MD17G1034800.v1.1

Catalyzes the NAD( )-dependent oxidation of formate to carbon dioxide. Involved in the cell stress response

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
2511187 .. 2513803
2617 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1034800.v1.1.491

Sequence Viewer

Length: 1158 bp
ATGGCGAGTAAGGGTGTGATTGCTTCTGCAGTTCGAGCTCTTGCTTCATCAGGAAGCTCAGCATCATCAACAACTTTCACCAGGCACCTCCATGCATCTGGTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCAAATGAGTATGCAGAATTGAACCCCAATTTTCTGGGTTCTCAGGAGAGGGCTTTGGGGATAAGGGACTGGCTGGAATCACAGGGCCACGAGTATATTGTCACTGATGACAAGGAAGGACCAAATTGTGAACTAGAGAAACACATTGAAGATCTTCATGTTCTCATAACAACCCCGTTCCACCCTGCCTATGTCACGGCTGAACGGATCAAAAAGGCCAAGAATTTGGAACTGCTTCTAACCGCTGGAATTGGCTCTGATCACATTGATCTGAAAGCTGCAGCTGCTGCTGGTTTGACAGTGGCAGAGGTCACGGGAAGCAATGTGGTTTCGGTTGCAGAAGACGAGCTCATGAGAATCCTCATTCTCGTCCGCAACTTCGTACCTGGGTATCAGCAGATTGTAACCGGGGAATGGAACGTTGCAGGTATTGCCCACAGAGCTTATGATCTCGAAGGAAAGACGGTGGGGACGGTTGGTGCTGGACGTATTGGTAGGCTTTTGCTCCAAAGGTTGAAGCCCTTCAACTGCAATCTTCTCTATCATGATCGCGTCAAGATTGACCCCGAATTGGAGCAACAGACTGGGGCAAAGTTCGAGGAGGATCTGGATGCAATGCTTCCGAAATGTGATGTTATCGTTGTCAACACACCACTTACTGAAAAAACAAGAGGACTGTTTGACAAAGAAAGAATTGCGAAGTGTAAGAAGGGAGTCCTGATCGTTAACAATGCTCGTGGAGCAATCATGGACACGCAGGCTGTTGTCGATGCTTGCTCCAGCGGACACATTGCAGGTTACAGTGGTGATGTTTGGAACCCACAACCAGCTCCAAAAGACCATCCATGGCGATACATGCCGAACCATGCTATGACCCCTCATATATCCGGTACCACAATTGACGCACAGTTGCGTTATGCTGCTGGGACGAAGGATATGCTTGACAGGTACTTCAAGGGAGAAGAATTTCCAGCACAAAACTACATTGTCAAGGACGGTAAACTAGCAAGCCAGTACCAGTAG

Protein Analysis

386

Amino Acids

42.12

Weight (kDa)

6.51

Isoelectric Point (pI)

