Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007870

Physical Location & Seq

Genomic Coordinates Reverse (-)

85375477 .. 85378564

Gene Structure 3088 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG628500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGACACAGGCAACTCCGGGGAGCAAGAAGATTGTTGGGGTGTTTTATAAGGCTAATGAGTATGCCAAACTCAACCCCAATTTTTTGGGTTGTGAGGAAAACGCTTTGGGTATAAGGGAGTGGCTTGAATCACAGGGACACAAGTATATTGTTACTGATGACAAGGAGGGACCAAATTGTGAGCTTGAGAAACACATTGAGGATATGCATGTTCTGATCACAACCCCTTTCCACCCTGCCTATGTCACGGCGGAGAGGATTAAAAAGGCCAAGAATTTGCAGCTTCTTTTGACTGCCGGAATTGGCTCTGATCACATTGACCTCAAGGCTGCCGCGGCGGCTGGACTGACGGTTGCTGAGGTCACCGGAAGCAATACTGTTTCGGTTGCGGAAGATGAGCTGATGAGGATCCTCATTCTTGTGAGGAACTTTGTTCCGGGGTATCAGCAGGTTGTTAATGGGGAGTGGAAGGTTGCAGCCATTTCCCACAGGGCTTATGATTTGGAAGGAAAGACAGTTGGTACTGTTGGAGCTGGAAGAATTGGCAAGCTTTTGATGCAAAGATTGAGGCCTTTCAACTGTAATATCCTCTATCATGACAGAATTAAGGCTGATGCAGAATTTGAAAAAGAGACGGGGGCTAAGTTTGAAGAGGATCTTGATAAGATGCTTCCAAAATGTGATGTTGTTGTTGTCAACACCCCACTAACAGAAAAGACAAGGGGGATGTTTGATAAAGAGAGAATTTCCAAGCTCAAGAAGGGAGTCCTGATCGTGAACAATGCCCGTGGGGCAATCATGGACACGCAAGCAGTTGTCGATGCTTGCAACAGTGGACACATAGCAGGATACAGTGGCGATGTTTGGAACCCCCAACCAGCTCCCAAAGACCATCCATGGCGTTACATGCCAAACCATGCCATGACCCCTCATACATCTGGCACCACAATTGATGGACAGTTGCGTTATGCTGCTGGTACCAAGGACATGCTCGACAGGTACTTCAAAGGCGAAGACTTTCCTGCTCAAAACTACATTGTCAAGGAGGGCAAGCTAGCAAGCCAGTACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009507 GO:0009536 GO:0009579 GO:0010035 GO:0010038 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00630 ko00680 ko01100 ko01120 ko01200 map00630 map00680 map01100 map01120 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

357

Amino Acids

39.6

Weight (kDa)

6.84

Isoelectric Point (pI)

