AT5G14980

Caffeoylshikimate esterase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014337
Physical Location & Seq
Forward (+)
4849600 .. 4850583
984 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G14980.1

Sequence Viewer

Length: 984 bp
ATGGGACTCCATCCAGTCTCAGAGGCCAACGCCTCAAGCCCCTTTGGTTCCCTCTCTGCGGCTGAATTCTACTCCCGCCACTCCGTCACCCACTCCTCCGCTTACGTCACCAACCCCACCGGTCTCAAACTCTTTACCCAATGGTGGACTCCACTCAACCGTCCACCACTCGGCCTCATTGCTGTTGTCCACGGCTTCACCGGCGAATCCAGCTGGTTCCTCCAACTAACATCAGTCCTCTTCGCAAAATCCGGATACCTCACTTGCGCCATCGACCACCAAGGCCACGGCTTCTCAGACGGTTTGACCGCTCACATCCCAAACATCAACCTCATTGTTGACGACTGCATTTCCTTCTTTGACGACTTCCGTAAACGTCACGCTTCCTCCTTTCTCCCGGCCTTCCTCTACTCTGAATCCCTTGGTGGCGCAATCGCTCTGTACATTACTCTCCGCCAGAAACACCAATGGAACGGTCTTATCCTCAGCGGTGCAATGTGCTCCATCAGTCACAAATTTAAACCTCCATGGCCGTTACAACACCTCTTAACCCTAGCTGCTACTCTCATCCCCACCTGGCGCGTCGTCCCAACTCGCGGCTCCATCGCCGGCGTCTCTTTCAAGGAGCCATGGAAACGGAAACTCGCCTATGCTAACCCAAACAGAACCGTCGGTAAACCACGAGCAGCCACGGCCTATGAGCTCGTACGAGTCTGCGAGGATCTTCAAAACAGGTTTGAAGAAGTTGAAGTCCCGTTGATGATTGTGCACGGTAGAGACGACGTCGTCTGCGATCCAGCCTCCGTCGAAGAGCTTTACCGGAGATGCAGTAGCAGAGACAAGACGATAAAGATTTATCCAGGGATGTGGCATCAGCTGATTGGAGAGTCAGAGGAGAACGTCGACTTGGTGTTCGGTGATGTTTTGGATTGGATTAAGACACGATCTGAAATCTCCACCATTCATGGTGGTACCAAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

327

Amino Acids

36.44

Weight (kDa)

7.72

Isoelectric Point (pI)

36.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 55 - 298 2.3e-63 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 61 - 177 1.7e-06 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 62 - 291 4.4e-08 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14980 AT5G19290
fragaria_vesca FvH4_7g19610
malus_domestica MD01G1108700.v1.1 MD07G1174800.v1.1
prunus_persica Prupe.2G213900_v2.0.a1
pyrus_communis pycom01g13570 pycom07g16920
rosa_chinensis RchiOBHm_Chr1g0363421
rosa_laevigata RLG00000027569
rosa_multiflora Rmu_sc0000339.1_g000010 Rmu_sc0004458.1_g000006
rosa_rugosa Rorug01G0306600
rosa_samantha Rh1AG315700 Rh1CG295400 Rh1DG310100
rosa_wichuraiana Rw1G027960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 785
AatII GACGTC 1 cut(s) 786
Acc65I GGTACC 1 cut(s) 971