28.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2-Hacid_dh PF00389 70 - 367 9.8e-16 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C PF02826 163 - 341 2.7e-51 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 551, 920
Acc65I GGTACC 1 cut(s) 1025
AccB1I GGYRCC 2 cut(s) 84, 1025
AccII CGCG 1 cut(s) 687
AciI CCGC 3 cut(s) 378, 508, 918
AclI AACGTT 1 cut(s) 555
AclWI GGATC 2 cut(s) 350, 747
AcsI RAATTY 2 cut(s) 358, 1100
AfaI GTAC 4 cut(s) 519, 1027, 1085, 1151
AfiI CCNNNNNNNGG 2 cut(s) 549, 706
AgsI TTSAA 5 cut(s) 157, 284, 652, 661, 1090
AjnI CCWGG 2 cut(s) 80, 520
AluBI AGCT 7 cut(s) 38, 57, 413, 419, 484, 578, 965
AluI AGCT 7 cut(s) 38, 57, 413, 419, 484, 578, 965
Alw21I GWGCWC 2 cut(s) 40, 486
AlwI GGATC 2 cut(s) 350, 747
AlwNI CAGNNNCTG 1 cut(s) 422
AoxI GGCC 2 cut(s) 220, 351
ApeKI GCWGC 5 cut(s) 413, 416, 419, 422, 1055
ApoI RAATTY 2 cut(s) 358, 1100
Asp700I GAANNNNTTC 4 cut(s) 288, 369, 656, 1101
Asp718I GGTACC 1 cut(s) 1025
AspS9I GGNCC 2 cut(s) 220, 254
AsuC2I CCSGG 1 cut(s) 544
AsuHPI GGTGA 2 cut(s) 70, 953
AvaII GGWCC 1 cut(s) 254
BaeI ACNNNNGTAYC 2 cut(s) 509, 542
BanI GGYRCC 2 cut(s) 84, 1025
BanII GRGCYC 2 cut(s) 40, 486
BauI CACGAG 2 cut(s) 224, 870
BbsI GAAGAC 1 cut(s) 483
Bbv12I GWGCWC 2 cut(s) 40, 486
BbvI GCAGC 5 cut(s) 400, 406, 409, 428, 1042
BccI CCATC 1 cut(s) 984
BceAI ACGGC 1 cut(s) 348
BcgI CGANNNNNNTGC 2 cut(s) 1054, 1088
BciT130I CCWGG 2 cut(s) 82, 522
BclI TGATCA 1 cut(s) 394
BcnI CCSGG 1 cut(s) 544
BfaI CTAG 2 cut(s) 269, 1139
BfmI CTRYAG 2 cut(s) 27, 414
BfuAI ACCTGC 2 cut(s) 551, 920
BglII AGATCT 1 cut(s) 286
BisI GCNGC 5 cut(s) 414, 417, 420, 423, 1056
BlpI GCTNAGC 1 cut(s) 58
BlsI GCNGC 5 cut(s) 415, 418, 421, 424, 1057
Bme1390I CCNGG 3 cut(s) 82, 522, 544
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 2 cut(s) 220, 254
BmiI GGNNCC 3 cut(s) 86, 953, 1027
BmrFI CCNGG 3 cut(s) 82, 522, 544
BmrI ACTGGG 1 cut(s) 729
BmsI GCATC 4 cut(s) 71, 104, 736, 895
BmuI ACTGGG 1 cut(s) 729
BpiI GAAGAC 1 cut(s) 483
BpmI CTGGAG 1 cut(s) 898
Bpu1102I GCTNAGC 1 cut(s) 58
BpuMI CCSGG 1 cut(s) 544
BsaJI CCNNGG 3 cut(s) 521, 543, 980
BsaWI WCCGGW 1 cut(s) 1022
Bsc4I CCNNNNNNNGG 2 cut(s) 549, 706
Bse1I ACTGG 4 cut(s) 209, 724, 1147, 1153
Bse3DI GCAATG 3 cut(s) 463, 756, 924
BseBI CCWGG 2 cut(s) 82, 522
BseDI CCNNGG 3 cut(s) 521, 543, 980
BseGI GGATG 2 cut(s) 751, 976
BseLI CCNNNNNNNGG 2 cut(s) 549, 706
BseMI GCAATG 3 cut(s) 463, 756, 924
BseMII CTCAG 2 cut(s) 72, 191
BseNI ACTGG 4 cut(s) 209, 724, 1147, 1153
BseRI GAGGAG 1 cut(s) 749