26.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh	PF00389	42 - 314	2e-15	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C	PF02826	135 - 313	9.7e-53	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14780 AT5G14780 AT5G14780
fragaria_vesca	FvH4_6g50630
malus_domestica	MD09G1034400.v1.1 MD17G1034800.v1.1
prunus_persica	Prupe.3G284000_v2.0.a1 Prupe.3G284000_v2.0.a1 Prupe.3G284000_v2.0.a1 Prupe.3G284000_v2.0.a1
pyrus_communis	pycom111g02730 pycom17g03210
rosa_chinensis	RchiOBHm_Chr2g0171431
rosa_laevigata	RLG00000022013
rosa_multiflora	Rmu_sc0007646.1_g000006 Rmu_sc0027265.1_g000001 Rmu_sc0030144.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080660
rosa_rugosa	Rorug02G0554200
rosa_samantha	Rh2AG628500 Rh2CG607600 Rh2DG650000 Rh2DG656000
rosa_wichuraiana	Rw2G052060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	48
Acc36I	ACCTGC	1 cut(s)	439
Acc65I	GGTACC	1 cut(s)	977
AccB1I	GGYRCC	2 cut(s)	941, 977
AccII	CGCG	1 cut(s)	335
AciI	CCGC	5 cut(s)	251, 333, 335, 338, 389
AclWI	GGATC	3 cut(s)	403, 416, 663
AcsI	RAATTY	3 cut(s)	274, 620, 744
AfaI	GTAC	4 cut(s)	523, 979, 1001, 1067
AgsI	TTSAA	5 cut(s)	128, 577, 626, 650, 1006
AluBI	AGCT	8 cut(s)	184, 283, 400, 533, 550, 754, 881, 1054
AluI	AGCT	8 cut(s)	184, 283, 400, 533, 550, 754, 881, 1054
Alw26I	GTCTC	1 cut(s)	626
AlwI	GGATC	3 cut(s)	403, 416, 663
AoxI	GGCC	2 cut(s)	267, 569
ApeKI	GCWGC	4 cut(s)	280, 329, 476, 971
ApoI	RAATTY	3 cut(s)	274, 620, 744
Asp700I	GAANNNNTTC	1 cut(s)	1017
Asp718I	GGTACC	1 cut(s)	977
AspS9I	GGNCC	1 cut(s)	170
AsuC2I	CCSGG	2 cut(s)	18, 438
AsuHPI	GGTGA	1 cut(s)	355
AsuNHI	GCTAGC	1 cut(s)	1054
AvaII	GGWCC	1 cut(s)	170
BamHI	GGATCC	1 cut(s)	408
BanI	GGYRCC	2 cut(s)	941, 977
BbsI	GAAGAC	1 cut(s)	1020
BbvCI	CCTCAGC	1 cut(s)	357
BbvI	GCAGC	4 cut(s)	292, 316, 488, 958
BccI	CCATC	2 cut(s)	900, 947
BceAI	ACGGC	1 cut(s)	264
BciVI	GTATCC	1 cut(s)	842
BclI	TGATCA	2 cut(s)	216, 310
BcnI	CCSGG	2 cut(s)	18, 438
BcoDI	GTCTC	1 cut(s)	626
BfaI	CTAG	1 cut(s)	1055
BfuAI	ACCTGC	1 cut(s)	439
BfuI	GTATCC	1 cut(s)	842
BglI	GCCNNNNNGGC	2 cut(s)	338, 791
BisI	GCNGC	7 cut(s)	281, 330, 333, 336, 339, 477, 972
BlsI	GCNGC	7 cut(s)	282, 331, 334, 337, 340, 478, 973
Bme1390I	CCNGG	2 cut(s)	18, 438
Bme18I	GGWCC	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	170
BmiI	GGNNCC	5 cut(s)	171, 410, 869, 943, 979
BmrFI	CCNGG	2 cut(s)	18, 438
BmsI	GCATC	4 cut(s)	546, 604, 657, 811
BmtI	GCTAGC	1 cut(s)	1058
BpiI	GAAGAC	1 cut(s)	1020