AccB1I GGYRCC 1 cut(s) 971
AccBSI CCGCTC 1 cut(s) 311
AccI GTMKAC 1 cut(s) 903
AccII CGCG 2 cut(s) 582, 597
AccIII TCCGGA 1 cut(s) 251
AciI CCGC 7 cut(s) 59, 76, 99, 309, 454, 489, 597
AclWI GGATC 2 cut(s) 729, 788
AcoI YGGCCR 1 cut(s) 530
AcsI RAATTY 2 cut(s) 65, 515
AcyI GRCGYC 2 cut(s) 612, 783
AfaI GTAC 3 cut(s) 443, 708, 973
AfiI CCNNNNNNNGG 4 cut(s) 58, 144, 170, 596
AgeI ACCGGT 1 cut(s) 119
AgsI TTSAA 4 cut(s) 622, 728, 740, 749
AjnI CCWGG 2 cut(s) 575, 859
AjuI GAANNNNNNNTTGG 2 cut(s) 890, 922
AluBI AGCT 6 cut(s) 213, 557, 703, 814, 877, 980
AluI AGCT 6 cut(s) 213, 557, 703, 814, 877, 980
Alw21I GWGCWC 3 cut(s) 503, 705, 771
Alw26I GTCTC 5 cut(s) 22, 128, 619, 771, 831
Alw44I GTGCAC 1 cut(s) 767
AlwI GGATC 2 cut(s) 729, 788
Aor13HI TCCGGA 1 cut(s) 251
AoxI GGCC 6 cut(s) 24, 172, 283, 399, 530, 693
ApaLI GTGCAC 1 cut(s) 767
ApeKI GCWGC 2 cut(s) 557, 686
ApoI RAATTY 2 cut(s) 65, 515
ArsI GACNNNNNNTTYG 2 cut(s) 896, 928
AsiGI ACCGGT 1 cut(s) 119
Asp718I GGTACC 1 cut(s) 971
AspLEI GCGC 3 cut(s) 269, 431, 582
AsuC2I CCSGG 1 cut(s) 398
AsuHPI GGTGA 4 cut(s) 79, 100, 190, 929
BaeGI GKGCMC 1 cut(s) 771
BanI GGYRCC 1 cut(s) 971
BanII GRGCYC 1 cut(s) 705
BauI CACGAG 1 cut(s) 681
Bbv12I GWGCWC 3 cut(s) 503, 705, 771
BbvCI CCTCAGC 1 cut(s) 485
BbvI GCAGC 2 cut(s) 544, 698
BccI CCATC 4 cut(s) 18, 278, 512, 611
BceAI ACGGC 4 cut(s) 208, 304, 517, 708
BciT130I CCWGG 2 cut(s) 577, 861
BciVI GTATCC 1 cut(s) 248
BcnI CCSGG 1 cut(s) 398
BcoDI GTCTC 5 cut(s) 22, 128, 619, 771, 831
BfaI CTAG 1 cut(s) 554
BfuI GTATCC 1 cut(s) 248
BisI GCNGC 4 cut(s) 60, 558, 598, 687
BlsI GCNGC 4 cut(s) 61, 559, 599, 688
Bme1390I CCNGG 3 cut(s) 398, 577, 861
BmiI GGNNCC 5 cut(s) 49, 218, 601, 627, 973
BmrFI CCNGG 3 cut(s) 398, 577, 861
BmsI GCATC 2 cut(s) 815, 880
Bpu10I CCTNAGC 1 cut(s) 485
BpuEI CTTGAG 1 cut(s) 19
BpuMI CCSGG 1 cut(s) 398
BsaHI GRCGYC 2 cut(s) 612, 783
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 8 cut(s) 190, 280, 286, 421, 527, 629, 690, 860
BsaWI WCCGGW 3 cut(s) 119, 251, 819
BsaXI ACNNNNNCTCC 4 cut(s) 371, 401, 814, 844
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 144, 170, 596