BseXI GCAGC 5 cut(s) 400, 406, 409, 428, 1042
BseYI CCCAGC 1 cut(s) 1058
Bsh1236I CGCG 1 cut(s) 687
BshFI GGCC 2 cut(s) 222, 353
BshNI GGYRCC 2 cut(s) 84, 1025
BsiHKAI GWGCWC 2 cut(s) 40, 486
BsiSI CCGG 2 cut(s) 543, 1023
BslFI GGGAC 3 cut(s) 215, 619, 1075
BslI CCNNNNNNNGG 2 cut(s) 549, 706
BsmFI GGGAC 3 cut(s) 215, 619, 1075
BsnI GGCC 2 cut(s) 222, 353
Bsp1286I GDGCHC 2 cut(s) 40, 486
Bsp143I GATC 8 cut(s) 286, 342, 394, 403, 583, 682, 739, 855
Bsp1720I GCTNAGC 1 cut(s) 58
Bsp19I CCATGG 1 cut(s) 980
BspACI CCGC 3 cut(s) 378, 508, 918
BspANI GGCC 2 cut(s) 222, 353
BspCNI CTCAG 2 cut(s) 71, 190
BspFNI CGCG 1 cut(s) 687
BspHI TCATGA 2 cut(s) 486, 679
BspLI GGNNCC 3 cut(s) 86, 953, 1027
BspMAI CTGCAG 2 cut(s) 31, 418
BspMI ACCTGC 2 cut(s) 551, 920
BspPI GGATC 2 cut(s) 350, 747
BspT107I GGYRCC 2 cut(s) 84, 1025
BsrDI GCAATG 3 cut(s) 463, 756, 924
BsrI ACTGG 4 cut(s) 209, 724, 1147, 1153
BssECI CCNNGG 3 cut(s) 521, 543, 980
BssMI GATC 8 cut(s) 286, 342, 394, 403, 583, 682, 739, 855
BssSI CACGAG 2 cut(s) 224, 870
BssT1I CCWWGG 1 cut(s) 980
Bst2BI CACGAG 2 cut(s) 224, 870
Bst2UI CCWGG 2 cut(s) 82, 522
Bst4CI ACNGT 7 cut(s) 436, 601, 610, 813, 938, 1044, 1133
BstAPI GCANNNNNTGC 2 cut(s) 422, 566
BstC8I GCNNGC 3 cut(s) 894, 910, 1144
BstDEI CTNAG 2 cut(s) 58, 177
BstDSI CCRYGG 1 cut(s) 980
BstF5I GGATG 2 cut(s) 751, 976
BstFNI CGCG 1 cut(s) 687
BstKTI GATC 8 cut(s) 289, 345, 397, 406, 586, 685, 742, 858
BstMBI GATC 8 cut(s) 286, 342, 394, 403, 583, 682, 739, 855
BstMWI GCNNNNNNNGC 7 cut(s) 35, 419, 422, 566, 575, 875, 991
BstNI CCWGG 2 cut(s) 82, 522
BstNSI RCATGY 1 cut(s) 994
BstSCI CCNGG 3 cut(s) 80, 520, 542
BstSFI CTRYAG 2 cut(s) 27, 414
BstUI CGCG 1 cut(s) 687
BstV1I GCAGC 5 cut(s) 400, 406, 409, 428, 1042
BstV2I GAAGAC 1 cut(s) 483
BstX2I RGATCY 2 cut(s) 286, 739
BstXI CCANNNNNNTGG 3 cut(s) 98, 169, 361
BstYI RGATCY 2 cut(s) 286, 739
BsuRI GGCC 2 cut(s) 222, 353
BtgI CCRYGG 1 cut(s) 980
BtsCI GGATG 2 cut(s) 751, 976
BtsIMutI CAGTG 3 cut(s) 237, 441, 943
BveI ACCTGC 2 cut(s) 551, 920
Cac8I GCNNGC 3 cut(s) 894, 910, 1144
CaiI CAGNNNCTG 1 cut(s) 422
CciI TCATGA 2 cut(s) 486, 679
Cfr13I GGNCC 2 cut(s) 220, 254
CseI GACGC 2 cut(s) 676, 1046
Csp6I GTAC 4 cut(s) 518, 1026, 1084, 1150
CspCI CAANNNNNGTGG 2 cut(s) 853, 888
CviAII CATG 8 cut(s) 92, 293, 487, 680, 883, 981, 991, 1001
CviQI GTAC 4 cut(s) 518, 1026, 1084, 1150
DdeI CTNAG 2 cut(s) 58, 177
DpnI GATC 8 cut(s) 288, 344, 396, 405, 585, 684, 741, 857
DpnII GATC 8 cut(s) 286, 342, 394, 403, 583, 682, 739, 855
Ecl136II GAGCTC 2 cut(s) 38, 484
Eco130I CCWWGG 1 cut(s) 980