Bpu10I	CCTNAGC	1 cut(s)	357
BpuEI	CTTGAG	3 cut(s)	206, 308, 740
BpuMI	CCSGG	2 cut(s)	18, 438
BsaBI	GATNNNNATC	1 cut(s)	407
BsaJI	CCNNGG	6 cut(s)	17, 333, 437, 787, 896, 981
BsaWI	WCCGGW	1 cut(s)	365
Bse1I	ACTGG	2 cut(s)	1063, 1069
Bse8I	GATNNNNATC	1 cut(s)	407
BseDI	CCNNGG	6 cut(s)	17, 333, 437, 787, 896, 981
BseGI	GGATG	2 cut(s)	732, 892
BseJI	GATNNNNATC	1 cut(s)	407
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	2 cut(s)	1063, 1069
BseXI	GCAGC	4 cut(s)	292, 316, 488, 958
Bsh1236I	CGCG	1 cut(s)	335
BshFI	GGCC	2 cut(s)	269, 571
BshNI	GGYRCC	2 cut(s)	941, 977
BsiSI	CCGG	4 cut(s)	17, 297, 366, 437
BslFI	GGGAC	2 cut(s)	150, 183
BsmAI	GTCTC	1 cut(s)	626
BsmBI	CGTCTC	1 cut(s)	626
BsmFI	GGGAC	2 cut(s)	150, 183
BsnI	GGCC	2 cut(s)	269, 571
Bsp143I	GATC	5 cut(s)	216, 310, 408, 655, 771
Bsp19I	CCATGG	1 cut(s)	896
BspACI	CCGC	5 cut(s)	251, 333, 335, 338, 389
BspANI	GGCC	2 cut(s)	269, 571
BspCNI	CTCAG	1 cut(s)	349
BspFNI	CGCG	1 cut(s)	335
BspHI	TCATGA	1 cut(s)	595
BspLI	GGNNCC	5 cut(s)	171, 410, 869, 943, 979
BspMI	ACCTGC	1 cut(s)	439
BspOI	GCTAGC	1 cut(s)	1058
BspPI	GGATC	3 cut(s)	403, 416, 663
BspT107I	GGYRCC	2 cut(s)	941, 977
BsrI	ACTGG	2 cut(s)	1063, 1069
BssECI	CCNNGG	6 cut(s)	17, 333, 437, 787, 896, 981
BssMI	GATC	5 cut(s)	216, 310, 408, 655, 771
BssT1I	CCWWGG	2 cut(s)	896, 981
Bst4CI	ACNGT	8 cut(s)	352, 379, 517, 526, 581, 833, 854, 960
Bst6I	CTCTTC	1 cut(s)	645
BstC8I	GCNNGC	6 cut(s)	548, 810, 826, 1052, 1056, 1060
BstDEI	CTNAG	2 cut(s)	357, 642
BstDSI	CCRYGG	3 cut(s)	333, 787, 896
BstEII	GGTNACC	1 cut(s)	361
BstF5I	GGATG	2 cut(s)	732, 892
BstFNI	CGCG	1 cut(s)	335
BstKTI	GATC	5 cut(s)	219, 313, 411, 658, 774
BstMAI	GTCTC	1 cut(s)	626
BstMBI	GATC	5 cut(s)	216, 310, 408, 655, 771
BstMWI	GCNNNNNNNGC	5 cut(s)	335, 338, 556, 791, 907
BstNSI	RCATGY	3 cut(s)	212, 910, 991
BstPI	GGTNACC	1 cut(s)	361
BstSCI	CCNGG	2 cut(s)	16, 436
BstUI	CGCG	1 cut(s)	335
BstV1I	GCAGC	4 cut(s)	292, 316, 488, 958
BstV2I	GAAGAC	1 cut(s)	1020
BstX2I	RGATCY	2 cut(s)	408, 655
BstXI	CCANNNNNNTGG	1 cut(s)	85
BstYI	RGATCY	2 cut(s)	408, 655
BsuI	GTATCC	1 cut(s)	842
BsuRI	GGCC	2 cut(s)	269, 571
BtgI	CCRYGG	3 cut(s)	333, 787, 896
BtgZI	GCGATG	1 cut(s)	873
BtsCI	GGATG	2 cut(s)	732, 892
BtsIMutI	CAGTG	2 cut(s)	838, 859
BveI	ACCTGC	1 cut(s)	439
Cac8I	GCNNGC	6 cut(s)	548, 810, 826, 1052, 1056, 1060
CciI	TCATGA	1 cut(s)	595
Cfr13I	GGNCC	1 cut(s)	170
Cfr42I	CCGCGG	1 cut(s)	336
Csp6I	GTAC	4 cut(s)	522, 978, 1000, 1066
CspCI	CAANNNNNGTGG	2 cut(s)	769, 804