Bse118I RCCGGY 3 cut(s) 119, 200, 608
Bse1I ACTGG 1 cut(s) 14
Bse3DI GCAATG 2 cut(s) 177, 501
BseAI TCCGGA 1 cut(s) 251
BseBI CCWGG 2 cut(s) 577, 861
BseDI CCNNGG 8 cut(s) 190, 280, 286, 421, 527, 629, 690, 860
BseGI GGATG 4 cut(s) 10, 315, 567, 870
BseLI CCNNNNNNNGG 4 cut(s) 58, 144, 170, 596
BseMI GCAATG 2 cut(s) 177, 501
BseMII CTCAG 3 cut(s) 33, 309, 499
BseNI ACTGG 1 cut(s) 14
BseRI GAGGAG 2 cut(s) 85, 908
BseSI GKGCMC 1 cut(s) 771
BseXI GCAGC 2 cut(s) 544, 698
Bsh1236I CGCG 2 cut(s) 582, 597
BshFI GGCC 6 cut(s) 26, 174, 285, 401, 532, 695
BshNI GGYRCC 1 cut(s) 971
BshTI ACCGGT 1 cut(s) 119
BsiHKAI GWGCWC 3 cut(s) 503, 705, 771
BsiSI CCGG 6 cut(s) 120, 201, 252, 398, 609, 820
BsiWI CGTACG 1 cut(s) 706
BslFI GGGAC 3 cut(s) 18, 572, 737
BslI CCNNNNNNNGG 4 cut(s) 58, 144, 170, 596
BsmAI GTCTC 5 cut(s) 22, 128, 619, 771, 831
BsmBI CGTCTC 2 cut(s) 619, 771
BsmFI GGGAC 3 cut(s) 18, 572, 737
BsnI GGCC 6 cut(s) 26, 174, 285, 401, 532, 695
Bso31I GGTCTC 1 cut(s) 128
Bsp1286I GDGCHC 3 cut(s) 503, 705, 771
Bsp13I TCCGGA 1 cut(s) 251
Bsp1407I TGTACA 1 cut(s) 441
Bsp143I GATC 3 cut(s) 721, 793, 944
Bsp19I CCATGG 2 cut(s) 527, 629
BspACI CCGC 7 cut(s) 59, 76, 99, 309, 454, 489, 597
BspANI GGCC 6 cut(s) 26, 174, 285, 401, 532, 695
BspCNI CTCAG 3 cut(s) 32, 308, 498
BspEI TCCGGA 1 cut(s) 251
BspFNI CGCG 2 cut(s) 582, 597
BspLI GGNNCC 5 cut(s) 49, 218, 601, 627, 973
BspPI GGATC 2 cut(s) 729, 788
BspQI GCTCTTC 1 cut(s) 804
BspT107I GGYRCC 1 cut(s) 971
BspTNI GGTCTC 1 cut(s) 128
BsrBI CCGCTC 1 cut(s) 311
BsrDI GCAATG 2 cut(s) 177, 501
BsrFI RCCGGY 3 cut(s) 119, 200, 608
BsrGI TGTACA 1 cut(s) 441
BsrI ACTGG 1 cut(s) 14
BssAI RCCGGY 3 cut(s) 119, 200, 608
BssECI CCNNGG 8 cut(s) 190, 280, 286, 421, 527, 629, 690, 860
BssMI GATC 3 cut(s) 721, 793, 944
BssNI GRCGYC 2 cut(s) 612, 783
BssSI CACGAG 1 cut(s) 681
BssT1I CCWWGG 4 cut(s) 280, 421, 527, 629
Bst2BI CACGAG 1 cut(s) 681
Bst2UI CCWGG 2 cut(s) 577, 861
Bst4CI ACNGT 5 cut(s) 161, 302, 476, 670, 773
Bst6I CTCTTC 2 cut(s) 245, 804
BstACI GRCGYC 2 cut(s) 612, 783
BstAUI TGTACA 1 cut(s) 441
BstC8I GCNNGC 1 cut(s) 610
BstDEI CTNAG 3 cut(s) 19, 295, 485
BstDSI CCRYGG 5 cut(s) 190, 286, 527, 629, 690
