstC8I	GCNNGC	2 cut(s)	7, 218
BstDEI	CTNAG	2 cut(s)	92, 447
BstEII	GGTNACC	1 cut(s)	233
BstKTI	GATC	3 cut(s)	60, 130, 210
BstMAI	GTCTC	3 cut(s)	63, 156, 541
BstMBI	GATC	3 cut(s)	57, 127, 207
BstMWI	GCNNNNNNNGC	2 cut(s)	451, 512
BstNSI	RCATGY	1 cut(s)	374
BstPAI	GACNNNNGTC	1 cut(s)	276
BstPI	GGTNACC	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	81
BstSLI	GKGCMC	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	366, 493
BstX2I	RGATCY	1 cut(s)	127
BstXI	CCANNNNNNTGG	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	127
Bsu36I	CCTNAGG	1 cut(s)	447
BsuRI	GGCC	2 cut(s)	248, 329
BtsIMutI	CAGTG	1 cut(s)	493
BveI	ACCTGC	1 cut(s)	118
Cac8I	GCNNGC	2 cut(s)	7, 218
Cfr10I	RCCGGY	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	296
Csp6I	GTAC	3 cut(s)	253, 301, 412
CspAI	ACCGGT	1 cut(s)	335
CviAII	CATG	3 cut(s)	47, 250, 371
CviQI	GTAC	3 cut(s)	253, 301, 412
DdeI	CTNAG	2 cut(s)	92, 447
DpnI	GATC	3 cut(s)	59, 129, 209
DpnII	GATC	3 cut(s)	57, 127, 207
EaeI	YGGCCR	1 cut(s)	327
Eco130I	CCWWGG	2 cut(s)	292, 510
Eco24I	GRGCYC	1 cut(s)	83
Eco31I	GGTCTC	2 cut(s)	63, 156
Eco47I	GGWCC	1 cut(s)	296
Eco57I	CTGAAG	1 cut(s)	152
Eco81I	CCTNAGG	1 cut(s)	447
Eco91I	GGTNACC	1 cut(s)	233
EcoO65I	GGTNACC	1 cut(s)	233
EcoT14I	CCWWGG	2 cut(s)	292, 510
EcoT38I	GRGCYC	1 cut(s)	83
ErhI	CCWWGG	2 cut(s)	292, 510
FaeI	CATG	3 cut(s)	50, 253, 374
FaiI	YATR	8 cut(s)	48, 54, 154, 243, 251, 276, 366, 372
FaqI	GGGAC	2 cut(s)	207, 284
FatI	CATG	3 cut(s)	46, 249, 370
FauI	CCCGC	1 cut(s)	184
Fnu4HI	GCNGC	2 cut(s)	380, 507
FriOI	GRGCYC	1 cut(s)	83
Fsp4HI	GCNGC	2 cut(s)	380, 507
FspBI	CTAG	1 cut(s)	553
GluI	GCNGC	2 cut(s)	380, 507
GsaI	CCCAGC	1 cut(s)	501
HaeIII	GGCC	2 cut(s)	248, 329
HapII	CCGG	3 cut(s)	83, 159, 336
Hin1II	CATG	3 cut(s)	50, 253, 374
HindIII	AAGCTT	1 cut(s)	467
HpaII	CCGG	3 cut(s)	83, 159, 336
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	2 cut(s)	414, 521
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	1 cut(s)	38
Hpy8I	GTNNAC	2 cut(s)	414, 521
HpyAV	CCTTC	6 cut(s)	148, 176, 223, 350, 409, 421
HpyCH4III	ACNGT	3 cut(s)	74, 300, 535
HpyCH4V	TGCA	2 cut(s)	201, 382
HpyF10VI	GCNNNNNNNGC	2 cut(s)	451, 512
HpyF3I	CTNAG	2 cut(s)	92, 447
Hsp92II	CATG	3 cut(s)	50, 253, 374
Kzo9I	GATC	3 cut(s)	57, 127, 207
LmnI	GCTCC	1 cut(s)	451
Lsp1109I	GCAGC	2 cut(s)	366, 493
MaeI	CTAG	1 cut(s)	553
MaeIII	GTNAC	3 cut(s)	233, 278, 331
MalI	GATC	3 cut(s)	59, 129, 209
MboI	GATC	3 cut(s)	57, 127, 207
MflI	RGATCY	1 cut(s)	127
MhlI	GDGCHC	2 cut(s)	83, 138
MluCI	AATT	1 cut(s)	541
MnlI	CCTC	4 cut(s)	238, 307, 430, 442
MslI	CAYNNNNRTG	1 cut(s)	51
MspI	CCGG	3 cut(s)	83, 159, 336
MspR9I	CCNGG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	451, 512
NciI	CCSGG	1 cut(s)	83
NdeII	GATC	3 cut(s)	57, 127, 207
NlaIII	CATG	3 cut(s)	50, 253, 374
NlaIV	GGNNCC	1 cut(s)	477
NmuCI	GTSAC	3 cut(s)	233, 278, 331
NspI	RCATGY	1 cut(s)	374
NspV	TTCGAA	1 cut(s)	354
PciI	ACATGT	1 cut(s)	370
PinAI	ACCGGT	1 cut(s)	335
PkrI	GCNGC	2 cut(s)	381, 508
PscI	ACATGT	1 cut(s)	370
PshAI	GACNNNNGTC	1 cut(s)	276
PspEI	GGTNACC	1 cut(s)	233
PspFI	CCCAGC	1 cut(s)	497
PspN4I	GGNNCC	1 cut(s)	477
PspPI	GGNCC	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	127
RsaI	GTAC	3 cut(s)	254, 302, 413
RsaNI	GTAC	3 cut(s)	253, 301, 412
RseI	CAYNNNNRTG	1 cut(s)	51
SatI	GCNGC	2 cut(s)	380, 507
Sau3AI	GATC	3 cut(s)	57, 127, 207
Sau96I	GGNCC	1 cut(s)	296
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	2 cut(s)	83, 138
SfuI	TTCGAA	1 cut(s)	354
SinI	GGWCC	1 cut(s)	296
SmiMI	CAYNNNNRTG	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	1 cut(s)	541
SsiI	CCGC	1 cut(s)	191
SspMI	CTAG	1 cut(s)	553
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	2 cut(s)	292, 510
TaaI	ACNGT	3 cut(s)	74, 300, 535
TaqI	TCGA	3 cut(s)	77, 210, 354
TaqII	GACCGA	1 cut(s)	252
TasI	AATT	1 cut(s)	541
TatI	WGTACW	2 cut(s)	252, 411
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	3 cut(s)	233, 278, 331
TseI	GCWGC	2 cut(s)	379, 506
Tsp45I	GTSAC	3 cut(s)	233, 278, 331
TspGWI	ACGGA	1 cut(s)	277
TspRI	CASTG	1 cut(s)	493
VpaK11BI	GGWCC	1 cut(s)	296
XceI	RCATGY	1 cut(s)	374
XspI	CTAG	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.