CviAII	CATG	8 cut(s)	209, 596, 799, 897, 907, 917, 922, 988
CviQI	GTAC	4 cut(s)	522, 978, 1000, 1066
DdeI	CTNAG	2 cut(s)	357, 642
DpnI	GATC	5 cut(s)	218, 312, 410, 657, 773
DpnII	GATC	5 cut(s)	216, 310, 408, 655, 771
Eam1104I	CTCTTC	1 cut(s)	645
EarI	CTCTTC	1 cut(s)	645
EciI	GGCGGA	1 cut(s)	266
Eco130I	CCWWGG	2 cut(s)	896, 981
Eco147I	AGGCCT	1 cut(s)	571
Eco47I	GGWCC	1 cut(s)	170
Eco91I	GGTNACC	1 cut(s)	361
EcoO65I	GGTNACC	1 cut(s)	361
EcoT14I	CCWWGG	2 cut(s)	896, 981
EcoT22I	ATGCAT	1 cut(s)	210
ErhI	CCWWGG	2 cut(s)	896, 981
Esp3I	CGTCTC	1 cut(s)	626
FaeI	CATG	8 cut(s)	212, 599, 802, 900, 910, 920, 925, 991
FalI	AAGNNNNNCTT	2 cut(s)	642, 674
FaqI	GGGAC	2 cut(s)	150, 183
FatI	CATG	8 cut(s)	208, 595, 798, 896, 906, 916, 921, 987
FbaI	TGATCA	2 cut(s)	216, 310
Fnu4HI	GCNGC	7 cut(s)	281, 330, 333, 336, 339, 477, 972
FokI	GGATG	2 cut(s)	739, 879
Fsp4HI	GCNGC	7 cut(s)	281, 330, 333, 336, 339, 477, 972
FspBI	CTAG	1 cut(s)	1055
GluI	GCNGC	7 cut(s)	281, 330, 333, 336, 339, 477, 972
HaeIII	GGCC	2 cut(s)	269, 571
HapII	CCGG	4 cut(s)	17, 297, 366, 437
Hin1II	CATG	8 cut(s)	212, 599, 802, 900, 910, 920, 925, 991
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HindIII	AAGCTT	1 cut(s)	548
HinfI	GANTC	2 cut(s)	128, 765
HpaII	CCGG	4 cut(s)	17, 297, 366, 437
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	3 cut(s)	697, 778, 836
Hpy188I	TCNGA	2 cut(s)	216, 310
Hpy188III	TCNNGA	5 cut(s)	596, 659, 757, 769, 775
Hpy8I	GTNNAC	3 cut(s)	697, 778, 836
HpyAV	CCTTC	3 cut(s)	463, 500, 754
HpyCH4III	ACNGT	8 cut(s)	352, 379, 517, 526, 581, 833, 854, 960
HpyCH4V	TGCA	6 cut(s)	208, 280, 476, 559, 617, 828
HpyF10VI	GCNNNNNNNGC	5 cut(s)	335, 338, 556, 791, 907
HpyF3I	CTNAG	2 cut(s)	357, 642
Hsp92II	CATG	8 cut(s)	212, 599, 802, 900, 910, 920, 925, 991
KpnI	GGTACC	1 cut(s)	981
Ksp22I	TGATCA	2 cut(s)	216, 310
KspI	CCGCGG	1 cut(s)	336
Kzo9I	GATC	5 cut(s)	216, 310, 408, 655, 771
LmnI	GCTCC	3 cut(s)	21, 530, 886
Lsp1109I	GCAGC	4 cut(s)	292, 316, 488, 958
LweI	GCATC	4 cut(s)	546, 604, 657, 811
MaeI	CTAG	1 cut(s)	1055
MaeIII	GTNAC	4 cut(s)	151, 244, 361, 902
MalI	GATC	5 cut(s)	218, 312, 410, 657, 773
MboI	GATC	5 cut(s)	216, 310, 408, 655, 771
MboII	GAAGA	5 cut(s)	40, 404, 549, 662, 1025
MfeI	CAATTG	1 cut(s)	948
MflI	RGATCY	2 cut(s)	408, 655
MluCI	AATT	9 cut(s)	79, 175, 274, 300, 540, 603, 620, 744, 948
MlyI	GAGTC	1 cut(s)	774
MmeI	TCCRAC	1 cut(s)	508
Mph1103I	ATGCAT	1 cut(s)	210
MroXI	GAANNNNTTC	1 cut(s)	1017