BstF5I GGATG 4 cut(s) 10, 315, 567, 870
BstFNI CGCG 2 cut(s) 582, 597
BstHHI GCGC 3 cut(s) 269, 431, 582
BstKTI GATC 3 cut(s) 724, 796, 947
BstMAI GTCTC 5 cut(s) 22, 128, 619, 771, 831
BstMBI GATC 3 cut(s) 721, 793, 944
BstMWI GCNNNNNNNGC 3 cut(s) 201, 210, 692
BstNI CCWGG 2 cut(s) 577, 861
BstSCI CCNGG 3 cut(s) 396, 575, 859
BstSLI GKGCMC 1 cut(s) 771
BstUI CGCG 2 cut(s) 582, 597
BstV1I GCAGC 2 cut(s) 544, 698
BstX2I RGATCY 1 cut(s) 721
BstXI CCANNNNNNTGG 1 cut(s) 867
BstYI RGATCY 1 cut(s) 721
BsuI GTATCC 1 cut(s) 248
BsuRI GGCC 6 cut(s) 26, 174, 285, 401, 532, 695
BtgI CCRYGG 5 cut(s) 190, 286, 527, 629, 690
BtgZI GCGATG 1 cut(s) 589
BtsCI GGATG 4 cut(s) 10, 315, 567, 870
Cac8I GCNNGC 1 cut(s) 610
CfoI GCGC 3 cut(s) 269, 431, 582
Cfr10I RCCGGY 3 cut(s) 119, 200, 608
CseI GACGC 2 cut(s) 571, 601
Csp6I GTAC 3 cut(s) 442, 707, 972
CspAI ACCGGT 1 cut(s) 119
CviAII CATG 3 cut(s) 528, 630, 965
CviQI GTAC 3 cut(s) 442, 707, 972
DdeI CTNAG 3 cut(s) 19, 295, 485
DpnI GATC 3 cut(s) 723, 795, 946
DpnII GATC 3 cut(s) 721, 793, 944
DraI TTTAAA 1 cut(s) 520
DrdI GACNNNNNNGTC 1 cut(s) 785
DseDI GACNNNNNNGTC 1 cut(s) 785
EaeI YGGCCR 1 cut(s) 530
Eam1104I CTCTTC 2 cut(s) 245, 804
EarI CTCTTC 2 cut(s) 245, 804
EciI GGCGGA 1 cut(s) 443
Ecl136II GAGCTC 1 cut(s) 703
Eco130I CCWWGG 4 cut(s) 280, 421, 527, 629
Eco24I GRGCYC 1 cut(s) 705
Eco31I GGTCTC 1 cut(s) 128
Eco53kI GAGCTC 1 cut(s) 703
EcoICRI GAGCTC 1 cut(s) 703
EcoRI GAATTC 1 cut(s) 65
EcoRII CCWGG 2 cut(s) 575, 859
EcoT14I CCWWGG 4 cut(s) 280, 421, 527, 629
EcoT38I GRGCYC 1 cut(s) 705
ErhI CCWWGG 4 cut(s) 280, 421, 527, 629
Esp3I CGTCTC 2 cut(s) 619, 771
FaeI CATG 3 cut(s) 531, 633, 968
FaiI YATR 5 cut(s) 529, 631, 651, 699, 966
FaqI GGGAC 3 cut(s) 18, 572, 737
FatI CATG 3 cut(s) 527, 629, 964
FauI CCCGC 1 cut(s) 83
FblI GTMKAC 1 cut(s) 903
Fnu4HI GCNGC 4 cut(s) 60, 558, 598, 687
FokI GGATG 3 cut(s) 302, 554, 877
FriOI GRGCYC 1 cut(s) 705
Fsp4HI GCNGC 4 cut(s) 60, 558, 598, 687
FspBI CTAG 1 cut(s) 554
GlaI GCGC 3 cut(s) 268, 430, 581
GluI GCNGC 4 cut(s) 60, 558, 598, 687
HaeIII GGCC 6 cut(s) 26, 174, 285, 401, 532, 695
HapII CCGG 6 cut(s) 120, 201, 252, 398, 609, 820