Eco24I GRGCYC 2 cut(s) 40, 486
Eco47I GGWCC 1 cut(s) 254
Eco53kI GAGCTC 2 cut(s) 38, 484
EcoICRI GAGCTC 2 cut(s) 38, 484
EcoRII CCWGG 2 cut(s) 80, 520
EcoT14I CCWWGG 1 cut(s) 980
EcoT22I ATGCAT 1 cut(s) 97
EcoT38I GRGCYC 2 cut(s) 40, 486
ErhI CCWWGG 1 cut(s) 980
FaeI CATG 8 cut(s) 95, 296, 490, 683, 886, 984, 994, 1004
FaqI GGGAC 3 cut(s) 215, 619, 1075
FatI CATG 8 cut(s) 91, 292, 486, 679, 882, 980, 990, 1000
FbaI TGATCA 1 cut(s) 394
Fnu4HI GCNGC 5 cut(s) 414, 417, 420, 423, 1056
FokI GGATG 2 cut(s) 758, 963
FriOI GRGCYC 2 cut(s) 40, 486
Fsp4HI GCNGC 5 cut(s) 414, 417, 420, 423, 1056
FspBI CTAG 2 cut(s) 269, 1139
GluI GCNGC 5 cut(s) 414, 417, 420, 423, 1056
GsaI CCCAGC 1 cut(s) 1062
GsuI CTGGAG 1 cut(s) 898
HaeIII GGCC 2 cut(s) 222, 353
HapII CCGG 2 cut(s) 543, 1023
HgaI GACGC 2 cut(s) 676, 1046
Hin1II CATG 8 cut(s) 95, 296, 490, 683, 886, 984, 994, 1004
HincII GTYRAC 2 cut(s) 781, 862
HindII GTYRAC 2 cut(s) 781, 862
HinfI GANTC 3 cut(s) 212, 492, 849
HpaI GTTAAC 1 cut(s) 862
HpaII CCGG 2 cut(s) 543, 1023
HphI GGTGA 2 cut(s) 70, 953
Hpy166II GTNNAC 4 cut(s) 266, 781, 862, 1136
Hpy188I TCNGA 3 cut(s) 394, 408, 759
Hpy188III TCNNGA 8 cut(s) 51, 179, 487, 587, 680, 691, 743, 853
Hpy8I GTNNAC 4 cut(s) 266, 781, 862, 1136
HpyAV CCTTC 5 cut(s) 245, 584, 667, 838, 1060
HpyCH4III ACNGT 7 cut(s) 436, 601, 610, 813, 938, 1044, 1133
HpyCH4IV ACGT 2 cut(s) 555, 622
HpyCH4V TGCA 9 cut(s) 29, 95, 149, 416, 473, 560, 666, 749, 929
HpyF10VI GCNNNNNNNGC 7 cut(s) 35, 419, 422, 566, 575, 875, 991
HpyF3I CTNAG 2 cut(s) 58, 177
HpySE526I ACGT 2 cut(s) 555, 622
Hsp92II CATG 8 cut(s) 95, 296, 490, 683, 886, 984, 994, 1004
KpnI GGTACC 1 cut(s) 1029
Ksp22I TGATCA 1 cut(s) 394
KspAI GTTAAC 1 cut(s) 862
Kzo9I GATC 8 cut(s) 286, 342, 394, 403, 583, 682, 739, 855
LmnI GCTCC 5 cut(s) 645, 709, 875, 917, 970
Lsp1109I GCAGC 5 cut(s) 400, 406, 409, 428, 1042
LweI GCATC 4 cut(s) 71, 104, 736, 895
MaeI CTAG 2 cut(s) 269, 1139
MaeII ACGT 2 cut(s) 555, 622
MaeIII GTNAC 5 cut(s) 235, 328, 445, 538, 932
MalI GATC 8 cut(s) 288, 344, 396, 405, 585, 684, 741, 857
MboI GATC 8 cut(s) 286, 342, 394, 403, 583, 682, 739, 855
MboII GAAGA 5 cut(s) 281, 296, 488, 662, 1109
MfeI CAATTG 1 cut(s) 1032
MflI RGATCY 2 cut(s) 286, 739
MhlI GDGCHC 2 cut(s) 40, 486
MluCI AATT 9 cut(s) 152, 163, 259, 358, 384, 704, 828, 1032, 1100
MlyI GAGTC 1 cut(s) 858
MnlI CCTC 8 cut(s) 98, 177, 436, 506, 727, 730, 800, 1023
Mph1103I ATGCAT 1 cut(s) 97
MroXI GAANNNNTTC 4 cut(s) 288, 369, 656, 1101
MseI TTAA 1 cut(s) 861
MslI CAYNNNNRTG 1 cut(s) 90