MseI	TTAA	3 cut(s)	261, 456, 606
MslI	CAYNNNNRTG	1 cut(s)	419
MspA1I	CMGCKG	1 cut(s)	335
MspI	CCGG	4 cut(s)	17, 297, 366, 437
MspR9I	CCNGG	2 cut(s)	18, 438
MunI	CAATTG	1 cut(s)	948
MvnI	CGCG	1 cut(s)	335
MwoI	GCNNNNNNNGC	5 cut(s)	335, 338, 556, 791, 907
NciI	CCSGG	2 cut(s)	18, 438
NcoI	CCATGG	1 cut(s)	896
NdeII	GATC	5 cut(s)	216, 310, 408, 655, 771
NheI	GCTAGC	1 cut(s)	1054
NlaIII	CATG	8 cut(s)	212, 599, 802, 900, 910, 920, 925, 991
NlaIV	GGNNCC	5 cut(s)	171, 410, 869, 943, 979
NmuCI	GTSAC	2 cut(s)	244, 361
NsiI	ATGCAT	1 cut(s)	210
NspI	RCATGY	3 cut(s)	212, 910, 991
PagI	TCATGA	1 cut(s)	595
PceI	AGGCCT	1 cut(s)	571
PdmI	GAANNNNTTC	1 cut(s)	1017
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	7 cut(s)	282, 331, 334, 337, 340, 478, 973
PleI	GAGTC	1 cut(s)	773
PpsI	GAGTC	1 cut(s)	773
PsiI	TTATAA	1 cut(s)	48
PspEI	GGTNACC	1 cut(s)	361
PspN4I	GGNNCC	5 cut(s)	171, 410, 869, 943, 979
PspPI	GGNCC	1 cut(s)	170
PsuI	RGATCY	2 cut(s)	408, 655
RsaI	GTAC	4 cut(s)	523, 979, 1001, 1067
RsaNI	GTAC	4 cut(s)	522, 978, 1000, 1066
RseI	CAYNNNNRTG	1 cut(s)	419
SacII	CCGCGG	1 cut(s)	336
SaqAI	TTAA	3 cut(s)	261, 456, 606
SatI	GCNGC	7 cut(s)	281, 330, 333, 336, 339, 477, 972
Sau3AI	GATC	5 cut(s)	216, 310, 408, 655, 771
Sau96I	GGNCC	1 cut(s)	170
SchI	GAGTC	1 cut(s)	774
ScrFI	CCNGG	2 cut(s)	18, 438
SfaNI	GCATC	4 cut(s)	546, 604, 657, 811
Sfr303I	CCGCGG	1 cut(s)	336
SgrBI	CCGCGG	1 cut(s)	336
SinI	GGWCC	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	419
SmlI	CTYRAG	3 cut(s)	185, 323, 755
SmoI	CTYRAG	3 cut(s)	185, 323, 755
Sse9I	AATT	9 cut(s)	79, 175, 274, 300, 540, 603, 620, 744, 948
SseBI	AGGCCT	1 cut(s)	571
SsiI	CCGC	5 cut(s)	251, 333, 335, 338, 389
SspMI	CTAG	1 cut(s)	1055
StuI	AGGCCT	1 cut(s)	571
StyD4I	CCNGG	2 cut(s)	16, 436
StyI	CCWWGG	2 cut(s)	896, 981
TaaI	ACNGT	8 cut(s)	352, 379, 517, 526, 581, 833, 854, 960
TaqI	TCGA	2 cut(s)	819, 993
TasI	AATT	9 cut(s)	79, 175, 274, 300, 540, 603, 620, 744, 948
TauI	GCSGC	3 cut(s)	335, 338, 341
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	3 cut(s)	261, 456, 606
Tru9I	TTAA	3 cut(s)	261, 456, 606
TscAI	CASTG	2 cut(s)	838, 859
TseFI	GTSAC	2 cut(s)	244, 361
TseI	GCWGC	4 cut(s)	280, 329, 476, 971
Tsp45I	GTSAC	2 cut(s)	244, 361
TspRI	CASTG	2 cut(s)	838, 859
VpaK11BI	GGWCC	1 cut(s)	170
XapI	RAATTY	3 cut(s)	274, 620, 744
XceI	RCATGY	3 cut(s)	212, 910, 991
XmnI	GAANNNNTTC	1 cut(s)	1017
XspI	CTAG	1 cut(s)	1055
Zsp2I	ATGCAT	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.