HgaI GACGC 2 cut(s) 571, 601
HhaI GCGC 3 cut(s) 269, 431, 582
Hin1I GRCGYC 2 cut(s) 612, 783
Hin1II CATG 3 cut(s) 531, 633, 968
Hin6I GCGC 3 cut(s) 267, 429, 580
HinP1I GCGC 3 cut(s) 267, 429, 580
HincII GTYRAC 2 cut(s) 340, 904
HindII GTYRAC 2 cut(s) 340, 904
HindIII AAGCTT 1 cut(s) 978
HinfI GANTC 6 cut(s) 6, 148, 206, 416, 711, 887
HpaII CCGG 6 cut(s) 120, 201, 252, 398, 609, 820
HphI GGTGA 4 cut(s) 79, 100, 190, 929
Hpy166II GTNNAC 8 cut(s) 147, 164, 190, 340, 374, 677, 769, 904
Hpy188I TCNGA 5 cut(s) 22, 298, 415, 892, 949
Hpy188III TCNNGA 1 cut(s) 252
Hpy8I GTNNAC 8 cut(s) 147, 164, 190, 340, 374, 677, 769, 904
Hpy99I CGWCG 6 cut(s) 587, 674, 785, 788, 809, 905
HpyAV CCTTC 2 cut(s) 364, 412
HpyCH4III ACNGT 5 cut(s) 161, 302, 476, 670, 773
HpyCH4IV ACGT 4 cut(s) 105, 376, 783, 900
HpyCH4V TGCA 4 cut(s) 348, 494, 769, 828
HpyF10VI GCNNNNNNNGC 3 cut(s) 201, 210, 692
HpyF3I CTNAG 3 cut(s) 19, 295, 485
HpySE526I ACGT 4 cut(s) 105, 376, 783, 900
Hsp92I GRCGYC 2 cut(s) 612, 783
Hsp92II CATG 3 cut(s) 531, 633, 968
HspAI GCGC 3 cut(s) 267, 429, 580
Kpn2I TCCGGA 1 cut(s) 251
KpnI GGTACC 1 cut(s) 975
KroI GCCGGC 1 cut(s) 608
KroNI GCCGGC 1 cut(s) 610
Kzo9I GATC 3 cut(s) 721, 793, 944
LguI GCTCTTC 1 cut(s) 804
LmnI GCTCC 3 cut(s) 506, 605, 625
Lsp1109I GCAGC 2 cut(s) 544, 698
LweI GCATC 2 cut(s) 815, 880
MaeI CTAG 1 cut(s) 554
MaeII ACGT 4 cut(s) 105, 376, 783, 900
MaeIII GTNAC 5 cut(s) 85, 106, 377, 509, 534
MalI GATC 3 cut(s) 723, 795, 946
MbiI CCGCTC 1 cut(s) 311
MboI GATC 3 cut(s) 721, 793, 944
MboII GAAGA 4 cut(s) 232, 716, 752, 821
MflI RGATCY 1 cut(s) 721
MhlI GDGCHC 3 cut(s) 503, 705, 771
MluCI AATT 2 cut(s) 65, 515
MlyI GAGTC 3 cut(s) 142, 720, 896
MmeI TCCRAC 1 cut(s) 247
MreI CGCCGGCG 1 cut(s) 608
MroI TCCGGA 1 cut(s) 251
MroNI GCCGGC 1 cut(s) 608
MseI TTAA 4 cut(s) 519, 548, 936, 982
MspA1I CMGCKG 3 cut(s) 213, 489, 877
MspI CCGG 6 cut(s) 120, 201, 252, 398, 609, 820
MspR9I CCNGG 3 cut(s) 398, 577, 861
MvaI CCWGG 2 cut(s) 577, 861
MvnI CGCG 2 cut(s) 582, 597
MwoI GCNNNNNNNGC 3 cut(s) 201, 210, 692
NaeI GCCGGC 1 cut(s) 610
NciI CCSGG 1 cut(s) 398
NcoI CCATGG 2 cut(s) 527, 629