MspA1I CMGCKG 3 cut(s) 380, 419, 918
MspI CCGG 2 cut(s) 543, 1023
MspR9I CCNGG 3 cut(s) 82, 522, 544
MunI CAATTG 1 cut(s) 1032
MvaI CCWGG 2 cut(s) 82, 522
MvnI CGCG 1 cut(s) 687
MwoI GCNNNNNNNGC 7 cut(s) 35, 419, 422, 566, 575, 875, 991
NciI CCSGG 1 cut(s) 544
NcoI CCATGG 1 cut(s) 980
NdeII GATC 8 cut(s) 286, 342, 394, 403, 583, 682, 739, 855
NlaIII CATG 8 cut(s) 95, 296, 490, 683, 886, 984, 994, 1004
NlaIV GGNNCC 3 cut(s) 86, 953, 1027
NmuCI GTSAC 3 cut(s) 235, 328, 445
NsiI ATGCAT 1 cut(s) 97
NspI RCATGY 1 cut(s) 994
PagI TCATGA 2 cut(s) 486, 679
PdmI GAANNNNTTC 4 cut(s) 288, 369, 656, 1101
PfeI GAWTC 2 cut(s) 212, 492
PkrI GCNGC 5 cut(s) 415, 418, 421, 424, 1057
PleI GAGTC 1 cut(s) 857
PpsI GAGTC 1 cut(s) 857
Psp124BI GAGCTC 2 cut(s) 40, 486
Psp1406I AACGTT 1 cut(s) 555
Psp6I CCWGG 2 cut(s) 80, 520
PspFI CCCAGC 1 cut(s) 1058
PspGI CCWGG 2 cut(s) 80, 520
PspN4I GGNNCC 3 cut(s) 86, 953, 1027
PspPI GGNCC 2 cut(s) 220, 254
PstI CTGCAG 2 cut(s) 31, 418
PstNI CAGNNNCTG 1 cut(s) 422
PsuI RGATCY 2 cut(s) 286, 739
PvuII CAGCTG 1 cut(s) 419
RsaI GTAC 4 cut(s) 519, 1027, 1085, 1151
RsaNI GTAC 4 cut(s) 518, 1026, 1084, 1150
RseI CAYNNNNRTG 1 cut(s) 90
SacI GAGCTC 2 cut(s) 40, 486
SaqAI TTAA 1 cut(s) 861
SatI GCNGC 5 cut(s) 414, 417, 420, 423, 1056
Sau3AI GATC 8 cut(s) 286, 342, 394, 403, 583, 682, 739, 855
Sau96I GGNCC 2 cut(s) 220, 254
SchI GAGTC 1 cut(s) 858
ScrFI CCNGG 3 cut(s) 82, 522, 544
SduI GDGCHC 2 cut(s) 40, 486
SfaNI GCATC 4 cut(s) 71, 104, 736, 895
SfcI CTRYAG 2 cut(s) 27, 414
SinI GGWCC 1 cut(s) 254
SmiMI CAYNNNNRTG 1 cut(s) 90
Sse9I AATT 9 cut(s) 152, 163, 259, 358, 384, 704, 828, 1032, 1100
SsiI CCGC 3 cut(s) 378, 508, 918
SspMI CTAG 2 cut(s) 269, 1139
SstI GAGCTC 2 cut(s) 40, 486
StyD4I CCNGG 3 cut(s) 80, 520, 542
StyI CCWWGG 1 cut(s) 980
TaaI ACNGT 7 cut(s) 436, 601, 610, 813, 938, 1044, 1133
TaiI ACGT 2 cut(s) 558, 625
TaqI TCGA 4 cut(s) 34, 588, 732, 903
TasI AATT 9 cut(s) 152, 163, 259, 358, 384, 704, 828, 1032, 1100
TfiI GAWTC 2 cut(s) 212, 492
Tru1I TTAA 1 cut(s) 861
Tru9I TTAA 1 cut(s) 861
TscAI CASTG 3 cut(s) 244, 441, 943
TseFI GTSAC 3 cut(s) 235, 328, 445
TseI GCWGC 5 cut(s) 413, 416, 419, 422, 1055
Tsp45I GTSAC 3 cut(s) 235, 328, 445
TspDTI ATGAA 2 cut(s) 36, 281
TspGWI ACGGA 1 cut(s) 355
TspRI CASTG 3 cut(s) 244, 441, 943
VpaK11BI GGWCC 1 cut(s) 254
XapI RAATTY 2 cut(s) 358, 1100
XceI RCATGY 1 cut(s) 994
XcmI CCANNNNNNNNNTGG 1 cut(s) 98
XmnI GAANNNNTTC 4 cut(s) 288, 369, 656, 1101
XspI CTAG 2 cut(s) 269, 1139
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.