NdeII GATC 3 cut(s) 721, 793, 944
NgoMIV GCCGGC 1 cut(s) 608
NlaIII CATG 3 cut(s) 531, 633, 968
NlaIV GGNNCC 5 cut(s) 49, 218, 601, 627, 973
NmeAIII GCCGAG 1 cut(s) 150
NmuCI GTSAC 4 cut(s) 85, 106, 377, 509
PciSI GCTCTTC 1 cut(s) 804
PcsI WCGNNNNNNNCGW 2 cut(s) 777, 789
PdiI GCCGGC 1 cut(s) 610
PfeI GAWTC 2 cut(s) 206, 416
Pfl23II CGTACG 1 cut(s) 706
PflFI GACNNNGTC 2 cut(s) 782, 785
PinAI ACCGGT 1 cut(s) 119
PkrI GCNGC 4 cut(s) 61, 559, 599, 688
PleI GAGTC 3 cut(s) 142, 719, 895
PpsI GAGTC 3 cut(s) 142, 719, 895
Psp124BI GAGCTC 1 cut(s) 705
Psp6I CCWGG 2 cut(s) 575, 859
PspGI CCWGG 2 cut(s) 575, 859
PspLI CGTACG 1 cut(s) 706
PspN4I GGNNCC 5 cut(s) 49, 218, 601, 627, 973
PsuI RGATCY 1 cut(s) 721
PsyI GACNNNGTC 2 cut(s) 782, 785
PvuII CAGCTG 2 cut(s) 213, 877
RsaI GTAC 3 cut(s) 443, 708, 973
RsaNI GTAC 3 cut(s) 442, 707, 972
SacI GAGCTC 1 cut(s) 705
SalI GTCGAC 1 cut(s) 902
SapI GCTCTTC 1 cut(s) 804
SaqAI TTAA 4 cut(s) 519, 548, 936, 982
SatI GCNGC 4 cut(s) 60, 558, 598, 687
Sau3AI GATC 3 cut(s) 721, 793, 944
SchI GAGTC 3 cut(s) 142, 720, 896
ScrFI CCNGG 3 cut(s) 398, 577, 861
SduI GDGCHC 3 cut(s) 503, 705, 771
SfaNI GCATC 2 cut(s) 815, 880
SgrAI CRCCGGYG 2 cut(s) 200, 608
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
Sse9I AATT 2 cut(s) 65, 515
SsiI CCGC 7 cut(s) 59, 76, 99, 309, 454, 489, 597
SspMI CTAG 1 cut(s) 554
SstI GAGCTC 1 cut(s) 705
StyD4I CCNGG 3 cut(s) 396, 575, 859
StyI CCWWGG 4 cut(s) 280, 421, 527, 629
TaaI ACNGT 5 cut(s) 161, 302, 476, 670, 773
TaiI ACGT 4 cut(s) 108, 379, 786, 903
TaqI TCGA 3 cut(s) 273, 807, 903
TasI AATT 2 cut(s) 65, 515
TatI WGTACW 1 cut(s) 441
TauI GCSGC 2 cut(s) 62, 600
TfiI GAWTC 2 cut(s) 206, 416
Tru1I TTAA 4 cut(s) 519, 548, 936, 982
Tru9I TTAA 4 cut(s) 519, 548, 936, 982
TseFI GTSAC 4 cut(s) 85, 106, 377, 509
TseI GCWGC 2 cut(s) 557, 686
Tsp45I GTSAC 4 cut(s) 85, 106, 377, 509
TspDTI ATGAA 1 cut(s) 953
TspGWI ACGGA 4 cut(s) 73, 359, 652, 793
Tth111I GACNNNGTC 2 cut(s) 782, 785
VneI GTGCAC 1 cut(s) 767
XapI RAATTY 2 cut(s) 65, 515
XmiI GTMKAC 1 cut(s) 903
XspI CTAG 1 cut(s) 554
ZraI GACGTC 1 cut(s) 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.